RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 SLC35A1P78382 337 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 SORDQ00796 357 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 OPCMLQ14982 345 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 SLC25A53Q5H9E4 307 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 DEGS2Q6QHC5 323 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 DNM1P46Q6ZS02 220 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 FADS6Q8N9I5 356 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 OR2AK2Q8NG84 335 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 OR6X1Q8NH79 312 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 RNF138Q8WVD3 245 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 PGAM5Q96HS1 289 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 ELL3Q9HB65 397 aaPredicted RBP9.14□□□□□ -0.95
LIMA1-201ENST00000341247 PROK2Q9HC23 129 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 NPTNQ9Y639 398 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 MGAQ8IWI9 3026 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 TCN2P20062 427 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 WDR5BQ86VZ2 330 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 DTX1Q86Y01 620 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 SLC22A24Q8N4F4 322 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 TMEM105Q8N8V8 129 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 RHBDD1Q8TEB9 315 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 CASTOR1Q8WTX7 329 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 SEC22AQ96IW7 307 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 SFXN2Q96NB2 322 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 TRAF4Q9BUZ4 470 aaPredicted RBP9.14□□□□□ -0.95
LIMA1-201ENST00000341247 GLTPQ9NZD2 209 aa9.14□□□□□ -0.95
LIMA1-201ENST00000341247 A0A0J9YW62 118 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 LEUTXA8MZ59 168 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 TLX3O43711 291 aaPredicted RBP9.13□□□□□ -0.95
LIMA1-201ENST00000341247 ZIC3O60481 467 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 PLATP00750 562 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 PMP2P02689 132 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 IL5P05113 134 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 OR4E1P0C645 316 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 EIF1P41567 113 aaKnown RBP9.13□□□□□ -0.95
LIMA1-201ENST00000341247 ATXN7L3Q14CW9 347 aaPredicted RBP9.13□□□□□ -0.95
LIMA1-201ENST00000341247 C1orf210Q8IVY1 113 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 NKAIN3Q8N8D7 197 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 OR2Y1Q8NGV0 311 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 MAFIPQ8WZ33 124 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 IFT46Q9NQC8 304 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 HDGFL3Q9Y3E1 203 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 IGLV3-32A0A0A0MS00 114 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 F5H5P2 479 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 ETV2O00321 342 aaPredicted RBP9.13□□□□□ -0.95
LIMA1-201ENST00000341247 LDLRAD4O15165 306 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 SOCS1O15524 211 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 HRH1P35367 487 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 DLX5P56178 289 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 RNASE10Q5GAN6 216 aaKnown RBP9.13□□□□□ -0.95
LIMA1-201ENST00000341247 C1orf100Q5SVJ3 147 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 ALKAL2Q6UX46 152 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 ROBO4Q8WZ75 1007 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 ARL6Q9H0F7 186 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 SLC17A5Q9NRA2 495 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 PISDQ9UG56 409 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 NXT1Q9UKK6 140 aaKnown RBP9.13□□□□□ -0.95
LIMA1-201ENST00000341247 RAB22AQ9UL26 194 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 MRPS28Q9Y2Q9 187 aaKnown RBP9.13□□□□□ -0.95
LIMA1-201ENST00000341247 C19orf67A6NJJ6 358 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 SNRPGP15A8MWD9 76 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 CRTAPO75718 401 aaPredicted RBP9.13□□□□□ -0.95
LIMA1-201ENST00000341247 STK17BO94768 372 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 CER1O95813 267 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 GIPP09681 153 aaPredicted RBP9.13□□□□□ -0.95
LIMA1-201ENST00000341247 LIFP15018 202 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 NFYAP23511 347 aaPredicted RBP9.13□□□□□ -0.95
LIMA1-201ENST00000341247 SEZ6L2Q6UXD5 910 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 GTPBP8Q8N3Z3 284 aaPredicted RBP9.13□□□□□ -0.95
LIMA1-201ENST00000341247 SPICQ8N5J4 248 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 OR14L1PQ8NHC6 308 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 SLC25A43Q8WUT9 341 aaPredicted RBP9.13□□□□□ -0.95
LIMA1-201ENST00000341247 SRXN1Q9BYN0 137 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 WDR54Q9H977 334 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 EMC3Q9P0I2 261 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 OPN4Q9UHM6 478 aa9.13□□□□□ -0.95
LIMA1-201ENST00000341247 NOP16Q9Y3C1 178 aaKnown RBP9.13□□□□□ -0.95
LIMA1-201ENST00000341247 NPIPB13A6NJU9 1138 aa9.12□□□□□ -0.95
LIMA1-201ENST00000341247 NPIPB4C9JG80 1138 aa9.12□□□□□ -0.95
LIMA1-201ENST00000341247 NTN3O00634 580 aaPredicted RBP9.12□□□□□ -0.95
LIMA1-201ENST00000341247 IGHV3-9P01782 118 aa9.12□□□□□ -0.95
LIMA1-201ENST00000341247 RFPL3SP0C7P2 107 aa9.12□□□□□ -0.95
LIMA1-201ENST00000341247 CPN1P15169 458 aa9.12□□□□□ -0.95
LIMA1-201ENST00000341247 FAHP16930 419 aa9.12□□□□□ -0.95
LIMA1-201ENST00000341247 ZNF24P17028 368 aa9.12□□□□□ -0.95
LIMA1-201ENST00000341247 AKR1C4P17516 323 aa9.12□□□□□ -0.95
LIMA1-201ENST00000341247 VAMP1P23763 118 aa9.12□□□□□ -0.95
LIMA1-201ENST00000341247 RAP2BP61225 183 aa9.12□□□□□ -0.95
LIMA1-201ENST00000341247 ZNF260Q3ZCT1 412 aa9.12□□□□□ -0.95
LIMA1-201ENST00000341247 ATPAF1Q5TC12 328 aaPredicted RBP9.12□□□□□ -0.95
LIMA1-201ENST00000341247 RHOUQ7L0Q8 258 aa9.12□□□□□ -0.95
LIMA1-201ENST00000341247 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.12□□□□□ -0.95
LIMA1-201ENST00000341247 PIGTQ969N2 578 aa9.12□□□□□ -0.95
LIMA1-201ENST00000341247 PNRC2Q9NPJ4 139 aaKnown RBP9.12□□□□□ -0.95
LIMA1-201ENST00000341247 PLEK2Q9NYT0 353 aa9.12□□□□□ -0.95
LIMA1-201ENST00000341247 COQ3Q9NZJ6 369 aa9.12□□□□□ -0.95
LIMA1-201ENST00000341247 LOC102723996A0A087X1L8 192 aa9.12□□□□□ -0.95
LIMA1-201ENST00000341247 I3L521 148 aa9.12□□□□□ -0.95
LIMA1-201ENST00000341247 IFNA7P01567 189 aa9.12□□□□□ -0.95
LIMA1-201ENST00000341247 ZFP36L1Q07352 338 aaKnown RBP9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms