RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 AKR7LQ8NHP1 331 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 PIGTQ969N2 578 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 RADILQ96JH8 1075 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 COX4I2Q96KJ9 171 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 OR8B4Q96RC9 309 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 RHNO1Q9BSD3 238 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 CDADC1Q9BWV3 514 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 C1QTNF5Q9BXJ0 243 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 ESRP2Q9H6T0 727 aaKnown RBP7.91□□□□□ -1.14
VPS53-203ENST00000401468 NIPAL2Q9H841 368 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 RNF121Q9H920 327 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 AMBNQ9NP70 447 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 PLEK2Q9NYT0 353 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 LAMP5Q9UJQ1 280 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 MYRFQ9Y2G1 1151 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 POLR1DQ9Y2S0 133 aa7.91□□□□□ -1.14
VPS53-203ENST00000401468 SHISA9B4DS77 424 aa7.9□□□□□ -1.14
VPS53-203ENST00000401468 MRPS14O60783 128 aaKnown RBP7.9□□□□□ -1.14
VPS53-203ENST00000401468 FAM20BO75063 409 aa7.9□□□□□ -1.14
VPS53-203ENST00000401468 HEXAP06865 529 aa7.9□□□□□ -1.14
VPS53-203ENST00000401468 ACSM4P0C7M7 580 aa7.9□□□□□ -1.14
VPS53-203ENST00000401468 TUBG1P23258 451 aa7.9□□□□□ -1.14
VPS53-203ENST00000401468 APEX1P27695 318 aaKnown RBP7.9□□□□□ -1.14
VPS53-203ENST00000401468 WNT5AP41221 380 aa7.9□□□□□ -1.14
VPS53-203ENST00000401468 HTR5AP47898 357 aa7.9□□□□□ -1.14
VPS53-203ENST00000401468 GABARAPL2P60520 117 aa7.9□□□□□ -1.14
VPS53-203ENST00000401468 GRB2P62993 217 aaKnown RBP7.9□□□□□ -1.14
VPS53-203ENST00000401468 HGFACQ04756 655 aa7.9□□□□□ -1.14
VPS53-203ENST00000401468 TBC1D28Q2M2D7 210 aa7.9□□□□□ -1.14
VPS53-203ENST00000401468 KRT80Q6KB66 452 aa7.9□□□□□ -1.14
VPS53-203ENST00000401468 ZNF322Q6U7Q0 402 aaPredicted RBP7.9□□□□□ -1.14
VPS53-203ENST00000401468 KCTD20Q7Z5Y7 419 aa7.9□□□□□ -1.14
VPS53-203ENST00000401468 ZSCAN2Q7Z7L9 614 aaPredicted RBP7.9□□□□□ -1.14
VPS53-203ENST00000401468 C1orf174Q8IYL3 243 aa7.9□□□□□ -1.14
VPS53-203ENST00000401468 SYS1Q8N2H4 156 aa7.9□□□□□ -1.14
VPS53-203ENST00000401468 PAQR4Q8N4S7 273 aaPredicted RBP7.9□□□□□ -1.14
VPS53-203ENST00000401468 BPIFB6Q8NFQ5 453 aa7.9□□□□□ -1.14
VPS53-203ENST00000401468 OR1J2Q8NGS2 313 aa7.9□□□□□ -1.14
VPS53-203ENST00000401468 SPATA3Q8NHX4 192 aa7.9□□□□□ -1.14
VPS53-203ENST00000401468 RPS4Y2Q8TD47 263 aa7.9□□□□□ -1.14
VPS53-203ENST00000401468 SMAP2Q8WU79 429 aaPredicted RBP7.9□□□□□ -1.14
VPS53-203ENST00000401468 IGFBPL1Q8WX77 278 aa7.9□□□□□ -1.14
VPS53-203ENST00000401468 FBXW5Q969U6 566 aa7.9□□□□□ -1.14
VPS53-203ENST00000401468 TMEM80Q96HE8 168 aa7.9□□□□□ -1.14
VPS53-203ENST00000401468 KCNJ15Q99712 375 aa7.9□□□□□ -1.14
VPS53-203ENST00000401468 CDCA4Q9BXL8 241 aa7.9□□□□□ -1.14
VPS53-203ENST00000401468 TUBG2Q9NRH3 451 aa7.9□□□□□ -1.14
VPS53-203ENST00000401468 TBCCD1Q9NVR7 557 aa7.9□□□□□ -1.14
VPS53-203ENST00000401468 ERVK13-1Q9NX77 482 aa7.9□□□□□ -1.14
VPS53-203ENST00000401468 SLCO1C1Q9NYB5 712 aa7.9□□□□□ -1.14
VPS53-203ENST00000401468 MRM2Q9UI43 246 aaKnown RBP7.9□□□□□ -1.14
VPS53-203ENST00000401468 LRCH1Q9Y2L9 728 aa7.9□□□□□ -1.14
VPS53-203ENST00000401468 LRP12Q9Y561 859 aa7.9□□□□□ -1.14
VPS53-203ENST00000401468 TMEM129A0AVI4 362 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 C5orf49A4QMS7 147 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 ACOD1A6NK06 481 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 H3BSA7 217 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 EREGO14944 169 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 APOL3O95236 402 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 IGLV3-1P01715 115 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 CD8AP01732 235 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 IGHV4-39P01824 125 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 CRYAAP02489 173 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 APOC1P02654 83 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 CDK1P06493 297 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 HTR1AP08908 422 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 DBHP09172 617 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 FOSL1P15407 271 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 NR4A1P22736 598 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 APLNRP35414 380 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 RGS6P49758 472 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 GDI2P50395 445 aaKnown RBP7.89□□□□□ -1.15
VPS53-203ENST00000401468 ACTA2P62736 377 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 ACTG2P63267 376 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 MVKQ03426 396 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 ST3GAL4Q11206 333 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 IRF3Q14653 427 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 CLEC12BQ2HXU8 276 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 ZNF672Q499Z4 452 aaPredicted RBP7.89□□□□□ -1.15
VPS53-203ENST00000401468 DRAM2Q6UX65 266 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 LRRN1Q6UXK5 716 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 PRSS48Q7RTY5 328 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 ZNF611Q8N823 705 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 OR10H4Q8NGA5 316 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 THEM6Q8WUY1 208 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 DOK1Q99704 481 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 COPS4Q9BT78 406 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 MROQ9BYG7 248 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 ZNF442Q9H7R0 627 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 SCN3BQ9NY72 215 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 POU2F3Q9UKI9 436 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 CAB39Q9Y376 341 aaPredicted RBP7.89□□□□□ -1.15
VPS53-203ENST00000401468 EXOSC1Q9Y3B2 195 aaKnown RBP7.89□□□□□ -1.15
VPS53-203ENST00000401468 TPRKBQ9Y3C4 175 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 ARHGAP32A7KAX9 2087 aa7.89□□□□□ -1.15
VPS53-203ENST00000401468 TANC2Q9HCD6 1990 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 DAPL1A0PJW8 107 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 METTL15A6NJ78 407 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 E7EQL1 145 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 ATP6V1G2-DDX39BF2Z307 99 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms