RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 IL11RAQ14626 422 aa2□□□□□ -2.09
VPS54-202ENST00000354504 QPRTQ15274 297 aa2□□□□□ -2.09
VPS54-202ENST00000354504 ST3GAL2Q16842 350 aa2□□□□□ -2.09
VPS54-202ENST00000354504 DGUOKQ16854 277 aa2□□□□□ -2.09
VPS54-202ENST00000354504 C1orf140Q5VVS0 124 aa2□□□□□ -2.09
VPS54-202ENST00000354504 ARHGAP11AQ6P4F7 1023 aa2□□□□□ -2.09
VPS54-202ENST00000354504 RPL22L1Q6P5R6 122 aaKnown RBP2□□□□□ -2.09
VPS54-202ENST00000354504 CFAP161Q6P656 301 aa2□□□□□ -2.09
VPS54-202ENST00000354504 GSG1LQ6UXU4 331 aa2□□□□□ -2.09
VPS54-202ENST00000354504 Q6ZTK2 550 aa2□□□□□ -2.09
VPS54-202ENST00000354504 CPEB2Q7Z5Q1 589 aaKnown RBP2□□□□□ -2.09
VPS54-202ENST00000354504 NAA40Q86UY6 237 aa2□□□□□ -2.09
VPS54-202ENST00000354504 RANBP3LQ86VV4 465 aaPredicted RBP2□□□□□ -2.09
VPS54-202ENST00000354504 TPRA1Q86W33 373 aa2□□□□□ -2.09
VPS54-202ENST00000354504 BEST3Q8N1M1 668 aa2□□□□□ -2.09
VPS54-202ENST00000354504 ACBD7Q8N6N7 88 aa2□□□□□ -2.09
VPS54-202ENST00000354504 GDPD1Q8N9F7 314 aa2□□□□□ -2.09
VPS54-202ENST00000354504 CLEC1AQ8NC01 280 aa2□□□□□ -2.09
VPS54-202ENST00000354504 OR4D6Q8NGJ1 314 aa2□□□□□ -2.09
VPS54-202ENST00000354504 OR52E2Q8NGJ4 325 aa2□□□□□ -2.09
VPS54-202ENST00000354504 OR13C8Q8NGS7 320 aa2□□□□□ -2.09
VPS54-202ENST00000354504 OR4K13Q8NH42 304 aa2□□□□□ -2.09
VPS54-202ENST00000354504 SMIM4Q8WVI0 70 aa2□□□□□ -2.09
VPS54-202ENST00000354504 MIB2Q96AX9 1013 aa2□□□□□ -2.09
VPS54-202ENST00000354504 FBXO17Q96EF6 278 aa2□□□□□ -2.09
VPS54-202ENST00000354504 ADAT3Q96EY9 351 aaPredicted RBP2□□□□□ -2.09
VPS54-202ENST00000354504 DGAT2Q96PD7 388 aa2□□□□□ -2.09
VPS54-202ENST00000354504 FYTTD1Q96QD9 318 aaKnown RBP2□□□□□ -2.09
VPS54-202ENST00000354504 OR2M2Q96R28 347 aa2□□□□□ -2.09
VPS54-202ENST00000354504 OR6C1Q96RD1 312 aa2□□□□□ -2.09
VPS54-202ENST00000354504 NKX3-1Q99801 234 aaPredicted RBP2□□□□□ -2.09
VPS54-202ENST00000354504 POTEKPQ9BYX7 375 aa2□□□□□ -2.09
VPS54-202ENST00000354504 NOX4Q9NPH5 578 aa2□□□□□ -2.09
VPS54-202ENST00000354504 CA10Q9NS85 328 aa2□□□□□ -2.09
VPS54-202ENST00000354504 SCN3BQ9NY72 215 aa2□□□□□ -2.09
VPS54-202ENST00000354504 TRPC4Q9UBN4 977 aa2□□□□□ -2.09
VPS54-202ENST00000354504 ENOPH1Q9UHY7 261 aa2□□□□□ -2.09
VPS54-202ENST00000354504 KLK13Q9UKR3 277 aa2□□□□□ -2.09
VPS54-202ENST00000354504 TMEM5Q9Y2B1 443 aa2□□□□□ -2.09
VPS54-202ENST00000354504 SPIN1Q9Y657 262 aaPredicted RBP2□□□□□ -2.09
VPS54-202ENST00000354504 ACACAQ13085 2346 aa2□□□□□ -2.09
VPS54-202ENST00000354504 RTTNQ86VV8 2226 aa2□□□□□ -2.09
VPS54-202ENST00000354504 TMED7-TICAM2A0A0A6YYA0 188 aa2□□□□□ -2.09
VPS54-202ENST00000354504 HSPB2A8KAH6 182 aa2□□□□□ -2.09
VPS54-202ENST00000354504 ZNF587BE7ETH6 402 aa2□□□□□ -2.09
VPS54-202ENST00000354504 CLDN4O14493 209 aa2□□□□□ -2.09
VPS54-202ENST00000354504 KLK10O43240 276 aa2□□□□□ -2.09
VPS54-202ENST00000354504 HCRTR2O43614 444 aa2□□□□□ -2.09
VPS54-202ENST00000354504 ALOX12BO75342 701 aa2□□□□□ -2.09
VPS54-202ENST00000354504 CTAG2O75638 210 aa2□□□□□ -2.09
VPS54-202ENST00000354504 OR2B3O76000 313 aa2□□□□□ -2.09
VPS54-202ENST00000354504 MT-ATP6P00846 226 aa2□□□□□ -2.09
VPS54-202ENST00000354504 PSMB10P40306 273 aa2□□□□□ -2.09
VPS54-202ENST00000354504 KCNJ3P48549 501 aa2□□□□□ -2.09
VPS54-202ENST00000354504 SERPINB10P48595 397 aa2□□□□□ -2.09
VPS54-202ENST00000354504 ARRB1P49407 418 aaPredicted RBP2□□□□□ -2.09
VPS54-202ENST00000354504 SELENOPP49908 381 aa2□□□□□ -2.09
VPS54-202ENST00000354504 RORCP51449 518 aa2□□□□□ -2.09
VPS54-202ENST00000354504 POLR2HP52434 150 aaKnown RBP2□□□□□ -2.09
VPS54-202ENST00000354504 CASP6P55212 293 aa2□□□□□ -2.09
VPS54-202ENST00000354504 PRPS1P60891 318 aa2□□□□□ -2.09
VPS54-202ENST00000354504 GALK2Q01415 458 aa2□□□□□ -2.09
VPS54-202ENST00000354504 MYBPHQ13203 477 aa2□□□□□ -2.09
VPS54-202ENST00000354504 HSPB2Q16082 182 aa2□□□□□ -2.09
VPS54-202ENST00000354504 ZNF260Q3ZCT1 412 aa2□□□□□ -2.09
VPS54-202ENST00000354504 SPDYE7PQ495Y7 208 aa2□□□□□ -2.09
VPS54-202ENST00000354504 NKAIN1Q4KMZ8 207 aa2□□□□□ -2.09
VPS54-202ENST00000354504 ACSM3Q53FZ2 586 aa2□□□□□ -2.09
VPS54-202ENST00000354504 LIPNQ5VXI9 398 aa2□□□□□ -2.09
VPS54-202ENST00000354504 SHISA6Q6ZSJ9 500 aa2□□□□□ -2.09
VPS54-202ENST00000354504 ZNF550Q7Z398 422 aa2□□□□□ -2.09
VPS54-202ENST00000354504 GRINAQ7Z429 371 aa2□□□□□ -2.09
VPS54-202ENST00000354504 C1QL2Q7Z5L3 287 aa2□□□□□ -2.09
VPS54-202ENST00000354504 LHFPL1Q86WI0 220 aa2□□□□□ -2.09
VPS54-202ENST00000354504 SIAH3Q8IW03 269 aa2□□□□□ -2.09
VPS54-202ENST00000354504 C20orf196Q8IYI0 205 aa2□□□□□ -2.09
VPS54-202ENST00000354504 PRSS58Q8IYP2 241 aa2□□□□□ -2.09
VPS54-202ENST00000354504 GTPBP8Q8N3Z3 284 aaPredicted RBP2□□□□□ -2.09
VPS54-202ENST00000354504 ZNF614Q8N883 585 aa2□□□□□ -2.09
VPS54-202ENST00000354504 GATSQ8NAP1 163 aa2□□□□□ -2.09
VPS54-202ENST00000354504 ZBTB8BQ8NAP8 495 aaPredicted RBP2□□□□□ -2.09
VPS54-202ENST00000354504 PRSS33Q8NF86 280 aa2□□□□□ -2.09
VPS54-202ENST00000354504 OR51L1Q8NGJ5 315 aa2□□□□□ -2.09
VPS54-202ENST00000354504 OR2T4Q8NH00 348 aa2□□□□□ -2.09
VPS54-202ENST00000354504 GPX8Q8TED1 209 aa2□□□□□ -2.09
VPS54-202ENST00000354504 ST8SIA1Q92185 356 aa2□□□□□ -2.09
VPS54-202ENST00000354504 TMEM230Q96A57 120 aa2□□□□□ -2.09
VPS54-202ENST00000354504 RERGQ96A58 199 aaPredicted RBP2□□□□□ -2.09
VPS54-202ENST00000354504 SGTBQ96EQ0 304 aa2□□□□□ -2.09
VPS54-202ENST00000354504 LOXL4Q96JB6 756 aa2□□□□□ -2.09
VPS54-202ENST00000354504 SIGLEC12Q96PQ1 595 aa2□□□□□ -2.09
VPS54-202ENST00000354504 WACQ9BTA9 647 aa2□□□□□ -2.09
VPS54-202ENST00000354504 TMED9Q9BVK6 235 aa2□□□□□ -2.09
VPS54-202ENST00000354504 B3GNT4Q9C0J1 378 aa2□□□□□ -2.09
VPS54-202ENST00000354504 OR2B2Q9GZK3 357 aa2□□□□□ -2.09
VPS54-202ENST00000354504 MYOZ1Q9NP98 299 aaPredicted RBP2□□□□□ -2.09
VPS54-202ENST00000354504 KLHL1Q9NR64 748 aa2□□□□□ -2.09
VPS54-202ENST00000354504 SNTG1Q9NSN8 517 aa2□□□□□ -2.09
VPS54-202ENST00000354504 RBFOX1Q9NWB1 397 aaKnown RBP2□□□□□ -2.09
VPS54-202ENST00000354504 KLHL28Q9NXS3 571 aa2□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms