RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 KDM4BO94953 1096 aa8.61□□□□□ -1.03
COL6A3-204ENST00000392003 TPOP07202 933 aa8.61□□□□□ -1.03
COL6A3-204ENST00000392003 ITGA5P08648 1049 aa8.61□□□□□ -1.03
COL6A3-204ENST00000392003 PNLIPP16233 465 aa8.61□□□□□ -1.03
COL6A3-204ENST00000392003 CAMK2DQ13557 499 aa8.61□□□□□ -1.03
COL6A3-204ENST00000392003 MS4A18Q3C1V0 323 aa8.61□□□□□ -1.03
COL6A3-204ENST00000392003 DEGS2Q6QHC5 323 aa8.61□□□□□ -1.03
COL6A3-204ENST00000392003 VHLLQ6RSH7 139 aa8.61□□□□□ -1.03
COL6A3-204ENST00000392003 NLRC3Q7RTR2 1065 aa8.61□□□□□ -1.03
COL6A3-204ENST00000392003 MDGA2Q7Z553 956 aa8.61□□□□□ -1.03
COL6A3-204ENST00000392003 LINC00346Q8IVM7 164 aa8.61□□□□□ -1.03
COL6A3-204ENST00000392003 FTMTQ8N4E7 242 aa8.61□□□□□ -1.03
COL6A3-204ENST00000392003 AGBL5Q8NDL9 886 aa8.61□□□□□ -1.03
COL6A3-204ENST00000392003 NFAM1Q8NET5 270 aaPredicted RBP8.61□□□□□ -1.03
COL6A3-204ENST00000392003 SLC26A10Q8NG04 563 aa8.61□□□□□ -1.03
COL6A3-204ENST00000392003 ASB5Q8WWX0 329 aa8.61□□□□□ -1.03
COL6A3-204ENST00000392003 ZNF845Q96IR2 970 aaPredicted RBP8.61□□□□□ -1.03
COL6A3-204ENST00000392003 MRGPRX4Q96LA9 322 aa8.61□□□□□ -1.03
COL6A3-204ENST00000392003 EDEM2Q9BV94 578 aa8.61□□□□□ -1.03
COL6A3-204ENST00000392003 SMOC1Q9H4F8 434 aa8.61□□□□□ -1.03
COL6A3-204ENST00000392003 ALKBH4Q9NXW9 302 aa8.61□□□□□ -1.03
COL6A3-204ENST00000392003 UPB1Q9UBR1 384 aa8.61□□□□□ -1.03
COL6A3-204ENST00000392003 PURGQ9UJV8 347 aaKnown RBP8.61□□□□□ -1.03
COL6A3-204ENST00000392003 C9J4A7 227 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 ANXA7P20073 488 aaKnown RBP8.6□□□□□ -1.03
COL6A3-204ENST00000392003 IL11P20809 199 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 TAGLN2P37802 199 aaKnown RBP8.6□□□□□ -1.03
COL6A3-204ENST00000392003 EIF1AXP47813 144 aaKnown RBP8.6□□□□□ -1.03
COL6A3-204ENST00000392003 BIDP55957 195 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 FMODQ06828 376 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 GLYATL3Q5SZD4 288 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 STPG1Q5TH74 334 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 Q6ZTK2 550 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 WDSUB1Q8N9V3 476 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 UXS1Q8NBZ7 420 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 OR1J4Q8NGS1 313 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 MED29Q9NX70 200 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 CEP192Q8TEP8 1941 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 COL5A1P20908 1838 aaPredicted RBP8.6□□□□□ -1.03
COL6A3-204ENST00000392003 LOC107986453A0A1B0GWG9 222 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 C19orf67A6NJJ6 358 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 NPIPB13A6NJU9 1138 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 NPIPB4C9JG80 1138 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 SNAPC5O75971 98 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 AQP8O94778 261 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 UBCP0CG48 685 aaKnown RBP8.6□□□□□ -1.03
COL6A3-204ENST00000392003 EFNB2P52799 333 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 RAP2BP61225 183 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 SSBP1Q04837 148 aaKnown RBP8.6□□□□□ -1.03
COL6A3-204ENST00000392003 RIPPLY1Q0D2K3 151 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 FAM198BQ6UWH4 519 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 UEVLDQ8IX04 471 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 C12orf45Q8N5I9 185 aaPredicted RBP8.6□□□□□ -1.03
COL6A3-204ENST00000392003 SPICQ8N5J4 248 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 OR4K17Q8NGC6 315 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 OR4C16Q8NGL9 310 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 FOXRED1Q96CU9 486 aaPredicted RBP8.6□□□□□ -1.03
COL6A3-204ENST00000392003 MS4A3Q96HJ5 214 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 GPR61Q9BZJ8 451 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 APMAPQ9HDC9 416 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 TMEM138Q9NPI0 162 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 TMEM272A0A1B0GTI8 110 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 MEIS3P1A6NDR6 274 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 GIPP09681 153 aaPredicted RBP8.6□□□□□ -1.03
COL6A3-204ENST00000392003 FSTP19883 344 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 CLRN1P58418 232 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 SPOCK1Q08629 439 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 TAF13Q15543 124 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 CBLN2Q8IUK8 224 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 SLC38A9Q8NBW4 561 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 OR1M1Q8NGA1 313 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 OR8S1Q8NH09 359 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 RHBDD1Q8TEB9 315 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 LRRC46Q96FV0 321 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 ADAT1Q9BUB4 502 aaKnown RBP8.6□□□□□ -1.03
COL6A3-204ENST00000392003 SUCNR1Q9BXA5 334 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 EXO5Q9H790 373 aa8.6□□□□□ -1.03
COL6A3-204ENST00000392003 TTC28Q96AY4 2481 aa8.59□□□□□ -1.03
COL6A3-204ENST00000392003 LIPT2A6NK58 231 aa8.59□□□□□ -1.03
COL6A3-204ENST00000392003 TIAF1O95411 115 aa8.59□□□□□ -1.03
COL6A3-204ENST00000392003 LPLP06858 475 aa8.59□□□□□ -1.03
COL6A3-204ENST00000392003 CPN1P15169 458 aa8.59□□□□□ -1.03
COL6A3-204ENST00000392003 ZNF16P17020 682 aaPredicted RBP8.59□□□□□ -1.03
COL6A3-204ENST00000392003 SELENOPP49908 381 aa8.59□□□□□ -1.03
COL6A3-204ENST00000392003 DLX5P56178 289 aa8.59□□□□□ -1.03
COL6A3-204ENST00000392003 GUCA2AQ02747 115 aa8.59□□□□□ -1.03
COL6A3-204ENST00000392003 OVCH2Q7RTZ1 564 aa8.59□□□□□ -1.03
COL6A3-204ENST00000392003 ADGRE4PQ86SQ3 457 aa8.59□□□□□ -1.03
COL6A3-204ENST00000392003 NKAIN3Q8N8D7 197 aa8.59□□□□□ -1.03
COL6A3-204ENST00000392003 OR2AJ1Q8NGZ0 328 aa8.59□□□□□ -1.03
COL6A3-204ENST00000392003 TNFAIP8L1Q8WVP5 186 aa8.59□□□□□ -1.03
COL6A3-204ENST00000392003 KCNK17Q96T54 332 aa8.59□□□□□ -1.03
COL6A3-204ENST00000392003 EMC6Q9BV81 110 aa8.59□□□□□ -1.03
COL6A3-204ENST00000392003 PTGES2Q9H7Z7 377 aa8.59□□□□□ -1.03
COL6A3-204ENST00000392003 SEC61A2Q9H9S3 476 aa8.59□□□□□ -1.03
COL6A3-204ENST00000392003 OCIAD1Q9NX40 245 aa8.59□□□□□ -1.03
COL6A3-204ENST00000392003 CGGBP1Q9UFW8 167 aaPredicted RBP8.59□□□□□ -1.03
COL6A3-204ENST00000392003 UBQLN2Q9UHD9 624 aa8.59□□□□□ -1.03
COL6A3-204ENST00000392003 PCDHB10Q9UN67 800 aa8.59□□□□□ -1.03
COL6A3-204ENST00000392003 GAB2Q9UQC2 676 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms