RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 RUNX3Q13761 415 aa13.12□□□□□ -0.31
VPS9D1-201ENST00000389386 PDGFRLQ15198 375 aa13.12□□□□□ -0.31
VPS9D1-201ENST00000389386 HIST2H2BEQ16778 126 aa13.12□□□□□ -0.31
VPS9D1-201ENST00000389386 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.12□□□□□ -0.31
VPS9D1-201ENST00000389386 PARM1Q6UWI2 310 aa13.12□□□□□ -0.31
VPS9D1-201ENST00000389386 TRAPPC6BQ86SZ2 158 aa13.12□□□□□ -0.31
VPS9D1-201ENST00000389386 OR9K2Q8NGE7 335 aa13.12□□□□□ -0.31
VPS9D1-201ENST00000389386 MARCH1Q8TCQ1 289 aa13.12□□□□□ -0.31
VPS9D1-201ENST00000389386 HIST1H2BHQ93079 126 aa13.12□□□□□ -0.31
VPS9D1-201ENST00000389386 GNRHR2Q96P88 292 aa13.12□□□□□ -0.31
VPS9D1-201ENST00000389386 HIST1H2BNQ99877 126 aa13.12□□□□□ -0.31
VPS9D1-201ENST00000389386 HIST1H2BMQ99879 126 aa13.12□□□□□ -0.31
VPS9D1-201ENST00000389386 APOBEC3BQ9UH17 382 aaKnown RBP13.12□□□□□ -0.31
VPS9D1-201ENST00000389386 ZNF724A8MTY0 619 aa13.11□□□□□ -0.31
VPS9D1-201ENST00000389386 PPP1R2P9O14990 202 aa13.11□□□□□ -0.31
VPS9D1-201ENST00000389386 CDK3Q00526 305 aa13.11□□□□□ -0.31
VPS9D1-201ENST00000389386 OR8G1Q15617 311 aa13.11□□□□□ -0.31
VPS9D1-201ENST00000389386 ADGRE4PQ86SQ3 457 aa13.11□□□□□ -0.31
VPS9D1-201ENST00000389386 OR4N5Q8IXE1 308 aa13.11□□□□□ -0.31
VPS9D1-201ENST00000389386 COX18Q8N8Q8 333 aa13.11□□□□□ -0.31
VPS9D1-201ENST00000389386 RSC1A1Q92681 617 aa13.11□□□□□ -0.31
VPS9D1-201ENST00000389386 THRSPQ92748 146 aa13.11□□□□□ -0.31
VPS9D1-201ENST00000389386 ZNF587Q96SQ5 575 aaPredicted RBP13.11□□□□□ -0.31
VPS9D1-201ENST00000389386 NUDT9Q9BW91 350 aa13.11□□□□□ -0.31
VPS9D1-201ENST00000389386 TRIM2Q9C040 744 aa13.11□□□□□ -0.31
VPS9D1-201ENST00000389386 CGGBP1Q9UFW8 167 aaPredicted RBP13.11□□□□□ -0.31
VPS9D1-201ENST00000389386 ZNF587BE7ETH6 402 aa13.11□□□□□ -0.31
VPS9D1-201ENST00000389386 HCKP08631 526 aa13.11□□□□□ -0.31
VPS9D1-201ENST00000389386 CD37P11049 281 aa13.11□□□□□ -0.31
VPS9D1-201ENST00000389386 NR2C1P13056 603 aa13.11□□□□□ -0.31
VPS9D1-201ENST00000389386 THBS4P35443 961 aa13.11□□□□□ -0.31
VPS9D1-201ENST00000389386 DPTQ07507 201 aa13.11□□□□□ -0.31
VPS9D1-201ENST00000389386 USF2Q15853 346 aaPredicted RBP13.11□□□□□ -0.31
VPS9D1-201ENST00000389386 C14orf28Q4W4Y0 310 aa13.11□□□□□ -0.31
VPS9D1-201ENST00000389386 TMEM225Q6GV28 225 aa13.11□□□□□ -0.31
VPS9D1-201ENST00000389386 MDGA2Q7Z553 956 aa13.11□□□□□ -0.31
VPS9D1-201ENST00000389386 ZAR1Q86SH2 424 aa13.11□□□□□ -0.31
VPS9D1-201ENST00000389386 HOGA1Q86XE5 327 aa13.11□□□□□ -0.31
VPS9D1-201ENST00000389386 ZNF615Q8N8J6 731 aa13.11□□□□□ -0.31
VPS9D1-201ENST00000389386 OR10C1Q96KK4 312 aa13.11□□□□□ -0.31
VPS9D1-201ENST00000389386 STACQ99469 402 aa13.11□□□□□ -0.31
VPS9D1-201ENST00000389386 CDCA3Q99618 268 aaPredicted RBP13.11□□□□□ -0.31
VPS9D1-201ENST00000389386 TWSG1Q9GZX9 223 aa13.11□□□□□ -0.31
VPS9D1-201ENST00000389386 SLC35B3Q9H1N7 401 aa13.11□□□□□ -0.31
VPS9D1-201ENST00000389386 SLC26A1Q9H2B4 701 aa13.11□□□□□ -0.31
VPS9D1-201ENST00000389386 PTGES2Q9H7Z7 377 aa13.11□□□□□ -0.31
VPS9D1-201ENST00000389386 OR5H15A6NDH6 313 aa13.1□□□□□ -0.31
VPS9D1-201ENST00000389386 OR5H1A6NKK0 313 aa13.1□□□□□ -0.31
VPS9D1-201ENST00000389386 ALOX5APP20292 161 aa13.1□□□□□ -0.31
VPS9D1-201ENST00000389386 RPS27P42677 84 aaKnown RBP13.1□□□□□ -0.31
VPS9D1-201ENST00000389386 BTN3A2P78410 334 aa13.1□□□□□ -0.31
VPS9D1-201ENST00000389386 IL15RAQ13261 267 aa13.1□□□□□ -0.31
VPS9D1-201ENST00000389386 PPA1Q15181 289 aa13.1□□□□□ -0.31
VPS9D1-201ENST00000389386 ZNF260Q3ZCT1 412 aa13.1□□□□□ -0.31
VPS9D1-201ENST00000389386 C2orf27AQ580R0 203 aa13.1□□□□□ -0.31
VPS9D1-201ENST00000389386 TMEM128Q5BJH2 165 aa13.1□□□□□ -0.31
VPS9D1-201ENST00000389386 PDZD11Q5EBL8 140 aa13.1□□□□□ -0.31
VPS9D1-201ENST00000389386 CMKLR1Q99788 373 aa13.1□□□□□ -0.31
VPS9D1-201ENST00000389386 SRA1Q9HD15 236 aaKnown RBP13.1□□□□□ -0.31
VPS9D1-201ENST00000389386 KCNJ16Q9NPI9 418 aa13.1□□□□□ -0.31
VPS9D1-201ENST00000389386 MKKSQ9NPJ1 570 aaPredicted RBP13.1□□□□□ -0.31
VPS9D1-201ENST00000389386 FAM86C1Q9NVL1 165 aa13.1□□□□□ -0.31
VPS9D1-201ENST00000389386 C19orf53Q9UNZ5 99 aaPredicted RBP13.1□□□□□ -0.31
VPS9D1-201ENST00000389386 SCN3AQ9NY46 2000 aa13.1□□□□□ -0.31
VPS9D1-201ENST00000389386 ELOA3CA0A087WX78 387 aaPredicted RBP13.1□□□□□ -0.31
VPS9D1-201ENST00000389386 A8MWP6 167 aa13.1□□□□□ -0.31
VPS9D1-201ENST00000389386 GAPDHP04406 335 aaKnown RBP13.1□□□□□ -0.31
VPS9D1-201ENST00000389386 GDI1P31150 447 aa13.1□□□□□ -0.31
VPS9D1-201ENST00000389386 FAM3AP98173 230 aa13.1□□□□□ -0.31
VPS9D1-201ENST00000389386 NHLH2Q02577 135 aa13.1□□□□□ -0.31
VPS9D1-201ENST00000389386 ZNF674Q2M3X9 581 aa13.1□□□□□ -0.31
VPS9D1-201ENST00000389386 TMEM52BQ4KMG9 183 aa13.1□□□□□ -0.31
VPS9D1-201ENST00000389386 ZNF529Q6P280 563 aa13.1□□□□□ -0.31
VPS9D1-201ENST00000389386 TAF8Q7Z7C8 310 aa13.1□□□□□ -0.31
VPS9D1-201ENST00000389386 AVL9Q8NBF6 648 aa13.1□□□□□ -0.31
VPS9D1-201ENST00000389386 POC1AQ8NBT0 407 aa13.1□□□□□ -0.31
VPS9D1-201ENST00000389386 OR10AD1Q8NGE0 317 aa13.1□□□□□ -0.31
VPS9D1-201ENST00000389386 POM121Q96HA1 1249 aa13.1□□□□□ -0.31
VPS9D1-201ENST00000389386 DUSP22Q9NRW4 184 aa13.1□□□□□ -0.31
VPS9D1-201ENST00000389386 PRR13Q9NZ81 148 aa13.1□□□□□ -0.31
VPS9D1-201ENST00000389386 THAP10Q9P2Z0 257 aaPredicted RBP13.1□□□□□ -0.31
VPS9D1-201ENST00000389386 NME2P1O60361 137 aa13.09□□□□□ -0.31
VPS9D1-201ENST00000389386 ZNF354AO60765 605 aaPredicted RBP13.09□□□□□ -0.31
VPS9D1-201ENST00000389386 SNRPCP09234 159 aaKnown RBP13.09□□□□□ -0.31
VPS9D1-201ENST00000389386 RNH1P13489 461 aaKnown RBP13.09□□□□□ -0.31
VPS9D1-201ENST00000389386 LTBRP36941 435 aa13.09□□□□□ -0.31
VPS9D1-201ENST00000389386 TSFMP43897 325 aaKnown RBP13.09□□□□□ -0.31
VPS9D1-201ENST00000389386 EMDP50402 254 aa13.09□□□□□ -0.31
VPS9D1-201ENST00000389386 EGR3Q06889 387 aa13.09□□□□□ -0.31
VPS9D1-201ENST00000389386 FHL5Q5TD97 284 aa13.09□□□□□ -0.31
VPS9D1-201ENST00000389386 AGBL4Q5VU57 503 aa13.09□□□□□ -0.31
VPS9D1-201ENST00000389386 KIRREL2Q6UWL6 708 aa13.09□□□□□ -0.31
VPS9D1-201ENST00000389386 MED25Q71SY5 747 aa13.09□□□□□ -0.31
VPS9D1-201ENST00000389386 DPY19L4Q7Z388 723 aa13.09□□□□□ -0.31
VPS9D1-201ENST00000389386 YAF2Q8IY57 180 aa13.09□□□□□ -0.31
VPS9D1-201ENST00000389386 C2orf50Q96LR7 162 aa13.09□□□□□ -0.31
VPS9D1-201ENST00000389386 SCN2AQ99250 2005 aa13.09□□□□□ -0.31
VPS9D1-201ENST00000389386 RAB27BO00194 218 aa13.09□□□□□ -0.31
VPS9D1-201ENST00000389386 ADAM10O14672 748 aa13.09□□□□□ -0.31
VPS9D1-201ENST00000389386 NUDT21O43809 227 aaKnown RBP13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms