RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 GPX8Q8TED1 209 aa17.69■□□□□ 0.42
CCDC88B-202ENST00000356786 RNF150Q9ULK6 438 aa17.69■□□□□ 0.42
CCDC88B-202ENST00000356786 SIGLEC7Q9Y286 467 aa17.69■□□□□ 0.42
CCDC88B-202ENST00000356786 BTBD17A6NE02 478 aa17.68■□□□□ 0.42
CCDC88B-202ENST00000356786 G3V3Q6 166 aa17.68■□□□□ 0.42
CCDC88B-202ENST00000356786 MIXL1Q9H2W2 232 aa17.68■□□□□ 0.42
CCDC88B-202ENST00000356786 MOB1AQ9H8S9 216 aa17.68■□□□□ 0.42
CCDC88B-202ENST00000356786 ARSJQ5FYB0 599 aaPredicted RBP17.68■□□□□ 0.42
CCDC88B-202ENST00000356786 ZNF626Q68DY1 528 aa17.68■□□□□ 0.42
CCDC88B-202ENST00000356786 RTL10Q7L3V2 364 aa17.68■□□□□ 0.42
CCDC88B-202ENST00000356786 ARRDC1Q8N5I2 433 aa17.68■□□□□ 0.42
CCDC88B-202ENST00000356786 BHLHE23Q8NDY6 225 aa17.68■□□□□ 0.42
CCDC88B-202ENST00000356786 NXPE3Q969Y0 559 aa17.68■□□□□ 0.42
CCDC88B-202ENST00000356786 C12orf10Q9HB07 376 aa17.68■□□□□ 0.42
CCDC88B-202ENST00000356786 HMSDA8MTL9 139 aa17.68■□□□□ 0.42
CCDC88B-202ENST00000356786 METTL15P1P0C7V9 234 aa17.68■□□□□ 0.42
CCDC88B-202ENST00000356786 DMRTC1Q5HYR2 192 aa17.68■□□□□ 0.42
CCDC88B-202ENST00000356786 OR2A1Q8NGT9 310 aa17.68■□□□□ 0.42
CCDC88B-202ENST00000356786 SLC37A2Q8TED4 501 aa17.68■□□□□ 0.42
CCDC88B-202ENST00000356786 MED29Q9NX70 200 aa17.68■□□□□ 0.42
CCDC88B-202ENST00000356786 FGF7P21781 194 aa17.68■□□□□ 0.42
CCDC88B-202ENST00000356786 CD1CP29017 333 aa17.68■□□□□ 0.42
CCDC88B-202ENST00000356786 BTNL8Q6UX41 500 aa17.68■□□□□ 0.42
CCDC88B-202ENST00000356786 DTWD2Q8NBA8 298 aa17.68■□□□□ 0.42
CCDC88B-202ENST00000356786 OR51F2Q8NH61 342 aa17.68■□□□□ 0.42
CCDC88B-202ENST00000356786 LHFPL5Q8TAF8 219 aa17.68■□□□□ 0.42
CCDC88B-202ENST00000356786 WDR1O75083 606 aa17.67■□□□□ 0.42
CCDC88B-202ENST00000356786 CST4P01036 141 aa17.67■□□□□ 0.42
CCDC88B-202ENST00000356786 VAMP3Q15836 100 aa17.67■□□□□ 0.42
CCDC88B-202ENST00000356786 BVESQ8NE79 360 aa17.67■□□□□ 0.42
CCDC88B-202ENST00000356786 OR4N2Q8NGD1 307 aa17.67■□□□□ 0.42
CCDC88B-202ENST00000356786 THAP10Q9P2Z0 257 aaPredicted RBP17.67■□□□□ 0.42
CCDC88B-202ENST00000356786 OR5V1Q9UGF6 321 aa17.67■□□□□ 0.42
CCDC88B-202ENST00000356786 TNFRSF4P43489 277 aa17.67■□□□□ 0.42
CCDC88B-202ENST00000356786 EMDP50402 254 aa17.67■□□□□ 0.42
CCDC88B-202ENST00000356786 RAE1P78406 368 aaKnown RBP17.67■□□□□ 0.42
CCDC88B-202ENST00000356786 C8orf82Q6P1X6 216 aaPredicted RBP17.67■□□□□ 0.42
CCDC88B-202ENST00000356786 COMMD1Q8N668 190 aa17.67■□□□□ 0.42
CCDC88B-202ENST00000356786 SIGLECL1Q8N7X8 197 aa17.67■□□□□ 0.42
CCDC88B-202ENST00000356786 VN1R2Q8NFZ6 395 aa17.67■□□□□ 0.42
CCDC88B-202ENST00000356786 C16orf52Q8NHV5 167 aa17.67■□□□□ 0.42
CCDC88B-202ENST00000356786 ARHGDIGQ99819 225 aa17.67■□□□□ 0.42
CCDC88B-202ENST00000356786 ZNF251Q9BRH9 671 aa17.67■□□□□ 0.42
CCDC88B-202ENST00000356786 FAM103A1Q9BTL3 118 aaKnown RBP17.67■□□□□ 0.42
CCDC88B-202ENST00000356786 ZMAT5Q9UDW3 170 aaKnown RBP17.67■□□□□ 0.42
CCDC88B-202ENST00000356786 ANGPTL7O43827 346 aa17.67■□□□□ 0.42
CCDC88B-202ENST00000356786 GABRA1P14867 456 aa17.67■□□□□ 0.42
CCDC88B-202ENST00000356786 C19orf57Q0VDD7 668 aa17.67■□□□□ 0.42
CCDC88B-202ENST00000356786 HGDQ93099 445 aa17.67■□□□□ 0.42
CCDC88B-202ENST00000356786 PRRX2Q99811 253 aa17.67■□□□□ 0.42
CCDC88B-202ENST00000356786 NOSIPQ9Y314 301 aaKnown RBP17.67■□□□□ 0.42
CCDC88B-202ENST00000356786 SSC5DA1L4H1 1573 aa17.67■□□□□ 0.42
CCDC88B-202ENST00000356786 LINC00862A6NCI5 91 aa17.67■□□□□ 0.42
CCDC88B-202ENST00000356786 SCRG1O75711 98 aa17.67■□□□□ 0.42
CCDC88B-202ENST00000356786 QDPRP09417 244 aa17.67■□□□□ 0.42
CCDC88B-202ENST00000356786 CTXN2P0C2S0 81 aa17.67■□□□□ 0.42
CCDC88B-202ENST00000356786 PPP1R1AQ13522 171 aa17.67■□□□□ 0.42
CCDC88B-202ENST00000356786 ELAVL1Q15717 326 aaKnown RBP17.67■□□□□ 0.42
CCDC88B-202ENST00000356786 SYT13Q7L8C5 426 aa17.67■□□□□ 0.42
CCDC88B-202ENST00000356786 BARHL1Q9BZE3 327 aa17.67■□□□□ 0.42
CCDC88B-202ENST00000356786 ZIC2O95409 532 aaPredicted RBP17.66■□□□□ 0.42
CCDC88B-202ENST00000356786 MZT1Q08AG7 82 aa17.66■□□□□ 0.42
CCDC88B-202ENST00000356786 MS4A7Q9GZW8 240 aaPredicted RBP17.66■□□□□ 0.42
CCDC88B-202ENST00000356786 LMAN1LQ9HAT1 526 aa17.66■□□□□ 0.42
CCDC88B-202ENST00000356786 ADAMTSL1Q8N6G6 1762 aa17.66■□□□□ 0.42
CCDC88B-202ENST00000356786 CBY3A6NI87 242 aa17.66■□□□□ 0.42
CCDC88B-202ENST00000356786 DVL1P1P54792 670 aaPredicted RBP17.66■□□□□ 0.42
CCDC88B-202ENST00000356786 IL10RAQ13651 578 aa17.66■□□□□ 0.42
CCDC88B-202ENST00000356786 KCNAB1Q14722 419 aa17.66■□□□□ 0.42
CCDC88B-202ENST00000356786 MPPED2Q15777 294 aa17.66■□□□□ 0.42
CCDC88B-202ENST00000356786 SEZ6L2Q6UXD5 910 aa17.66■□□□□ 0.42
CCDC88B-202ENST00000356786 TMPRSS11FQ6ZWK6 438 aa17.66■□□□□ 0.42
CCDC88B-202ENST00000356786 PHYHIPLQ96FC7 376 aa17.66■□□□□ 0.42
CCDC88B-202ENST00000356786 C19orf43Q9BQ61 176 aa17.66■□□□□ 0.42
CCDC88B-202ENST00000356786 PBOV1Q9GZY1 135 aa17.66■□□□□ 0.42
CCDC88B-202ENST00000356786 PRO1933Q9H354 126 aa17.66■□□□□ 0.42
CCDC88B-202ENST00000356786 TXNIPQ9H3M7 391 aa17.66■□□□□ 0.42
CCDC88B-202ENST00000356786 A6NCN8 305 aa17.66■□□□□ 0.42
CCDC88B-202ENST00000356786 APOBEC1P41238 236 aaKnown RBP17.66■□□□□ 0.42
CCDC88B-202ENST00000356786 CNEP1R1Q8N9A8 125 aa17.66■□□□□ 0.42
CCDC88B-202ENST00000356786 LHX6Q9UPM6 363 aa17.66■□□□□ 0.42
CCDC88B-202ENST00000356786 B9D1Q9UPM9 204 aa17.66■□□□□ 0.42
CCDC88B-202ENST00000356786 RAB27BO00194 218 aa17.66■□□□□ 0.42
CCDC88B-202ENST00000356786 HS3ST1O14792 307 aa17.66■□□□□ 0.42
CCDC88B-202ENST00000356786 CST7O76096 145 aa17.66■□□□□ 0.42
CCDC88B-202ENST00000356786 SLC10A1Q14973 349 aa17.66■□□□□ 0.42
CCDC88B-202ENST00000356786 ZNF79Q15937 498 aa17.66■□□□□ 0.42
CCDC88B-202ENST00000356786 FBXL6Q8N531 539 aa17.66■□□□□ 0.42
CCDC88B-202ENST00000356786 EDAQ92838 391 aa17.66■□□□□ 0.42
CCDC88B-202ENST00000356786 ZG16BQ96DA0 208 aa17.66■□□□□ 0.42
CCDC88B-202ENST00000356786 C20orf141Q9NUB4 165 aa17.66■□□□□ 0.42
CCDC88B-202ENST00000356786 LY75O60449 1722 aa17.65■□□□□ 0.42
CCDC88B-202ENST00000356786 MPC2O95563 127 aa17.65■□□□□ 0.42
CCDC88B-202ENST00000356786 CALCRP30988 508 aa17.65■□□□□ 0.42
CCDC88B-202ENST00000356786 PLA1AQ53H76 456 aa17.65■□□□□ 0.42
CCDC88B-202ENST00000356786 AGBL4Q5VU57 503 aa17.65■□□□□ 0.42
CCDC88B-202ENST00000356786 ZNF429Q86V71 674 aa17.65■□□□□ 0.42
CCDC88B-202ENST00000356786 MAML2Q8IZL2 1156 aaPredicted RBP17.65■□□□□ 0.42
CCDC88B-202ENST00000356786 ZNF320A2RRD8 509 aa17.65■□□□□ 0.42
CCDC88B-202ENST00000356786 CARD18P57730 90 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms