RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 ANKRD63C9JTQ0 380 aa3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 NME4O00746 187 aa3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 NUPL2O15504 423 aaKnown RBP3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 TRAPPC3O43617 180 aa3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 AQP8O94778 261 aa3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 SNAP29O95721 258 aa3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 GP1BAP07359 652 aa3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 SERPINA6P08185 405 aa3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 CEACAM3P40198 252 aa3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 ACTR1BP42025 376 aa3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 OR3A4PP47883 348 aa3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 HCCSP53701 268 aa3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 SELENOTP62341 195 aa3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 STX4Q12846 297 aa3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 PSG5Q15238 335 aa3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 ATP6AP1Q15904 470 aa3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 ZBTB6Q15916 424 aa3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 KYAT1Q16773 422 aa3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 SLC36A2Q495M3 483 aa3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 TMEM31Q5JXX7 168 aa3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 TMEM179Q6ZVK1 233 aa3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 MRPL55Q7Z7F7 128 aaKnown RBP3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 STX12Q86Y82 276 aa3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 SKA3Q8IX90 412 aa3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 CA13Q8N1Q1 262 aa3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 OR10G3Q8NGC4 313 aa3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 MCOLN3Q8TDD5 553 aa3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 SDR42E1Q8WUS8 393 aa3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 ESR2Q92731 530 aa3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 FGF14Q92915 247 aa3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 TMEM54Q969K7 222 aa3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 TMEM230Q96A57 120 aa3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 FGGYQ96C11 551 aa3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 CMTM5Q96DZ9 223 aa3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 RSG1Q9BU20 258 aa3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 DERL2Q9GZP9 239 aa3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 DSN1Q9H410 356 aa3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 KCNJ16Q9NPI9 418 aa3.82□□□□□ -1.8
CCDC88A-206ENST00000430086 ARHGAP23Q9P227 1491 aa3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 FHOD3Q2V2M9 1422 aa3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 MAPK8IP3Q9UPT6 1336 aa3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 IGKV1D-8A0A087WSZ0 117 aa3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 RBMY1BA6NDE4 496 aaKnown RBP3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 RBMY1EA6NEQ0 496 aaKnown RBP3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 OR6C70A6NIJ9 312 aa3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 A6NIZ1 184 aa3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 ERI3O43414 337 aaKnown RBP3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 DPM1O60762 260 aa3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 LYPLA1O75608 230 aaPredicted RBP3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 OR5F1O95221 314 aa3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 ACTL6AO96019 429 aa3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 IGLV1-47P01700 117 aa3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 APOEP02649 317 aa3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 SEMG1P04279 462 aa3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 RBMY1DP0C7P1 496 aaKnown RBP3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 RBMY1A1P0DJD3 496 aaKnown RBP3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 PSKH1P11801 424 aa3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 HLA-GP17693 338 aa3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 IGFBP3P17936 291 aaPredicted RBP3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 MAGP20916 626 aa3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 CXCR2P25025 360 aa3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 SERPINB5P36952 375 aa3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 GPX4P36969 197 aaPredicted RBP3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 MAGEA3P43357 314 aa3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 RAP1BP61224 184 aa3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 MRPS25P82663 173 aaKnown RBP3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 MADCAM1Q13477 382 aa3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 ZNHIT3Q15649 155 aaPredicted RBP3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 TMEM249Q2WGJ8 235 aa3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 CXCL17Q6UXB2 119 aa3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 C12orf54Q6X4T0 127 aa3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 CBR4Q8N4T8 237 aa3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 LFNGQ8NES3 379 aa3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 OR6Q1Q8NGQ2 317 aa3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 OR10Z1Q8NGY1 313 aa3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 OR51E1Q8TCB6 317 aa3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 DNAJB3Q8WWF6 145 aa3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 ARPC1AQ92747 370 aa3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 DYNLL2Q96FJ2 89 aa3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 P2RX4Q99571 388 aa3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 RIOK2Q9BVS4 552 aaKnown RBP3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 REEP1Q9H902 201 aa3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 ASCL3Q9NQ33 180 aa3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 SLC39A1Q9NY26 324 aa3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 CES1P1Q9UKY3 287 aa3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 ACOT9Q9Y305 439 aa3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 POLR3HQ9Y535 204 aaPredicted RBP3.81□□□□□ -1.8
CCDC88A-206ENST00000430086 MAP3K5Q99683 1374 aa3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 ELP1O95163 1332 aa3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 ABCB11O95342 1321 aa3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 MAP3K15Q6ZN16 1313 aa3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 IGHV3OR16-13A0A075B7E8 117 aa3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 A0A1W2PRG6 482 aa3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 HIDE1A8MVS5 230 aa3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 AGPAT2O15120 278 aa3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 SLC16A4O15374 487 aa3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 CRXO43186 299 aaPredicted RBP3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 SLC16A7O60669 478 aa3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 TBL1XO60907 577 aa3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 RBBP9O75884 186 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms