RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 METTL12A8MUP2 240 aa13.86□□□□□ -0.19
SHH-201ENST00000297261 BRINP1O60477 761 aa13.86□□□□□ -0.19
SHH-201ENST00000297261 CTSVO60911 334 aa13.86□□□□□ -0.19
SHH-201ENST00000297261 IGHG1P01857 330 aa13.86□□□□□ -0.19
SHH-201ENST00000297261 HPNP05981 417 aa13.86□□□□□ -0.19
SHH-201ENST00000297261 DAOP14920 347 aa13.86□□□□□ -0.19
SHH-201ENST00000297261 IKZF1Q13422 519 aa13.86□□□□□ -0.19
SHH-201ENST00000297261 RUNX2Q13950 521 aa13.86□□□□□ -0.19
SHH-201ENST00000297261 CLEC1AQ8NC01 280 aa13.86□□□□□ -0.19
SHH-201ENST00000297261 WWTR1Q9GZV5 400 aa13.86□□□□□ -0.19
SHH-201ENST00000297261 KCNK15Q9H427 330 aa13.86□□□□□ -0.19
SHH-201ENST00000297261 ZNF286AQ9HBT8 521 aa13.86□□□□□ -0.19
SHH-201ENST00000297261 FBXO34Q9NWN3 711 aa13.86□□□□□ -0.19
SHH-201ENST00000297261 SCN3AQ9NY46 2000 aa13.86□□□□□ -0.19
SHH-201ENST00000297261 MED19A0JLT2 244 aaPredicted RBP13.86□□□□□ -0.19
SHH-201ENST00000297261 RPA2P15927 270 aa13.86□□□□□ -0.19
SHH-201ENST00000297261 AGFG1P52594 562 aaKnown RBP13.86□□□□□ -0.19
SHH-201ENST00000297261 EFNA3P52797 238 aa13.86□□□□□ -0.19
SHH-201ENST00000297261 PLP2Q04941 152 aa13.86□□□□□ -0.19
SHH-201ENST00000297261 KLF9Q13886 244 aaPredicted RBP13.86□□□□□ -0.19
SHH-201ENST00000297261 LRRC18Q8N456 261 aa13.86□□□□□ -0.19
SHH-201ENST00000297261 ARIH2OSQ8N7S6 290 aa13.86□□□□□ -0.19
SHH-201ENST00000297261 LYRM4Q9HD34 91 aa13.86□□□□□ -0.19
SHH-201ENST00000297261 ZFP64Q9NPA5 681 aa13.86□□□□□ -0.19
SHH-201ENST00000297261 ANKRD36A6QL64 1941 aa13.85□□□□□ -0.19
SHH-201ENST00000297261 OR6C68A6NDL8 312 aa13.85□□□□□ -0.19
SHH-201ENST00000297261 CYB5BO43169 146 aa13.85□□□□□ -0.19
SHH-201ENST00000297261 SLC17A1Q14916 467 aa13.85□□□□□ -0.19
SHH-201ENST00000297261 ZNF595Q8IYB9 648 aa13.85□□□□□ -0.19
SHH-201ENST00000297261 RCBTB1Q8NDN9 531 aa13.85□□□□□ -0.19
SHH-201ENST00000297261 LFNGQ8NES3 379 aa13.85□□□□□ -0.19
SHH-201ENST00000297261 MR1Q95460 341 aa13.85□□□□□ -0.19
SHH-201ENST00000297261 CMBLQ96DG6 245 aa13.85□□□□□ -0.19
SHH-201ENST00000297261 LIN37Q96GY3 246 aaPredicted RBP13.85□□□□□ -0.19
SHH-201ENST00000297261 OR2W5A6NFC9 320 aa13.85□□□□□ -0.19
SHH-201ENST00000297261 NPIPB8E9PQR5 432 aa13.85□□□□□ -0.19
SHH-201ENST00000297261 IGHA1P01876 353 aa13.85□□□□□ -0.19
SHH-201ENST00000297261 OPRM1P35372 400 aa13.85□□□□□ -0.19
SHH-201ENST00000297261 CSNK1A1P48729 337 aa13.85□□□□□ -0.19
SHH-201ENST00000297261 RPL27P61353 136 aaKnown RBP13.85□□□□□ -0.19
SHH-201ENST00000297261 SPEM1Q8N4L4 309 aa13.85□□□□□ -0.19
SHH-201ENST00000297261 OR4N2Q8NGD1 307 aa13.85□□□□□ -0.19
SHH-201ENST00000297261 KCNJ15Q99712 375 aa13.85□□□□□ -0.19
SHH-201ENST00000297261 PRO1933Q9H354 126 aa13.85□□□□□ -0.19
SHH-201ENST00000297261 UQCC1Q9NVA1 299 aa13.85□□□□□ -0.19
SHH-201ENST00000297261 WASF3Q9UPY6 502 aa13.85□□□□□ -0.19
SHH-201ENST00000297261 PCDHGA5Q9Y5G8 931 aa13.85□□□□□ -0.19
SHH-201ENST00000297261 CEBPZOSA8MTT3 80 aa13.85□□□□□ -0.19
SHH-201ENST00000297261 GPR137BO60478 399 aa13.85□□□□□ -0.19
SHH-201ENST00000297261 HOXC4P09017 264 aaPredicted RBP13.85□□□□□ -0.19
SHH-201ENST00000297261 HOXA1P49639 335 aaPredicted RBP13.85□□□□□ -0.19
SHH-201ENST00000297261 GFERP55789 205 aa13.85□□□□□ -0.19
SHH-201ENST00000297261 C21orf58P58505 322 aa13.85□□□□□ -0.19
SHH-201ENST00000297261 ZNF85Q03923 595 aa13.85□□□□□ -0.19
SHH-201ENST00000297261 NCMAPQ5T1S8 102 aa13.85□□□□□ -0.19
SHH-201ENST00000297261 SHEQ5VZ18 495 aa13.85□□□□□ -0.19
SHH-201ENST00000297261 OR2T2Q6IF00 324 aa13.85□□□□□ -0.19
SHH-201ENST00000297261 OR6S1Q8NH40 331 aa13.85□□□□□ -0.19
SHH-201ENST00000297261 AKR7LQ8NHP1 331 aa13.85□□□□□ -0.19
SHH-201ENST00000297261 CCDC74AQ96AQ1 378 aa13.85□□□□□ -0.19
SHH-201ENST00000297261 C2orf50Q96LR7 162 aa13.85□□□□□ -0.19
SHH-201ENST00000297261 A0A0B4J293 547 aa13.84□□□□□ -0.19
SHH-201ENST00000297261 HSPB6O14558 160 aa13.84□□□□□ -0.19
SHH-201ENST00000297261 GALR3O60755 368 aaPredicted RBP13.84□□□□□ -0.19
SHH-201ENST00000297261 CTAG2O75638 210 aa13.84□□□□□ -0.19
SHH-201ENST00000297261 IL33O95760 270 aa13.84□□□□□ -0.19
SHH-201ENST00000297261 DDAH2O95865 285 aa13.84□□□□□ -0.19
SHH-201ENST00000297261 IL9P15248 144 aa13.84□□□□□ -0.19
SHH-201ENST00000297261 DUSP3P51452 185 aaPredicted RBP13.84□□□□□ -0.19
SHH-201ENST00000297261 TMEM41BQ5BJD5 291 aa13.84□□□□□ -0.19
SHH-201ENST00000297261 C1orf87Q8N0U7 546 aa13.84□□□□□ -0.19
SHH-201ENST00000297261 TMEM229BQ8NBD8 167 aa13.84□□□□□ -0.19
SHH-201ENST00000297261 OR51E1Q8TCB6 317 aa13.84□□□□□ -0.19
SHH-201ENST00000297261 RXFP4Q8TDU9 374 aa13.84□□□□□ -0.19
SHH-201ENST00000297261 PIGCQ92535 297 aa13.84□□□□□ -0.19
SHH-201ENST00000297261 CMTM3Q96MX0 182 aa13.84□□□□□ -0.19
SHH-201ENST00000297261 ZNF681Q96N22 645 aa13.84□□□□□ -0.19
SHH-201ENST00000297261 ZNF2Q9BSG1 426 aaPredicted RBP13.84□□□□□ -0.19
SHH-201ENST00000297261 LY86O95711 162 aa13.84□□□□□ -0.19
SHH-201ENST00000297261 CST9LP1Q5W188 147 aa13.84□□□□□ -0.19
SHH-201ENST00000297261 ANKRD16Q6P6B7 361 aa13.84□□□□□ -0.19
SHH-201ENST00000297261 IL34Q6ZMJ4 242 aa13.84□□□□□ -0.19
SHH-201ENST00000297261 SKA3Q8IX90 412 aa13.84□□□□□ -0.19
SHH-201ENST00000297261 LGI3Q8N145 548 aa13.84□□□□□ -0.19
SHH-201ENST00000297261 OR5AP2Q8NGF4 316 aa13.84□□□□□ -0.19
SHH-201ENST00000297261 MMP26Q9NRE1 261 aa13.84□□□□□ -0.19
SHH-201ENST00000297261 C19orf12Q9NSK7 152 aa13.84□□□□□ -0.19
SHH-201ENST00000297261 SLC39A9Q9NUM3 307 aa13.84□□□□□ -0.19
SHH-201ENST00000297261 AK3Q9UIJ7 227 aa13.84□□□□□ -0.19
SHH-201ENST00000297261 ARG1P05089 322 aa13.84□□□□□ -0.19
SHH-201ENST00000297261 LAP3P28838 519 aa13.84□□□□□ -0.19
SHH-201ENST00000297261 MRM1Q6IN84 353 aaKnown RBP13.84□□□□□ -0.19
SHH-201ENST00000297261 EXD3Q8N9H8 876 aa13.84□□□□□ -0.19
SHH-201ENST00000297261 ZFP62Q8NB50 900 aaPredicted RBP13.84□□□□□ -0.19
SHH-201ENST00000297261 ASB13Q8WXK3 278 aa13.84□□□□□ -0.19
SHH-201ENST00000297261 METTL9Q9H1A3 318 aa13.84□□□□□ -0.19
SHH-201ENST00000297261 GNG13Q9P2W3 67 aa13.84□□□□□ -0.19
SHH-201ENST00000297261 C19orf25Q9UFG5 118 aaPredicted RBP13.84□□□□□ -0.19
SHH-201ENST00000297261 GUK1Q16774 197 aa13.84□□□□□ -0.19
SHH-201ENST00000297261 MIDNQ504T8 468 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms