RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 CLRN3Q8NCR9 226 aa3□□□□□ -1.93
CSMD3-202ENST00000339701 LILRB1Q8NHL6 650 aaPredicted RBP3□□□□□ -1.93
CSMD3-202ENST00000339701 KISS1RQ969F8 398 aaPredicted RBP3□□□□□ -1.93
CSMD3-202ENST00000339701 BPIFA2Q96DR5 249 aa3□□□□□ -1.93
CSMD3-202ENST00000339701 OR10C1Q96KK4 312 aa3□□□□□ -1.93
CSMD3-202ENST00000339701 NRSN2Q9GZP1 204 aa3□□□□□ -1.93
CSMD3-202ENST00000339701 TMEM191AQ9H0A3 160 aa3□□□□□ -1.93
CSMD3-202ENST00000339701 POFUT1Q9H488 388 aa3□□□□□ -1.93
CSMD3-202ENST00000339701 CHODLQ9H9P2 273 aa3□□□□□ -1.93
CSMD3-202ENST00000339701 TMEM167BQ9NRX6 74 aa3□□□□□ -1.93
CSMD3-202ENST00000339701 CBLCQ9ULV8 474 aa3□□□□□ -1.93
CSMD3-202ENST00000339701 VWA8A3KMH1 1905 aa3□□□□□ -1.93
CSMD3-202ENST00000339701 DOPEY1Q5JWR5 2465 aa3□□□□□ -1.93
CSMD3-202ENST00000339701 A0A1B0GX78 115 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 ZNF840PA6NDX5 716 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 OR2T8A6NH00 312 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 SGK494L7N484 410 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 GPANK1O95872 356 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 SFTPBP07988 381 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 NPBWR2P48146 333 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 GPM6AP51674 278 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 SELENOTP62341 195 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 SQSTM1Q13501 440 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 UEVLDQ8IX04 471 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 BOD1L2Q8IYS8 172 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 TSEN2Q8NCE0 465 aaKnown RBP2.99□□□□□ -1.93
CSMD3-202ENST00000339701 PXT1Q8NFP0 134 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 OR1S2Q8NGQ3 325 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 OR5B3Q8NH48 314 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 TMEM163Q8TC26 289 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 MRPL13Q9BYD1 178 aaKnown RBP2.99□□□□□ -1.93
CSMD3-202ENST00000339701 FGF21Q9NSA1 209 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 NECAP2Q9NVZ3 263 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 CNIH4Q9P003 139 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 IL19Q9UHD0 177 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 SLC45A2Q9UMX9 530 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 SNX11Q9Y5W9 270 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 ALPK3Q96L96 1907 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 TRBV23-1A0A0A0MS06 115 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 TRAV1-2A0A0B4J238 106 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 TARM1B6A8C7 271 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 TRAPPC2LH3BP13 241 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 GEMIN2O14893 280 aaKnown RBP2.99□□□□□ -1.93
CSMD3-202ENST00000339701 HOXC4P09017 264 aaPredicted RBP2.99□□□□□ -1.93
CSMD3-202ENST00000339701 FPR3P25089 353 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 RPS24P62847 133 aaKnown RBP2.99□□□□□ -1.93
CSMD3-202ENST00000339701 CD226Q15762 336 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 ZNF684Q5T5D7 378 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 RNLSQ5VYX0 342 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 IL20RBQ6UXL0 311 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 CPEB2Q7Z5Q1 589 aaKnown RBP2.99□□□□□ -1.93
CSMD3-202ENST00000339701 RTN4RL1Q86UN2 441 aaPredicted RBP2.99□□□□□ -1.93
CSMD3-202ENST00000339701 BAGE3Q86Y29 109 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 BAGE2Q86Y30 109 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 OR8G5Q8NG78 346 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 OR9I1Q8NGQ6 314 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 OVOL2Q9BRP0 275 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 ALX4Q9H161 411 aaPredicted RBP2.99□□□□□ -1.93
CSMD3-202ENST00000339701 ZNF230Q9UIE0 474 aaPredicted RBP2.99□□□□□ -1.93
CSMD3-202ENST00000339701 HSPB8Q9UJY1 196 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 NOCTQ9UK39 431 aaKnown RBP2.99□□□□□ -1.93
CSMD3-202ENST00000339701 ZNF256Q9Y2P7 627 aaPredicted RBP2.99□□□□□ -1.93
CSMD3-202ENST00000339701 NOSIPQ9Y314 301 aaKnown RBP2.99□□□□□ -1.93
CSMD3-202ENST00000339701 SOX21Q9Y651 276 aaPredicted RBP2.99□□□□□ -1.93
CSMD3-202ENST00000339701 CFAP20Q9Y6A4 193 aaKnown RBP2.99□□□□□ -1.93
CSMD3-202ENST00000339701 FAM183AA6NL82 134 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 TNFRSF10CO14798 259 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 PDGFAP04085 211 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 RRASP10301 218 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 RPS16P62249 146 aaKnown RBP2.99□□□□□ -1.93
CSMD3-202ENST00000339701 RPL7AP62424 266 aaKnown RBP2.99□□□□□ -1.93
CSMD3-202ENST00000339701 BSXQ3C1V8 233 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 ZNF791Q3KP31 576 aaPredicted RBP2.99□□□□□ -1.93
CSMD3-202ENST00000339701 TMEM128Q5BJH2 165 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 IGSF11Q5DX21 431 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 CLLU1Q5K131 121 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 DMRTA1Q5VZB9 504 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 Q6AWC8 147 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 PRR27Q6MZM9 219 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 GLIS1Q8NBF1 620 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 OR4S1Q8NGB4 309 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 FGFBP2Q9BYJ0 223 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 AKTIPQ9H8T0 292 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 OBP2BQ9NPH6 170 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 ZNF629Q9UEG4 869 aaPredicted RBP2.99□□□□□ -1.93
CSMD3-202ENST00000339701 NAT8Q9UHE5 227 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 ANXA10Q9UJ72 324 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 TANC2Q9HCD6 1990 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 PLXNB3Q9ULL4 1909 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 MBLAC1A4D2B0 266 aaPredicted RBP2.99□□□□□ -1.93
CSMD3-202ENST00000339701 C9orf172C9J069 976 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 TOX3O15405 576 aaPredicted RBP2.99□□□□□ -1.93
CSMD3-202ENST00000339701 PYCR1P32322 319 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 EMX1Q04741 257 aaPredicted RBP2.99□□□□□ -1.93
CSMD3-202ENST00000339701 CIRBPQ14011 172 aaKnown RBP2.99□□□□□ -1.93
CSMD3-202ENST00000339701 GRB7Q14451 532 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 RAB6CQ53S08 254 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 TFAP2EQ6VUC0 442 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 CEACAM19Q7Z692 300 aa2.99□□□□□ -1.93
CSMD3-202ENST00000339701 MRGPRGQ86SM5 289 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms