RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 ZNF816-ZNF321PA0A0X1KG74 233 aa13.36□□□□□ -0.27
COL17A1-201ENST00000353479 ZNF468Q5VIY5 522 aaPredicted RBP13.36□□□□□ -0.27
COL17A1-201ENST00000353479 THSD4Q6ZMP0 1018 aa13.36□□□□□ -0.27
COL17A1-201ENST00000353479 ZNF486Q96H40 463 aaPredicted RBP13.36□□□□□ -0.27
COL17A1-201ENST00000353479 MEIKINA0A087WXM9 373 aa13.36□□□□□ -0.27
COL17A1-201ENST00000353479 FAM90A27PA6NNH2 459 aa13.36□□□□□ -0.27
COL17A1-201ENST00000353479 RAB27BO00194 218 aa13.36□□□□□ -0.27
COL17A1-201ENST00000353479 CDC42EP2O14613 210 aa13.36□□□□□ -0.27
COL17A1-201ENST00000353479 GLAP06280 429 aa13.36□□□□□ -0.27
COL17A1-201ENST00000353479 ZNF83P51522 516 aa13.36□□□□□ -0.27
COL17A1-201ENST00000353479 SRPXP78539 464 aa13.36□□□□□ -0.27
COL17A1-201ENST00000353479 DGCR2P98153 550 aa13.36□□□□□ -0.27
COL17A1-201ENST00000353479 LYSMD2Q8IV50 215 aa13.36□□□□□ -0.27
COL17A1-201ENST00000353479 SLC35B4Q969S0 331 aa13.36□□□□□ -0.27
COL17A1-201ENST00000353479 OR2M5A3KFT3 312 aa13.36□□□□□ -0.27
COL17A1-201ENST00000353479 K7EPK0 472 aa13.36□□□□□ -0.27
COL17A1-201ENST00000353479 GNB3P16520 340 aa13.36□□□□□ -0.27
COL17A1-201ENST00000353479 SHEQ5VZ18 495 aa13.36□□□□□ -0.27
COL17A1-201ENST00000353479 MRGPREQ86SM8 312 aa13.36□□□□□ -0.27
COL17A1-201ENST00000353479 FAM71E2Q8N5Q1 922 aa13.36□□□□□ -0.27
COL17A1-201ENST00000353479 FBXO17Q96EF6 278 aa13.36□□□□□ -0.27
COL17A1-201ENST00000353479 LOXL4Q96JB6 756 aa13.36□□□□□ -0.27
COL17A1-201ENST00000353479 MSTNO14793 375 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 CDKN2AP42771 156 aaKnown RBP13.35□□□□□ -0.27
COL17A1-201ENST00000353479 MAGEA5P43359 124 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 MC2RQ01718 297 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 RAB35Q15286 201 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 ESCO2Q56NI9 601 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 C1orf87Q8N0U7 546 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 OR51H1Q8NH63 302 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 TMEM100Q9NV29 134 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 CCL3P10147 92 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 S100PP25815 95 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 CASP3P42574 277 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 HMGA2P52926 109 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 COMMD7Q86VX2 200 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 YIPF6Q96EC8 236 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 ZNF649Q9BS31 505 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 POFUT1Q9H488 388 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 FBXL2Q9UKC9 423 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 FBXO7Q9Y3I1 522 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 TRPM7Q96QT4 1865 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 B8ZZF3 427 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 ARPC3O15145 178 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 SPRY1O43609 319 aaPredicted RBP13.35□□□□□ -0.27
COL17A1-201ENST00000353479 ALOX5APP20292 161 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 OPRM1P35372 400 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 ETV6P41212 452 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 C3AR1Q16581 482 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 ZNF767PQ75MW2 155 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 CMTM4Q8IZR5 234 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 FAM185AQ8N0U4 392 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 WDR54Q9H977 334 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 A0A1W2PQD3 144 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 CLDN1O95832 211 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 C1QL3Q5VWW1 255 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 C9orf40Q8IXQ3 194 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 SLC38A9Q8NBW4 561 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 MAFIPQ8WZ33 124 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 SEC22CQ9BRL7 303 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 C12orf10Q9HB07 376 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 FLRT3Q9NZU0 649 aa13.35□□□□□ -0.27
COL17A1-201ENST00000353479 A0A1W2PPV4 95 aa13.34□□□□□ -0.27
COL17A1-201ENST00000353479 EIF4EP06730 217 aaKnown RBP13.34□□□□□ -0.27
COL17A1-201ENST00000353479 LTBRP36941 435 aa13.34□□□□□ -0.27
COL17A1-201ENST00000353479 GPM6AP51674 278 aa13.34□□□□□ -0.27
COL17A1-201ENST00000353479 ARL11Q969Q4 196 aa13.34□□□□□ -0.27
COL17A1-201ENST00000353479 SLAMF9Q96A28 289 aa13.34□□□□□ -0.27
COL17A1-201ENST00000353479 SLC25A21Q9BQT8 299 aaPredicted RBP13.34□□□□□ -0.27
COL17A1-201ENST00000353479 SPRY3O43610 288 aa13.34□□□□□ -0.27
COL17A1-201ENST00000353479 LYZL6O75951 148 aa13.34□□□□□ -0.27
COL17A1-201ENST00000353479 IFNA10P01566 189 aa13.34□□□□□ -0.27
COL17A1-201ENST00000353479 CD82P27701 267 aa13.34□□□□□ -0.27
COL17A1-201ENST00000353479 DCAF10Q5QP82 559 aa13.34□□□□□ -0.27
COL17A1-201ENST00000353479 NUDCD2Q8WVJ2 157 aa13.34□□□□□ -0.27
COL17A1-201ENST00000353479 TCTEX1D2Q8WW35 142 aa13.34□□□□□ -0.27
COL17A1-201ENST00000353479 ITPKCQ96DU7 683 aa13.34□□□□□ -0.27
COL17A1-201ENST00000353479 ECI1P42126 302 aa13.34□□□□□ -0.27
COL17A1-201ENST00000353479 ZNF92Q03936 586 aa13.34□□□□□ -0.27
COL17A1-201ENST00000353479 GAB4Q2WGN9 574 aa13.34□□□□□ -0.27
COL17A1-201ENST00000353479 ZNF774Q6NX45 483 aa13.34□□□□□ -0.27
COL17A1-201ENST00000353479 SUMF1Q8NBK3 374 aa13.34□□□□□ -0.27
COL17A1-201ENST00000353479 SCPEP1Q9HB40 452 aa13.34□□□□□ -0.27
COL17A1-201ENST00000353479 DTX4Q9Y2E6 619 aa13.34□□□□□ -0.27
COL17A1-201ENST00000353479 NTN1O95631 604 aa13.34□□□□□ -0.27
COL17A1-201ENST00000353479 FTH1P19P0C7X4 201 aa13.34□□□□□ -0.27
COL17A1-201ENST00000353479 PTBP1P26599 531 aaKnown RBP eCLIP13.34□□□□□ -0.27
COL17A1-201ENST00000353479 PDLIM3Q53GG5 364 aaPredicted RBP13.34□□□□□ -0.27
COL17A1-201ENST00000353479 OR52W1Q6IF63 320 aa13.34□□□□□ -0.27
COL17A1-201ENST00000353479 NCCRP1Q6ZVX7 275 aaPredicted RBP13.34□□□□□ -0.27
COL17A1-201ENST00000353479 OR4D11Q8NGI4 311 aa13.34□□□□□ -0.27
COL17A1-201ENST00000353479 NPIPB8E9PQR5 432 aa13.34□□□□□ -0.27
COL17A1-201ENST00000353479 FBXO24O75426 580 aa13.34□□□□□ -0.27
COL17A1-201ENST00000353479 CT45A8P0DMV1 189 aa13.34□□□□□ -0.27
COL17A1-201ENST00000353479 CT45A9P0DMV2 189 aa13.34□□□□□ -0.27
COL17A1-201ENST00000353479 CT45A2Q5DJT8 189 aa13.34□□□□□ -0.27
COL17A1-201ENST00000353479 SAP25Q8TEE9 199 aa13.34□□□□□ -0.27
COL17A1-201ENST00000353479 ST3GAL6Q9Y274 331 aa13.34□□□□□ -0.27
COL17A1-201ENST00000353479 ZNF32P17041 273 aa13.33□□□□□ -0.27
COL17A1-201ENST00000353479 ANXA7P20073 488 aaKnown RBP13.33□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms