RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 RFLNBQ8N5W9 214 aa7.4□□□□□ -1.22
USP54-203ENST00000418501 FDCSPQ8NFU4 85 aa7.4□□□□□ -1.22
USP54-203ENST00000418501 ZNRF4Q8WWF5 429 aa7.4□□□□□ -1.22
USP54-203ENST00000418501 ALKBH3Q96Q83 286 aaPredicted RBP7.4□□□□□ -1.22
USP54-203ENST00000418501 TRIB1Q96RU8 372 aa7.4□□□□□ -1.22
USP54-203ENST00000418501 OR2H1Q9GZK4 316 aa7.4□□□□□ -1.22
USP54-203ENST00000418501 CCDC86Q9H6F5 360 aaKnown RBP7.4□□□□□ -1.22
USP54-203ENST00000418501 ZDHHC11Q9H8X9 412 aa7.4□□□□□ -1.22
USP54-203ENST00000418501 MRPS28Q9Y2Q9 187 aaKnown RBP7.4□□□□□ -1.22
USP54-203ENST00000418501 PRSS44E7EML9 344 aa7.4□□□□□ -1.23
USP54-203ENST00000418501 PRRG2O14669 202 aa7.4□□□□□ -1.23
USP54-203ENST00000418501 EFSO43281 561 aa7.4□□□□□ -1.23
USP54-203ENST00000418501 IGHG3P01860 377 aa7.4□□□□□ -1.23
USP54-203ENST00000418501 B4GALT1P15291 398 aa7.4□□□□□ -1.23
USP54-203ENST00000418501 RFC3P40938 356 aa7.4□□□□□ -1.23
USP54-203ENST00000418501 OR10A3P58181 314 aa7.4□□□□□ -1.23
USP54-203ENST00000418501 RPUSD3Q6P087 351 aaKnown RBP7.4□□□□□ -1.23
USP54-203ENST00000418501 OR51A2Q8NGJ7 313 aa7.4□□□□□ -1.23
USP54-203ENST00000418501 OR13C9Q8NGT0 318 aa7.4□□□□□ -1.23
USP54-203ENST00000418501 SMIM4Q8WVI0 70 aa7.4□□□□□ -1.23
USP54-203ENST00000418501 NUDT16L1Q9BRJ7 211 aaKnown RBP7.4□□□□□ -1.23
USP54-203ENST00000418501 MIXL1Q9H2W2 232 aa7.4□□□□□ -1.23
USP54-203ENST00000418501 G6PC2Q9NQR9 355 aa7.4□□□□□ -1.23
USP54-203ENST00000418501 MCUBQ9NWR8 336 aa7.4□□□□□ -1.23
USP54-203ENST00000418501 TRAV18A0A075B6X5 111 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 INMT-MINDY4F8WBC2 141 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 TPOP07202 933 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 SFTPCP11686 197 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 ZNF32P17041 273 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 TBPP20226 339 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 TAS2R19P59542 299 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 SELENOVP59797 346 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 FAPQ12884 760 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 ZMYND11Q15326 602 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 P2RY14Q15391 338 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 RSPO4Q2I0M5 234 aaPredicted RBP7.39□□□□□ -1.23
USP54-203ENST00000418501 SLC25A35Q3KQZ1 300 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 TUSC5Q8IXB3 177 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 OR6K3Q8NGY3 331 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 UBASH3BQ8TF42 649 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 ING4Q9UNL4 249 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 AKAIN1P0CW23 69 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 TMPRSS3P57727 454 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 MFGE8Q08431 387 aaPredicted RBP7.39□□□□□ -1.23
USP54-203ENST00000418501 FAM27D1Q5T7N8 215 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 PEG10Q86TG7 708 aaKnown RBP7.39□□□□□ -1.23
USP54-203ENST00000418501 IL17RDQ8NFM7 739 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 FNDC9Q8TBE3 224 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 ZNF775Q96BV0 537 aaPredicted RBP7.39□□□□□ -1.23
USP54-203ENST00000418501 REEP6Q96HR9 211 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 ZNF845Q96IR2 970 aaPredicted RBP7.39□□□□□ -1.23
USP54-203ENST00000418501 TIMP4Q99727 224 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 PIGLQ9Y2B2 252 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 ZNF816-ZNF321PA0A0X1KG74 233 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 A0A1W2PNU3 283 aaPredicted RBP7.39□□□□□ -1.23
USP54-203ENST00000418501 TTRP02766 147 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 EIF4EP06730 217 aaKnown RBP7.39□□□□□ -1.23
USP54-203ENST00000418501 CSF3P09919 207 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 CPT2P23786 658 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 CFPP27918 469 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 RPS11P62280 158 aaKnown RBP eCLIP7.39□□□□□ -1.23
USP54-203ENST00000418501 RSU1Q15404 277 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 C1orf100Q5SVJ3 147 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 BEND4Q6ZU67 534 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 CNEP1R1Q8N9A8 125 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 OR8B12Q8NGG6 310 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 ABHD3Q8WU67 409 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 ZNF221Q9UK13 617 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 AMDHD2Q9Y303 409 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 CACNA1GO43497 2377 aa7.39□□□□□ -1.23
USP54-203ENST00000418501 THBS2P35442 1172 aa7.38□□□□□ -1.23
USP54-203ENST00000418501 OR3A2P47893 321 aa7.38□□□□□ -1.23
USP54-203ENST00000418501 FUT6P51993 359 aa7.38□□□□□ -1.23
USP54-203ENST00000418501 HIST1H3AP68431 136 aa7.38□□□□□ -1.23
USP54-203ENST00000418501 ARFRP1Q13795 201 aa7.38□□□□□ -1.23
USP54-203ENST00000418501 GSG1Q2KHT4 349 aa7.38□□□□□ -1.23
USP54-203ENST00000418501 HIST2H3PS2Q5TEC6 136 aa7.38□□□□□ -1.23
USP54-203ENST00000418501 INO80CQ6PI98 192 aaPredicted RBP7.38□□□□□ -1.23
USP54-203ENST00000418501 ZNF782Q6ZMW2 699 aaPredicted RBP7.38□□□□□ -1.23
USP54-203ENST00000418501 HIST2H3AQ71DI3 136 aa7.38□□□□□ -1.23
USP54-203ENST00000418501 LRRTM1Q86UE6 522 aa7.38□□□□□ -1.23
USP54-203ENST00000418501 CMTM4Q8IZR5 234 aa7.38□□□□□ -1.23
USP54-203ENST00000418501 RDH10Q8IZV5 341 aa7.38□□□□□ -1.23
USP54-203ENST00000418501 OR51D1Q8NGF3 324 aa7.38□□□□□ -1.23
USP54-203ENST00000418501 ZNF524Q96C55 264 aa7.38□□□□□ -1.23
USP54-203ENST00000418501 ZC3HAV1LQ96H79 300 aaKnown RBP7.38□□□□□ -1.23
USP54-203ENST00000418501 NPAS1Q99742 590 aa7.38□□□□□ -1.23
USP54-203ENST00000418501 CACNG6Q9BXT2 260 aa7.38□□□□□ -1.23
USP54-203ENST00000418501 PRDM14Q9GZV8 571 aa7.38□□□□□ -1.23
USP54-203ENST00000418501 MED28Q9H204 178 aa7.38□□□□□ -1.23
USP54-203ENST00000418501 KCNMB2Q9Y691 235 aa7.38□□□□□ -1.23
USP54-203ENST00000418501 PIGBOS1A0A0B4J2F0 54 aa7.38□□□□□ -1.23
USP54-203ENST00000418501 MASP2O00187 686 aa7.38□□□□□ -1.23
USP54-203ENST00000418501 CEACAM4O75871 244 aa7.38□□□□□ -1.23
USP54-203ENST00000418501 CCNKO75909 580 aa7.38□□□□□ -1.23
USP54-203ENST00000418501 CCL1P22362 96 aa7.38□□□□□ -1.23
USP54-203ENST00000418501 CCNOP22674 350 aa7.38□□□□□ -1.23
USP54-203ENST00000418501 IL32P24001 234 aa7.38□□□□□ -1.23
USP54-203ENST00000418501 RAG2P55895 527 aa7.38□□□□□ -1.23
USP54-203ENST00000418501 PNLIPRP3Q17RR3 467 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms