RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 N6AMT1Q9Y5N5 214 aa13.73□□□□□ -0.21
LSM1-201ENST00000311351 A0A1B0GWJ7 208 aa13.72□□□□□ -0.21
LSM1-201ENST00000311351 PRR23D1E9PI22 279 aaPredicted RBP13.72□□□□□ -0.21
LSM1-201ENST00000311351 TMEM178BH3BS89 294 aa13.72□□□□□ -0.21
LSM1-201ENST00000311351 GLCEO94923 617 aa13.72□□□□□ -0.21
LSM1-201ENST00000311351 ZNF205O95201 554 aa13.72□□□□□ -0.21
LSM1-201ENST00000311351 CYB5R3P00387 301 aaPredicted RBP13.72□□□□□ -0.21
LSM1-201ENST00000311351 AVPP01185 164 aa13.72□□□□□ -0.21
LSM1-201ENST00000311351 PRR23D2P0DMB1 279 aaPredicted RBP13.72□□□□□ -0.21
LSM1-201ENST00000311351 ANPEPP15144 967 aa13.72□□□□□ -0.21
LSM1-201ENST00000311351 PAICSP22234 425 aaKnown RBP13.72□□□□□ -0.21
LSM1-201ENST00000311351 GSTT1P30711 240 aa13.72□□□□□ -0.21
LSM1-201ENST00000311351 SRP9P49458 86 aaKnown RBP13.72□□□□□ -0.21
LSM1-201ENST00000311351 BLVRAP53004 296 aa13.72□□□□□ -0.21
LSM1-201ENST00000311351 SEC61A1P61619 476 aaKnown RBP13.72□□□□□ -0.21
LSM1-201ENST00000311351 TMEM236Q5W0B7 351 aa13.72□□□□□ -0.21
LSM1-201ENST00000311351 SHQ1Q6PI26 577 aaKnown RBP13.72□□□□□ -0.21
LSM1-201ENST00000311351 C1orf229Q6ZS94 237 aaPredicted RBP13.72□□□□□ -0.21
LSM1-201ENST00000311351 BBS1Q8NFJ9 593 aa13.72□□□□□ -0.21
LSM1-201ENST00000311351 SPRYD4Q8WW59 207 aaPredicted RBP13.72□□□□□ -0.21
LSM1-201ENST00000311351 DVL3Q92997 716 aaPredicted RBP13.72□□□□□ -0.21
LSM1-201ENST00000311351 KCNJ15Q99712 375 aa13.72□□□□□ -0.21
LSM1-201ENST00000311351 ABHD6Q9BV23 337 aa13.72□□□□□ -0.21
LSM1-201ENST00000311351 MMADHCQ9H3L0 296 aaPredicted RBP13.72□□□□□ -0.21
LSM1-201ENST00000311351 METTL17Q9H7H0 456 aaPredicted RBP13.72□□□□□ -0.21
LSM1-201ENST00000311351 KIF17Q9P2E2 1029 aa13.72□□□□□ -0.21
LSM1-201ENST00000311351 LOC105371242A0A075B767 164 aa13.71□□□□□ -0.21
LSM1-201ENST00000311351 CD300LBA8K4G0 201 aa13.71□□□□□ -0.21
LSM1-201ENST00000311351 SELENOFO60613 162 aa13.71□□□□□ -0.21
LSM1-201ENST00000311351 ANXA8P13928 327 aa13.71□□□□□ -0.21
LSM1-201ENST00000311351 ZFP36P26651 326 aaKnown RBP13.71□□□□□ -0.21
LSM1-201ENST00000311351 THBS2P35442 1172 aa13.71□□□□□ -0.21
LSM1-201ENST00000311351 CX3CR1P49238 355 aa13.71□□□□□ -0.21
LSM1-201ENST00000311351 CDK5Q00535 292 aa13.71□□□□□ -0.21
LSM1-201ENST00000311351 FAM201AQ5SY85 155 aa13.71□□□□□ -0.21
LSM1-201ENST00000311351 PRAMEF6Q5VXH4 476 aa13.71□□□□□ -0.21
LSM1-201ENST00000311351 TIGD4Q8IY51 512 aa13.71□□□□□ -0.21
LSM1-201ENST00000311351 SPICQ8N5J4 248 aa13.71□□□□□ -0.21
LSM1-201ENST00000311351 TMEM158Q8WZ71 300 aa13.71□□□□□ -0.21
LSM1-201ENST00000311351 UTP4Q969X6 686 aaKnown RBP13.71□□□□□ -0.21
LSM1-201ENST00000311351 TMPRSS13Q9BYE2 586 aa13.71□□□□□ -0.21
LSM1-201ENST00000311351 MARCH7Q9H992 704 aa13.71□□□□□ -0.21
LSM1-201ENST00000311351 SLC25A19Q9HC21 320 aa13.71□□□□□ -0.21
LSM1-201ENST00000311351 DNAJC27Q9NZQ0 273 aa13.71□□□□□ -0.21
LSM1-201ENST00000311351 PCDHB10Q9UN67 800 aa13.71□□□□□ -0.21
LSM1-201ENST00000311351 A0A0G2JMP0 313 aa13.7□□□□□ -0.22
LSM1-201ENST00000311351 A0A0X1KG70 313 aa13.7□□□□□ -0.22
LSM1-201ENST00000311351 GGT3PA6NGU5 568 aa13.7□□□□□ -0.22
LSM1-201ENST00000311351 CA6P23280 308 aa13.7□□□□□ -0.22
LSM1-201ENST00000311351 HSD11B1P28845 292 aa13.7□□□□□ -0.22
LSM1-201ENST00000311351 PMELP40967 661 aa13.7□□□□□ -0.22
LSM1-201ENST00000311351 NAA10P41227 235 aaPredicted RBP13.7□□□□□ -0.22
LSM1-201ENST00000311351 MAB21L1Q13394 359 aa13.7□□□□□ -0.22
LSM1-201ENST00000311351 TMEM155Q4W5P6 130 aa13.7□□□□□ -0.22
LSM1-201ENST00000311351 KLHL12Q53G59 568 aa13.7□□□□□ -0.22
LSM1-201ENST00000311351 DCAF12L2Q5VW00 463 aa13.7□□□□□ -0.22
LSM1-201ENST00000311351 LRRC28Q86X40 367 aaPredicted RBP13.7□□□□□ -0.22
LSM1-201ENST00000311351 CPOQ8IVL8 374 aa13.7□□□□□ -0.22
LSM1-201ENST00000311351 OR4M2Q8NGB6 313 aa13.7□□□□□ -0.22
LSM1-201ENST00000311351 OR56B2PQ8NGI1 322 aa13.7□□□□□ -0.22
LSM1-201ENST00000311351 RNF133Q8WVZ7 376 aa13.7□□□□□ -0.22
LSM1-201ENST00000311351 ADAT1Q9BUB4 502 aaKnown RBP13.7□□□□□ -0.22
LSM1-201ENST00000311351 REPIN1Q9BWE0 567 aaKnown RBP13.7□□□□□ -0.22
LSM1-201ENST00000311351 PATZ1Q9HBE1 687 aaKnown RBP13.7□□□□□ -0.22
LSM1-201ENST00000311351 PAPOLBQ9NRJ5 636 aaKnown RBP13.7□□□□□ -0.22
LSM1-201ENST00000311351 KLHDC2Q9Y2U9 406 aa13.7□□□□□ -0.22
LSM1-201ENST00000311351 CEACAM18A8MTB9 384 aa13.69□□□□□ -0.22
LSM1-201ENST00000311351 F5H0A9 414 aaPredicted RBP13.69□□□□□ -0.22
LSM1-201ENST00000311351 TBX1O43435 398 aa13.69□□□□□ -0.22
LSM1-201ENST00000311351 HMGN1P05114 100 aa13.69□□□□□ -0.22
LSM1-201ENST00000311351 ANXA2P07355 339 aaKnown RBP13.69□□□□□ -0.22
LSM1-201ENST00000311351 ADRA2CP18825 462 aa13.69□□□□□ -0.22
LSM1-201ENST00000311351 MDH2P40926 338 aaKnown RBP13.69□□□□□ -0.22
LSM1-201ENST00000311351 CD200P41217 278 aa13.69□□□□□ -0.22
LSM1-201ENST00000311351 DAPP51397 102 aa13.69□□□□□ -0.22
LSM1-201ENST00000311351 GRB2P62993 217 aaKnown RBP13.69□□□□□ -0.22
LSM1-201ENST00000311351 HOXA4Q00056 320 aaPredicted RBP13.69□□□□□ -0.22
LSM1-201ENST00000311351 OR8G1Q15617 311 aa13.69□□□□□ -0.22
LSM1-201ENST00000311351 FAHD1Q6P587 224 aa13.69□□□□□ -0.22
LSM1-201ENST00000311351 KLHL36Q8N4N3 616 aa13.69□□□□□ -0.22
LSM1-201ENST00000311351 SPATA3Q8NHX4 192 aa13.69□□□□□ -0.22
LSM1-201ENST00000311351 PLEKHA8Q96JA3 519 aa13.69□□□□□ -0.22
LSM1-201ENST00000311351 BRD7Q9NPI1 651 aa13.69□□□□□ -0.22
LSM1-201ENST00000311351 UFSP2Q9NUQ7 469 aa13.69□□□□□ -0.22
LSM1-201ENST00000311351 IFNL4K9M1U5 179 aa13.68□□□□□ -0.22
LSM1-201ENST00000311351 M0R129 80 aa13.68□□□□□ -0.22
LSM1-201ENST00000311351 PRODHO43272 600 aa13.68□□□□□ -0.22
LSM1-201ENST00000311351 MITFO75030 526 aaPredicted RBP13.68□□□□□ -0.22
LSM1-201ENST00000311351 FAM20BO75063 409 aa13.68□□□□□ -0.22
LSM1-201ENST00000311351 FOXH1O75593 365 aa13.68□□□□□ -0.22
LSM1-201ENST00000311351 RGS9O75916 674 aaPredicted RBP13.68□□□□□ -0.22
LSM1-201ENST00000311351 SLC2A5P22732 501 aa13.68□□□□□ -0.22
LSM1-201ENST00000311351 OPRL1P41146 370 aa13.68□□□□□ -0.22
LSM1-201ENST00000311351 GATA4P43694 442 aa13.68□□□□□ -0.22
LSM1-201ENST00000311351 SLC15A1P46059 708 aa13.68□□□□□ -0.22
LSM1-201ENST00000311351 RAD23AP54725 363 aa13.68□□□□□ -0.22
LSM1-201ENST00000311351 ZNF121P58317 390 aaPredicted RBP13.68□□□□□ -0.22
LSM1-201ENST00000311351 RPS7P62081 194 aaKnown RBP13.68□□□□□ -0.22
LSM1-201ENST00000311351 MPPED2Q15777 294 aa13.68□□□□□ -0.22
LSM1-201ENST00000311351 ATP6AP1Q15904 470 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms