RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 ZNF217O75362 1048 aa10.8□□□□□ -0.68
CLIP3-201ENST00000360535 CRTAPO75718 401 aaPredicted RBP10.8□□□□□ -0.68
CLIP3-201ENST00000360535 OR2F2O95006 317 aa10.8□□□□□ -0.68
CLIP3-201ENST00000360535 FARS2O95363 451 aaKnown RBP10.8□□□□□ -0.68
CLIP3-201ENST00000360535 KNG1P01042 644 aa10.8□□□□□ -0.68
CLIP3-201ENST00000360535 HOXB5P09067 269 aa10.8□□□□□ -0.68
CLIP3-201ENST00000360535 ANOS1P23352 680 aa10.8□□□□□ -0.68
CLIP3-201ENST00000360535 OR3A4PP47883 348 aa10.8□□□□□ -0.68
CLIP3-201ENST00000360535 BLOC1S1P78537 153 aa10.8□□□□□ -0.68
CLIP3-201ENST00000360535 AIMP2Q13155 320 aaKnown RBP10.8□□□□□ -0.68
CLIP3-201ENST00000360535 OR2F1Q13607 317 aa10.8□□□□□ -0.68
CLIP3-201ENST00000360535 PAN3Q58A45 887 aaKnown RBP10.8□□□□□ -0.68
CLIP3-201ENST00000360535 DNM1P34Q6PK57 102 aa10.8□□□□□ -0.68
CLIP3-201ENST00000360535 H1FNTQ75WM6 255 aaPredicted RBP10.8□□□□□ -0.68
CLIP3-201ENST00000360535 HRH4Q9H3N8 390 aa10.8□□□□□ -0.68
CLIP3-201ENST00000360535 MMACHCQ9Y4U1 282 aa10.8□□□□□ -0.68
CLIP3-201ENST00000360535 FAM186AA6NE01 2351 aa10.8□□□□□ -0.68
CLIP3-201ENST00000360535 NCOA6Q14686 2063 aaPredicted RBP10.79□□□□□ -0.68
CLIP3-201ENST00000360535 C2CD4DB7Z1M9 353 aa10.79□□□□□ -0.68
CLIP3-201ENST00000360535 RAB3AP20336 220 aa10.79□□□□□ -0.68
CLIP3-201ENST00000360535 PDSS1Q5T2R2 415 aa10.79□□□□□ -0.68
CLIP3-201ENST00000360535 SLC25A42Q86VD7 318 aa10.79□□□□□ -0.68
CLIP3-201ENST00000360535 PARP12Q9H0J9 701 aaKnown RBP10.79□□□□□ -0.68
CLIP3-201ENST00000360535 ZNF768Q9H5H4 540 aaKnown RBP10.79□□□□□ -0.68
CLIP3-201ENST00000360535 HPF1Q9NWY4 346 aa10.79□□□□□ -0.68
CLIP3-201ENST00000360535 OR6C76A6NM76 312 aa10.79□□□□□ -0.68
CLIP3-201ENST00000360535 SULT2B1O00204 365 aa10.79□□□□□ -0.68
CLIP3-201ENST00000360535 GP1BAP07359 652 aa10.79□□□□□ -0.68
CLIP3-201ENST00000360535 SFTPBP07988 381 aa10.79□□□□□ -0.68
CLIP3-201ENST00000360535 PNLIPRP2P54317 469 aa10.79□□□□□ -0.68
CLIP3-201ENST00000360535 PRSS12P56730 875 aa10.79□□□□□ -0.68
CLIP3-201ENST00000360535 CLRN1P58418 232 aa10.79□□□□□ -0.68
CLIP3-201ENST00000360535 HSD11B2P80365 405 aa10.79□□□□□ -0.68
CLIP3-201ENST00000360535 HAGHLQ6PII5 290 aaPredicted RBP10.79□□□□□ -0.68
CLIP3-201ENST00000360535 OR4K17Q8NGC6 315 aa10.79□□□□□ -0.68
CLIP3-201ENST00000360535 OR5D14Q8NGL3 314 aa10.79□□□□□ -0.68
CLIP3-201ENST00000360535 ASB10Q8WXI3 467 aa10.79□□□□□ -0.68
CLIP3-201ENST00000360535 SLCO5A1Q9H2Y9 848 aa10.79□□□□□ -0.68
CLIP3-201ENST00000360535 ASH2LQ9UBL3 628 aa10.79□□□□□ -0.68
CLIP3-201ENST00000360535 MLXQ9UH92 298 aa10.79□□□□□ -0.68
CLIP3-201ENST00000360535 FAM96BQ9Y3D0 163 aa10.79□□□□□ -0.68
CLIP3-201ENST00000360535 A0A1B0GTI1 187 aa10.79□□□□□ -0.68
CLIP3-201ENST00000360535 HSPB2A8KAH6 182 aa10.79□□□□□ -0.68
CLIP3-201ENST00000360535 RER1O15258 196 aa10.79□□□□□ -0.68
CLIP3-201ENST00000360535 EFSO43281 561 aa10.79□□□□□ -0.68
CLIP3-201ENST00000360535 NPIPB7O75200 414 aa10.79□□□□□ -0.68
CLIP3-201ENST00000360535 SNAPC5O75971 98 aa10.79□□□□□ -0.68
CLIP3-201ENST00000360535 PSMB6P28072 239 aa10.79□□□□□ -0.68
CLIP3-201ENST00000360535 CCR5P51681 352 aa10.79□□□□□ -0.68
CLIP3-201ENST00000360535 HSPB2Q16082 182 aa10.79□□□□□ -0.68
CLIP3-201ENST00000360535 PLEKHN1Q494U1 663 aaPredicted RBP10.79□□□□□ -0.68
CLIP3-201ENST00000360535 ZNF813Q6ZN06 617 aa10.79□□□□□ -0.68
CLIP3-201ENST00000360535 SLC22A24Q8N4F4 322 aa10.79□□□□□ -0.68
CLIP3-201ENST00000360535 OR2AJ1Q8NGZ0 328 aa10.79□□□□□ -0.68
CLIP3-201ENST00000360535 TMEM234Q8WY98 164 aa10.79□□□□□ -0.68
CLIP3-201ENST00000360535 AQP3Q92482 292 aa10.79□□□□□ -0.68
CLIP3-201ENST00000360535 FN3KRPQ9HA64 309 aa10.79□□□□□ -0.68
CLIP3-201ENST00000360535 FGF21Q9NSA1 209 aa10.79□□□□□ -0.68
CLIP3-201ENST00000360535 RPH3AQ9Y2J0 694 aaPredicted RBP10.79□□□□□ -0.68
CLIP3-201ENST00000360535 MRPS28Q9Y2Q9 187 aaKnown RBP10.79□□□□□ -0.68
CLIP3-201ENST00000360535 IGKV3D-11A0A0A0MRZ8 115 aa10.78□□□□□ -0.68
CLIP3-201ENST00000360535 CD74P04233 296 aa10.78□□□□□ -0.68
CLIP3-201ENST00000360535 RNF4P78317 190 aa10.78□□□□□ -0.68
CLIP3-201ENST00000360535 SSBP1Q04837 148 aaKnown RBP10.78□□□□□ -0.68
CLIP3-201ENST00000360535 NKAPLQ5M9Q1 402 aa10.78□□□□□ -0.68
CLIP3-201ENST00000360535 ZNF585AQ6P3V2 769 aa10.78□□□□□ -0.68
CLIP3-201ENST00000360535 MOB3CQ70IA8 216 aa10.78□□□□□ -0.68
CLIP3-201ENST00000360535 FAM57BQ71RH2 274 aa10.78□□□□□ -0.68
CLIP3-201ENST00000360535 CLRN3Q8NCR9 226 aa10.78□□□□□ -0.68
CLIP3-201ENST00000360535 ZNF775Q96BV0 537 aaPredicted RBP10.78□□□□□ -0.68
CLIP3-201ENST00000360535 CA14Q9ULX7 337 aa10.78□□□□□ -0.68
CLIP3-201ENST00000360535 ABCD4O14678 606 aa10.78□□□□□ -0.68
CLIP3-201ENST00000360535 ZNF205O95201 554 aa10.78□□□□□ -0.68
CLIP3-201ENST00000360535 CD8AP01732 235 aa10.78□□□□□ -0.68
CLIP3-201ENST00000360535 KLK2P20151 261 aa10.78□□□□□ -0.68
CLIP3-201ENST00000360535 SLC6A9P48067 706 aa10.78□□□□□ -0.68
CLIP3-201ENST00000360535 DCAF7P61962 342 aa10.78□□□□□ -0.68
CLIP3-201ENST00000360535 MICBQ29980 383 aa10.78□□□□□ -0.68
CLIP3-201ENST00000360535 ZFP82Q8N141 532 aa10.78□□□□□ -0.68
CLIP3-201ENST00000360535 ZNF283Q8N7M2 679 aa10.78□□□□□ -0.68
CLIP3-201ENST00000360535 RAB3CQ96E17 227 aa10.78□□□□□ -0.68
CLIP3-201ENST00000360535 OR5B2Q96R09 309 aa10.78□□□□□ -0.68
CLIP3-201ENST00000360535 C8orf33Q9H7E9 229 aaPredicted RBP10.78□□□□□ -0.68
CLIP3-201ENST00000360535 GPR84Q9NQS5 396 aa10.78□□□□□ -0.68
CLIP3-201ENST00000360535 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.77□□□□□ -0.68
CLIP3-201ENST00000360535 MSGN1A6NI15 193 aa10.77□□□□□ -0.68
CLIP3-201ENST00000360535 VSTM2BA6NLU5 285 aa10.77□□□□□ -0.68
CLIP3-201ENST00000360535 LDLRAD4O15165 306 aa10.77□□□□□ -0.68
CLIP3-201ENST00000360535 SSX5O60225 188 aa10.77□□□□□ -0.68
CLIP3-201ENST00000360535 MTRF1O75570 445 aaKnown RBP10.77□□□□□ -0.68
CLIP3-201ENST00000360535 GLI4P10075 376 aa10.77□□□□□ -0.68
CLIP3-201ENST00000360535 OR3A2P47893 321 aa10.77□□□□□ -0.68
CLIP3-201ENST00000360535 DHPSP49366 369 aaPredicted RBP10.77□□□□□ -0.68
CLIP3-201ENST00000360535 DAP3P51398 398 aaKnown RBP10.77□□□□□ -0.68
CLIP3-201ENST00000360535 CLDN6P56747 220 aa10.77□□□□□ -0.68
CLIP3-201ENST00000360535 CFHR1Q03591 330 aa10.77□□□□□ -0.68
CLIP3-201ENST00000360535 SGCAQ16586 387 aa10.77□□□□□ -0.68
CLIP3-201ENST00000360535 NAA40Q86UY6 237 aa10.77□□□□□ -0.68
CLIP3-201ENST00000360535 PUSL1Q8N0Z8 303 aaKnown RBP10.77□□□□□ -0.68
CLIP3-201ENST00000360535 MITD1Q8WV92 249 aa10.77□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms