RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 UPK3AO75631 287 aa9.15□□□□□ -0.95
COL6A3-205ENST00000392004 IRF2P14316 349 aa9.15□□□□□ -0.95
COL6A3-205ENST00000392004 SOX18P35713 384 aa9.15□□□□□ -0.95
COL6A3-205ENST00000392004 PCBD1P61457 104 aa9.15□□□□□ -0.95
COL6A3-205ENST00000392004 TSPAN5P62079 268 aa9.15□□□□□ -0.95
COL6A3-205ENST00000392004 PLCXD3Q63HM9 321 aa9.15□□□□□ -0.95
COL6A3-205ENST00000392004 ZNF774Q6NX45 483 aa9.15□□□□□ -0.95
COL6A3-205ENST00000392004 OR8D4Q8NGM9 314 aa9.15□□□□□ -0.95
COL6A3-205ENST00000392004 OR2T35Q8NGX2 323 aa9.15□□□□□ -0.95
COL6A3-205ENST00000392004 MS4A3Q96HJ5 214 aa9.15□□□□□ -0.95
COL6A3-205ENST00000392004 KCNJ15Q99712 375 aa9.15□□□□□ -0.95
COL6A3-205ENST00000392004 BEX1Q9HBH7 125 aa9.15□□□□□ -0.95
COL6A3-205ENST00000392004 PFDN2Q9UHV9 154 aa9.15□□□□□ -0.95
COL6A3-205ENST00000392004 ATPIF1Q9UII2 106 aa9.15□□□□□ -0.95
COL6A3-205ENST00000392004 SCP2D1Q9UJQ7 156 aa9.15□□□□□ -0.95
COL6A3-205ENST00000392004 FKBP7Q9Y680 259 aa9.15□□□□□ -0.95
COL6A3-205ENST00000392004 RGS9O75916 674 aaPredicted RBP9.14□□□□□ -0.95
COL6A3-205ENST00000392004 HTR3BO95264 441 aa9.14□□□□□ -0.95
COL6A3-205ENST00000392004 TCRBP04435 133 aa9.14□□□□□ -0.95
COL6A3-205ENST00000392004 FRKP42685 505 aaPredicted RBP9.14□□□□□ -0.95
COL6A3-205ENST00000392004 MAGEB1P43366 347 aa9.14□□□□□ -0.95
COL6A3-205ENST00000392004 SUCLG1P53597 346 aaKnown RBP9.14□□□□□ -0.95
COL6A3-205ENST00000392004 TLE1Q04724 770 aa9.14□□□□□ -0.95
COL6A3-205ENST00000392004 LIPNQ5VXI9 398 aa9.14□□□□□ -0.95
COL6A3-205ENST00000392004 PYHIN1Q6K0P9 492 aa9.14□□□□□ -0.95
COL6A3-205ENST00000392004 UNQ6126/PRO20091Q6UXV3 157 aa9.14□□□□□ -0.95
COL6A3-205ENST00000392004 STK35Q8TDR2 534 aa9.14□□□□□ -0.95
COL6A3-205ENST00000392004 DVL3Q92997 716 aaPredicted RBP9.14□□□□□ -0.95
COL6A3-205ENST00000392004 SORCS2Q96PQ0 1159 aa9.14□□□□□ -0.95
COL6A3-205ENST00000392004 SOSTQ9BQB4 213 aa9.14□□□□□ -0.95
COL6A3-205ENST00000392004 LIN7BQ9HAP6 207 aa9.14□□□□□ -0.95
COL6A3-205ENST00000392004 PRSS50Q9UI38 385 aa9.14□□□□□ -0.95
COL6A3-205ENST00000392004 USP9XQ93008 2570 aaPredicted RBP9.14□□□□□ -0.95
COL6A3-205ENST00000392004 TUBAL3A6NHL2 446 aa9.14□□□□□ -0.95
COL6A3-205ENST00000392004 RBMXL2O75526 392 aaKnown RBP9.14□□□□□ -0.95
COL6A3-205ENST00000392004 GIFP27352 417 aa9.14□□□□□ -0.95
COL6A3-205ENST00000392004 AKR1D1P51857 326 aa9.14□□□□□ -0.95
COL6A3-205ENST00000392004 IGLV3-21P80748 117 aaPredicted RBP9.14□□□□□ -0.95
COL6A3-205ENST00000392004 DND1Q8IYX4 353 aaKnown RBP9.14□□□□□ -0.95
COL6A3-205ENST00000392004 LINC01560Q8TB33 94 aa9.14□□□□□ -0.95
COL6A3-205ENST00000392004 MCHR2Q969V1 340 aa9.14□□□□□ -0.95
COL6A3-205ENST00000392004 BORCS8Q96FH0 119 aa9.14□□□□□ -0.95
COL6A3-205ENST00000392004 CHIAQ9BZP6 476 aa9.14□□□□□ -0.95
COL6A3-205ENST00000392004 ACTR6Q9GZN1 396 aa9.14□□□□□ -0.95
COL6A3-205ENST00000392004 OR10A2Q9H208 303 aa9.14□□□□□ -0.95
COL6A3-205ENST00000392004 SF3B6Q9Y3B4 125 aaKnown RBP9.14□□□□□ -0.95
COL6A3-205ENST00000392004 ANKRD30BLA7E2S9 258 aa9.14□□□□□ -0.95
COL6A3-205ENST00000392004 H3BMH7 237 aa9.14□□□□□ -0.95
COL6A3-205ENST00000392004 ZNF32P17041 273 aa9.14□□□□□ -0.95
COL6A3-205ENST00000392004 PITPNAQ00169 270 aa9.14□□□□□ -0.95
COL6A3-205ENST00000392004 HACD4Q5VWC8 232 aa9.14□□□□□ -0.95
COL6A3-205ENST00000392004 GJC3Q8NFK1 279 aa9.14□□□□□ -0.95
COL6A3-205ENST00000392004 OR11H7Q8NGC8 314 aa9.14□□□□□ -0.95
COL6A3-205ENST00000392004 SLC7A10Q9NS82 523 aa9.14□□□□□ -0.95
COL6A3-205ENST00000392004 B9D1Q9UPM9 204 aa9.14□□□□□ -0.95
COL6A3-205ENST00000392004 LOC102725191A0A1B0GVB3 256 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 PLPP3O14495 311 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 SPRY3O43610 288 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 PLA1AQ53H76 456 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 ZNF385CQ66K41 422 aaPredicted RBP9.13□□□□□ -0.95
COL6A3-205ENST00000392004 OR2A2Q6IF42 318 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 LINGO2Q7L985 606 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 BEST4Q8NFU0 473 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 OR13C5Q8NGS8 318 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 HOXB13Q92826 284 aaPredicted RBP9.13□□□□□ -0.95
COL6A3-205ENST00000392004 SLAMF6Q96DU3 332 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 HECTD1Q9ULT8 2610 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 NME2P1O60361 137 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 MPIG6BO95866 241 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 TGM6O95932 706 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 LIMS3P0CW19 117 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 LIMS4P0CW20 117 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 RRASP10301 218 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 SFTPCP11686 197 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 GABRA1P14867 456 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 NME2P22392 152 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 PLA2G5P39877 138 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 BAMBIQ13145 260 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 SLC25A30Q5SVS4 291 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 ZNF610Q8N9Z0 462 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 FAM71CQ8NEG0 241 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 OR51E1Q8TCB6 317 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 ZPLD1Q8TCW7 415 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 TSPAN32Q96QS1 320 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 FREM2Q5SZK8 3169 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 C7orf66A4D0T2 115 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 ZNF878C9JN71 531 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 L7N2F9 121 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 ARL6IP5O75915 188 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 ZNF44P15621 663 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 MTNR1BP49286 362 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 RTP5Q14D33 572 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 PXKQ7Z7A4 578 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 OR1J1Q8NGS3 322 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 TMEM106AQ96A25 262 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 SCMH1Q96GD3 660 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 ZNF416Q9BWM5 594 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 RNF32Q9H0A6 362 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 CMC2Q9NRP2 79 aa9.13□□□□□ -0.95
COL6A3-205ENST00000392004 CYSLTR2Q9NS75 346 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms