RNA–Protein interactions for RNA: ENST00000423635.5

CHCHD3-202, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 1 (best)

Gene CHCHD3, Length 1,310 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-202ENST00000423635 ST8SIA4Q92187 359 aa13.7□□□□□ -0.22
CHCHD3-202ENST00000423635 PARD6BQ9BYG5 372 aa13.7□□□□□ -0.22
CHCHD3-202ENST00000423635 NUAK2Q9H093 628 aa13.7□□□□□ -0.22
CHCHD3-202ENST00000423635 RERGLQ9H628 205 aa13.7□□□□□ -0.22
CHCHD3-202ENST00000423635 RPS6KA6Q9UK32 745 aa13.7□□□□□ -0.22
CHCHD3-202ENST00000423635 TENM3Q9P273 2699 aa13.7□□□□□ -0.22
CHCHD3-202ENST00000423635 IMPA2O14732 288 aa13.69□□□□□ -0.22
CHCHD3-202ENST00000423635 SDHAP31040 664 aa13.69□□□□□ -0.22
CHCHD3-202ENST00000423635 EMX1Q04741 257 aaPredicted RBP13.69□□□□□ -0.22
CHCHD3-202ENST00000423635 KRR1Q13601 381 aaKnown RBP13.69□□□□□ -0.22
CHCHD3-202ENST00000423635 TRAM2Q15035 370 aa13.69□□□□□ -0.22
CHCHD3-202ENST00000423635 CYBRD1Q53TN4 286 aa13.69□□□□□ -0.22
CHCHD3-202ENST00000423635 GPR139Q6DWJ6 353 aa13.69□□□□□ -0.22
CHCHD3-202ENST00000423635 CMTM4Q8IZR5 234 aa13.69□□□□□ -0.22
CHCHD3-202ENST00000423635 OFCC1Q8IZS5 231 aa13.69□□□□□ -0.22
CHCHD3-202ENST00000423635 Q8N7P7 452 aa13.69□□□□□ -0.22
CHCHD3-202ENST00000423635 ACOT11Q8WXI4 607 aaPredicted RBP13.69□□□□□ -0.22
CHCHD3-202ENST00000423635 TNFRSF14Q92956 283 aa13.69□□□□□ -0.22
CHCHD3-202ENST00000423635 SH3GL1Q99961 368 aa13.69□□□□□ -0.22
CHCHD3-202ENST00000423635 NRIP3Q9NQ35 241 aa13.69□□□□□ -0.22
CHCHD3-202ENST00000423635 SIRT7Q9NRC8 400 aa13.69□□□□□ -0.22
CHCHD3-202ENST00000423635 C1orf123Q9NWV4 160 aa13.69□□□□□ -0.22
CHCHD3-202ENST00000423635 POLR1DQ9Y2S0 133 aa13.69□□□□□ -0.22
CHCHD3-202ENST00000423635 DNAH9Q9NYC9 4486 aa13.69□□□□□ -0.22
CHCHD3-202ENST00000423635 A0A087WUU8 490 aa13.68□□□□□ -0.22
CHCHD3-202ENST00000423635 CD300LBA8K4G0 201 aa13.68□□□□□ -0.22
CHCHD3-202ENST00000423635 F5H5K5 113 aa13.68□□□□□ -0.22
CHCHD3-202ENST00000423635 PTP4A3O75365 173 aa13.68□□□□□ -0.22
CHCHD3-202ENST00000423635 PPP1R3DO95685 299 aa13.68□□□□□ -0.22
CHCHD3-202ENST00000423635 SELENOWP63302 87 aa13.68□□□□□ -0.22
CHCHD3-202ENST00000423635 POU4F2Q12837 409 aa13.68□□□□□ -0.22
CHCHD3-202ENST00000423635 ECH1Q13011 328 aa13.68□□□□□ -0.22
CHCHD3-202ENST00000423635 ERICH5Q6P6B1 374 aa13.68□□□□□ -0.22
CHCHD3-202ENST00000423635 CORO6Q6QEF8 472 aa13.68□□□□□ -0.22
CHCHD3-202ENST00000423635 ZNF826PQ6ZT77 177 aa13.68□□□□□ -0.22
CHCHD3-202ENST00000423635 MBOAT2Q6ZWT7 520 aa13.68□□□□□ -0.22
CHCHD3-202ENST00000423635 FGFRL1Q8N441 504 aa13.68□□□□□ -0.22
CHCHD3-202ENST00000423635 KLHDC1Q8N7A1 406 aa13.68□□□□□ -0.22
CHCHD3-202ENST00000423635 BEND2Q8NDZ0 799 aa13.68□□□□□ -0.22
CHCHD3-202ENST00000423635 OR4S1Q8NGB4 309 aa13.68□□□□□ -0.22
CHCHD3-202ENST00000423635 STON2Q8WXE9 905 aa13.68□□□□□ -0.22
CHCHD3-202ENST00000423635 PHF21AQ96BD5 680 aa13.68□□□□□ -0.22
CHCHD3-202ENST00000423635 TLCD1Q96CP7 247 aa13.68□□□□□ -0.22
CHCHD3-202ENST00000423635 ITPKCQ96DU7 683 aa13.68□□□□□ -0.22
CHCHD3-202ENST00000423635 FNDC11Q9BVV2 318 aa13.68□□□□□ -0.22
CHCHD3-202ENST00000423635 TOR3AQ9H497 397 aa13.68□□□□□ -0.22
CHCHD3-202ENST00000423635 RANBP3Q9H6Z4 567 aaPredicted RBP13.68□□□□□ -0.22
CHCHD3-202ENST00000423635 ONECUT1Q9UBC0 465 aa13.68□□□□□ -0.22
CHCHD3-202ENST00000423635 RHCGQ9UBD6 479 aa13.68□□□□□ -0.22
CHCHD3-202ENST00000423635 AURKCQ9UQB9 309 aa13.68□□□□□ -0.22
CHCHD3-202ENST00000423635 MAB21L2Q9Y586 359 aa13.68□□□□□ -0.22
CHCHD3-202ENST00000423635 FFAR1O14842 300 aa13.67□□□□□ -0.22
CHCHD3-202ENST00000423635 PAHP00439 452 aa13.67□□□□□ -0.22
CHCHD3-202ENST00000423635 LCATP04180 440 aa13.67□□□□□ -0.22
CHCHD3-202ENST00000423635 KDELR2P33947 212 aa13.67□□□□□ -0.22
CHCHD3-202ENST00000423635 MDH1P40925 334 aaKnown RBP13.67□□□□□ -0.22
CHCHD3-202ENST00000423635 UBE2E1P51965 193 aa13.67□□□□□ -0.22
CHCHD3-202ENST00000423635 ACSM1Q08AH1 577 aa13.67□□□□□ -0.22
CHCHD3-202ENST00000423635 CYLC2Q14093 348 aaPredicted RBP13.67□□□□□ -0.22
CHCHD3-202ENST00000423635 MEP1BQ16820 701 aa13.67□□□□□ -0.22
CHCHD3-202ENST00000423635 RABL3Q5HYI8 236 aa13.67□□□□□ -0.22
CHCHD3-202ENST00000423635 CRIP3Q6Q6R5 217 aa13.67□□□□□ -0.22
CHCHD3-202ENST00000423635 TBPL2Q6SJ96 375 aa13.67□□□□□ -0.22
CHCHD3-202ENST00000423635 PTCHD4Q6ZW05 846 aa13.67□□□□□ -0.22
CHCHD3-202ENST00000423635 ADCK1Q86TW2 530 aa13.67□□□□□ -0.22
CHCHD3-202ENST00000423635 OR8J3Q8NGG0 315 aa13.67□□□□□ -0.22
CHCHD3-202ENST00000423635 OR2T6Q8NHC8 308 aa13.67□□□□□ -0.22
CHCHD3-202ENST00000423635 GPX7Q96SL4 187 aaPredicted RBP13.67□□□□□ -0.22
CHCHD3-202ENST00000423635 ADAT1Q9BUB4 502 aaKnown RBP13.67□□□□□ -0.22
CHCHD3-202ENST00000423635 NDEL1Q9GZM8 345 aa13.67□□□□□ -0.22
CHCHD3-202ENST00000423635 MRPL15Q9P015 296 aaKnown RBP13.67□□□□□ -0.22
CHCHD3-202ENST00000423635 MEIOCA2RUB1 952 aa13.66□□□□□ -0.22
CHCHD3-202ENST00000423635 H3BUX3 64 aa13.66□□□□□ -0.22
CHCHD3-202ENST00000423635 TXNDC12O95881 172 aa13.66□□□□□ -0.22
CHCHD3-202ENST00000423635 MUC1P15941 1255 aaPredicted RBP13.66□□□□□ -0.22
CHCHD3-202ENST00000423635 CRABP1P29762 137 aa13.66□□□□□ -0.22
CHCHD3-202ENST00000423635 SAA4P35542 130 aa13.66□□□□□ -0.22
CHCHD3-202ENST00000423635 CDKN2AP42771 156 aaKnown RBP13.66□□□□□ -0.22
CHCHD3-202ENST00000423635 YAP1P46937 504 aaKnown RBP13.66□□□□□ -0.22
CHCHD3-202ENST00000423635 FOXB2Q5VYV0 432 aa13.66□□□□□ -0.22
CHCHD3-202ENST00000423635 SLC18B1Q6NT16 456 aa13.66□□□□□ -0.22
CHCHD3-202ENST00000423635 ZNF730Q6ZMV8 503 aa13.66□□□□□ -0.22
CHCHD3-202ENST00000423635 CFAP77Q6ZQR2 320 aa13.66□□□□□ -0.22
CHCHD3-202ENST00000423635 MRPL21Q7Z2W9 205 aaKnown RBP13.66□□□□□ -0.22
CHCHD3-202ENST00000423635 TSEN54Q7Z6J9 526 aaKnown RBP13.66□□□□□ -0.22
CHCHD3-202ENST00000423635 DTX3Q8N9I9 347 aa13.66□□□□□ -0.22
CHCHD3-202ENST00000423635 OR4C13Q8NGP0 309 aa13.66□□□□□ -0.22
CHCHD3-202ENST00000423635 C8orf46Q8TAG6 207 aa13.66□□□□□ -0.22
CHCHD3-202ENST00000423635 TPD52L3Q96J77 140 aa13.66□□□□□ -0.22
CHCHD3-202ENST00000423635 CCL13Q99616 98 aa13.66□□□□□ -0.22
CHCHD3-202ENST00000423635 ATF6BQ99941 703 aa13.66□□□□□ -0.22
CHCHD3-202ENST00000423635 DCTN5Q9BTE1 182 aa13.66□□□□□ -0.22
CHCHD3-202ENST00000423635 FAM234AQ9H0X4 552 aa13.66□□□□□ -0.22
CHCHD3-202ENST00000423635 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.66□□□□□ -0.22
CHCHD3-202ENST00000423635 RAB21Q9UL25 225 aa13.66□□□□□ -0.22
CHCHD3-202ENST00000423635 PRPF19Q9UMS4 504 aaKnown RBP13.66□□□□□ -0.22
CHCHD3-202ENST00000423635 SNX13Q9Y5W8 968 aa13.66□□□□□ -0.22
CHCHD3-202ENST00000423635 V9GYY5 206 aaPredicted RBP13.66□□□□□ -0.22
CHCHD3-202ENST00000423635 IGHV3OR15-7A0A075B7D8 119 aa13.65□□□□□ -0.22
CHCHD3-202ENST00000423635 A0A1B0GW55 424 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms