RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 RNH1P13489 461 aaKnown RBP3.85□□□□□ -1.79
CD44-202ENST00000278385 HIST1H1CP16403 213 aaKnown RBP3.85□□□□□ -1.79
CD44-202ENST00000278385 CRABP2P29373 138 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 SERPINB1P30740 379 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 RPL4P36578 427 aaKnown RBP3.85□□□□□ -1.79
CD44-202ENST00000278385 RPL3P39023 403 aaKnown RBP3.85□□□□□ -1.79
CD44-202ENST00000278385 CYB561P49447 251 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 DNA2P51530 1060 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 IDH3GP51553 393 aaPredicted RBP3.85□□□□□ -1.79
CD44-202ENST00000278385 SEC61A1P61619 476 aaKnown RBP3.85□□□□□ -1.79
CD44-202ENST00000278385 BTG1P62324 171 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 TLE4Q04727 773 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 MLLT11Q13015 90 aaPredicted RBP3.85□□□□□ -1.79
CD44-202ENST00000278385 SRSF6Q13247 344 aaKnown RBP3.85□□□□□ -1.79
CD44-202ENST00000278385 EIF4EBP2Q13542 120 aaPredicted RBP3.85□□□□□ -1.79
CD44-202ENST00000278385 ZNF234Q14588 700 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 LAGE3Q14657 143 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 GNMTQ14749 295 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 KIR2DS5Q14953 304 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 CCDC6Q16204 474 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 DUSP5Q16690 384 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 TIGITQ495A1 244 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 ACSM3Q53FZ2 586 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 EIPR1Q53HC9 387 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 MS4A13Q5J8X5 152 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 CCNJQ5T5M9 372 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 OGFRL1Q5TC84 451 aaPredicted RBP3.85□□□□□ -1.79
CD44-202ENST00000278385 STPG1Q5TH74 334 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 ZNF554Q86TJ5 538 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 TRAPPC5Q8IUR0 188 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 WDFY1Q8IWB7 410 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 DNAJC22Q8N4W6 341 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 MREGQ8N565 214 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 MAPKAPK5-AS1Q8N8E1 139 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 TMEM35BQ8NCS4 154 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 MDS2Q8NDY4 140 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 CCDC54Q8NEL0 328 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 OR1J1Q8NGS3 322 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 OR51F2Q8NH61 342 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 PIGXQ8TBF5 258 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 FBXO25Q8TCJ0 367 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 TOMM40LQ969M1 308 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 NTNG2Q96CW9 530 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 FBXO17Q96EF6 278 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 BTN2A3PQ96KV6 586 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 EPYCQ99645 322 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 NIPSNAP1Q9BPW8 284 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 SLC35A5Q9BS91 424 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 MRPS26Q9BYN8 205 aaKnown RBP3.85□□□□□ -1.79
CD44-202ENST00000278385 SHARPINQ9H0F6 387 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 FNDC4Q9H6D8 234 aaPredicted RBP3.85□□□□□ -1.79
CD44-202ENST00000278385 ZDHHC4Q9NPG8 344 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 TMEM9BQ9NQ34 198 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 INIPQ9NRY2 104 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 AGPAT4Q9NRZ5 378 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 GID8Q9NWU2 228 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 CLN6Q9NWW5 311 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 CCDC59Q9P031 241 aaKnown RBP3.85□□□□□ -1.79
CD44-202ENST00000278385 TSC2P49815 1807 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 ANK1P16157 1881 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 MYH15Q9Y2K3 1946 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 F5P12259 2224 aa3.85□□□□□ -1.79
CD44-202ENST00000278385 COL4A2P08572 1712 aa3.84□□□□□ -1.79
CD44-202ENST00000278385 ASPDHA6ND91 283 aa3.84□□□□□ -1.79
CD44-202ENST00000278385 OR2AT4A6NND4 320 aa3.84□□□□□ -1.79
CD44-202ENST00000278385 F5H5T6 163 aa3.84□□□□□ -1.79
CD44-202ENST00000278385 J3QLI3 93 aa3.84□□□□□ -1.79
CD44-202ENST00000278385 CDX4O14627 284 aaPredicted RBP3.84□□□□□ -1.79
CD44-202ENST00000278385 CXCL13O43927 109 aa3.84□□□□□ -1.79
CD44-202ENST00000278385 WDR1O75083 606 aa3.84□□□□□ -1.79
CD44-202ENST00000278385 ALOX12BO75342 701 aa3.84□□□□□ -1.79
CD44-202ENST00000278385 IGLV3-19P01714 112 aa3.84□□□□□ -1.79
CD44-202ENST00000278385 IGLV3-25P01717 112 aa3.84□□□□□ -1.79
CD44-202ENST00000278385 SERPINA5P05154 406 aa3.84□□□□□ -1.79
CD44-202ENST00000278385 C8orf88P0DMB2 117 aa3.84□□□□□ -1.79
CD44-202ENST00000278385 UCHL3P15374 230 aa3.84□□□□□ -1.79
CD44-202ENST00000278385 CD36P16671 472 aa3.84□□□□□ -1.79
CD44-202ENST00000278385 CSRP1P21291 193 aaKnown RBP3.84□□□□□ -1.79
CD44-202ENST00000278385 S100A1P23297 94 aa3.84□□□□□ -1.79
CD44-202ENST00000278385 EDNRAP25101 427 aa3.84□□□□□ -1.79
CD44-202ENST00000278385 C21orf33P30042 268 aaPredicted RBP3.84□□□□□ -1.79
CD44-202ENST00000278385 RFC3P40938 356 aa3.84□□□□□ -1.79
CD44-202ENST00000278385 YAP1P46937 504 aaKnown RBP3.84□□□□□ -1.79
CD44-202ENST00000278385 HCAR3P49019 387 aa3.84□□□□□ -1.79
CD44-202ENST00000278385 SERPINB8P50452 374 aa3.84□□□□□ -1.79
CD44-202ENST00000278385 CDK9P50750 372 aaKnown RBP3.84□□□□□ -1.79
CD44-202ENST00000278385 CAV2P51636 162 aa3.84□□□□□ -1.79
CD44-202ENST00000278385 PSME3P61289 254 aa3.84□□□□□ -1.79
CD44-202ENST00000278385 ASAH1Q13510 395 aa3.84□□□□□ -1.79
CD44-202ENST00000278385 FLOT2Q14254 428 aa3.84□□□□□ -1.79
CD44-202ENST00000278385 ARL6IP1Q15041 203 aa3.84□□□□□ -1.79
CD44-202ENST00000278385 SLC9A3R2Q15599 337 aa3.84□□□□□ -1.79
CD44-202ENST00000278385 TMEM176BQ3YBM2 270 aaPredicted RBP3.84□□□□□ -1.79
CD44-202ENST00000278385 SPIN3Q5JUX0 258 aa3.84□□□□□ -1.79
CD44-202ENST00000278385 MEDAGQ5VYS4 303 aa3.84□□□□□ -1.79
CD44-202ENST00000278385 TMEM215Q68D42 235 aa3.84□□□□□ -1.79
CD44-202ENST00000278385 TRNP1Q6NT89 227 aa3.84□□□□□ -1.79
CD44-202ENST00000278385 ZNF730Q6ZMV8 503 aa3.84□□□□□ -1.79
CD44-202ENST00000278385 Q6ZSR9 355 aa3.84□□□□□ -1.79
CD44-202ENST00000278385 PIWIL4Q7Z3Z4 852 aaKnown RBP3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms