RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 TOX3O15405 576 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-203ENST00000409050 DHHO43323 396 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 SELENOFO60613 162 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 ZIC2O95409 532 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-203ENST00000409050 CRYAAP02489 173 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 LIPCP11150 499 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 CD80P33681 288 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 IRS1P35568 1242 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 IL24Q13007 206 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 RAB6CQ53S08 254 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 COX20Q5RI15 118 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 SLC25A30Q5SVS4 291 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 MRM1Q6IN84 353 aaKnown RBP5.53□□□□□ -1.52
SCN1A-203ENST00000409050 LIN28BQ6ZN17 250 aaKnown RBP eCLIP5.53□□□□□ -1.522e-6■■□□□ 12
SCN1A-203ENST00000409050 TAS1R1Q7RTX1 841 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 ZNF511Q8NB15 262 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 SLC16A11Q8NCK7 471 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 OR2G2Q8NGZ5 317 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 TMEM204Q9BSN7 226 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 ANGPTL4Q9BY76 406 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 RAB6CQ9H0N0 254 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 ZDHHC11Q9H8X9 412 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 TMEM167BQ9NRX6 74 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 MTCH1Q9NZJ7 389 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 GDF2Q9UK05 429 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-203ENST00000409050 PROCRQ9UNN8 238 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 GOLT1BQ9Y3E0 138 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 AMMECR1Q9Y4X0 333 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-203ENST00000409050 CCDC163A0A0D9SF12 145 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 NUPL2O15504 423 aaKnown RBP5.53□□□□□ -1.52
SCN1A-203ENST00000409050 LRP3O75074 770 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 EMP3P54852 163 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 RNPS1Q15287 305 aaKnown RBP5.53□□□□□ -1.52
SCN1A-203ENST00000409050 LGALSLQ3ZCW2 172 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-203ENST00000409050 TMEM97Q5BJF2 176 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 FAM78AQ5JUQ0 283 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 TMEM268Q5VZI3 342 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 C17orf107Q6ZR85 190 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 DUSP18Q8NEJ0 188 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 GRAMD2BQ96HH9 432 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 VPS25Q9BRG1 176 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 VAMP8Q9BV40 100 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 MED20Q9H944 212 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 FAM74A7A6NL05 159 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 NPIPB8E9PQR5 432 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 ENSAO43768 121 aaKnown RBP5.53□□□□□ -1.52
SCN1A-203ENST00000409050 HSBP1O75506 76 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 SMIM6P0DI80 62 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 OR13C7P0DN81 318 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 PSMB5P28074 263 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 VWA2Q5GFL6 755 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 FA2HQ7L5A8 372 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 LINC00596Q86U02 117 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 CA13Q8N1Q1 262 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 DEFB119Q8N690 84 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 OR4S1Q8NGB4 309 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 OR6S1Q8NH40 331 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 VSTM2AQ8TAG5 236 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 GPR119Q8TDV5 335 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 GMPPAQ96IJ6 420 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-203ENST00000409050 AAMDCQ9H7C9 122 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 RHOFQ9HBH0 211 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 MTFP1Q9UDX5 166 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 PPIL1Q9Y3C6 166 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 SCN11AQ9UI33 1791 aa5.53□□□□□ -1.52
SCN1A-203ENST00000409050 POM121CA8CG34 1229 aa5.52□□□□□ -1.53
SCN1A-203ENST00000409050 ZNF195O14628 629 aa5.52□□□□□ -1.53
SCN1A-203ENST00000409050 PRRG2O14669 202 aa5.52□□□□□ -1.53
SCN1A-203ENST00000409050 CNIH1O95406 144 aa5.52□□□□□ -1.53
SCN1A-203ENST00000409050 SFT2D2O95562 160 aa5.52□□□□□ -1.53
SCN1A-203ENST00000409050 IFI6P09912 130 aa5.52□□□□□ -1.53
SCN1A-203ENST00000409050 CLEC2LP0C7M8 214 aa5.52□□□□□ -1.53
SCN1A-203ENST00000409050 BSGP35613 385 aa5.52□□□□□ -1.53
SCN1A-203ENST00000409050 CD200P41217 278 aa5.52□□□□□ -1.53
SCN1A-203ENST00000409050 DSCR4P56555 118 aaPredicted RBP5.52□□□□□ -1.53
SCN1A-203ENST00000409050 CLDN12P56749 244 aa5.52□□□□□ -1.53
SCN1A-203ENST00000409050 MRPL58Q14197 206 aaKnown RBP5.52□□□□□ -1.53
SCN1A-203ENST00000409050 TCTN3Q6NUS6 607 aa5.52□□□□□ -1.53
SCN1A-203ENST00000409050 ZNF343Q6P1L6 599 aa5.52□□□□□ -1.53
SCN1A-203ENST00000409050 LRRC18Q8N456 261 aa5.52□□□□□ -1.53
SCN1A-203ENST00000409050 PLPP7Q8NBV4 271 aa5.52□□□□□ -1.53
SCN1A-203ENST00000409050 NOXO1Q8NFA2 376 aa5.52□□□□□ -1.53
SCN1A-203ENST00000409050 STXBP6Q8NFX7 210 aa5.52□□□□□ -1.53
SCN1A-203ENST00000409050 OR5D13Q8NGL4 314 aa5.52□□□□□ -1.53
SCN1A-203ENST00000409050 RELTQ969Z4 430 aa5.52□□□□□ -1.53
SCN1A-203ENST00000409050 GALMQ96C23 342 aa5.52□□□□□ -1.53
SCN1A-203ENST00000409050 ZNF845Q96IR2 970 aaPredicted RBP5.52□□□□□ -1.53
SCN1A-203ENST00000409050 TPSD1Q9BZJ3 242 aa5.52□□□□□ -1.53
SCN1A-203ENST00000409050 DBX1A6NMT0 343 aa5.52□□□□□ -1.53
SCN1A-203ENST00000409050 ZBTB42B2RXF5 422 aa5.52□□□□□ -1.53
SCN1A-203ENST00000409050 QDPRP09417 244 aa5.52□□□□□ -1.53
SCN1A-203ENST00000409050 CAPZBP47756 277 aa5.52□□□□□ -1.53
SCN1A-203ENST00000409050 HNRNPA3P51991 378 aaKnown RBP5.52□□□□□ -1.53
SCN1A-203ENST00000409050 DGCR2P98153 550 aa5.52□□□□□ -1.53
SCN1A-203ENST00000409050 GPNMBQ14956 572 aa5.52□□□□□ -1.53
SCN1A-203ENST00000409050 ZNF542PQ5EBM4 170 aa5.52□□□□□ -1.53
SCN1A-203ENST00000409050 TRNP1Q6NT89 227 aa5.52□□□□□ -1.53
SCN1A-203ENST00000409050 PRSS54Q6PEW0 395 aa5.52□□□□□ -1.53
SCN1A-203ENST00000409050 NLGN4XQ8N0W4 816 aa5.52□□□□□ -1.53
SCN1A-203ENST00000409050 NLGN4YQ8NFZ3 816 aaPredicted RBP5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 103.4 ms