RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 TFPI2P48307 235 aa11.65□□□□□ -0.54
MSH2-201ENST00000233146 MMP16P51512 607 aa11.65□□□□□ -0.54
MSH2-201ENST00000233146 ELLP55199 621 aaPredicted RBP11.65□□□□□ -0.54
MSH2-201ENST00000233146 RHOAP61586 193 aa11.65□□□□□ -0.54
MSH2-201ENST00000233146 COL10A1Q03692 680 aa11.65□□□□□ -0.54
MSH2-201ENST00000233146 TGM3Q08188 693 aa11.65□□□□□ -0.54
MSH2-201ENST00000233146 FAM166AQ6J272 317 aa11.65□□□□□ -0.54
MSH2-201ENST00000233146 ZNF679Q8IYX0 411 aa11.65□□□□□ -0.54
MSH2-201ENST00000233146 OR52E1Q8NGJ3 308 aa11.65□□□□□ -0.54
MSH2-201ENST00000233146 PPTC7Q8NI37 304 aa11.65□□□□□ -0.54
MSH2-201ENST00000233146 TMEM239Q8WW34 195 aa11.65□□□□□ -0.54
MSH2-201ENST00000233146 TSLPQ969D9 159 aa11.65□□□□□ -0.54
MSH2-201ENST00000233146 MIEN1Q9BRT3 115 aa11.65□□□□□ -0.54
MSH2-201ENST00000233146 SPATC1LQ9H0A9 340 aa11.65□□□□□ -0.54
MSH2-201ENST00000233146 FRRS1LQ9P0K9 344 aa11.65□□□□□ -0.54
MSH2-201ENST00000233146 TRAV27A0A087WT01 109 aa11.65□□□□□ -0.55
MSH2-201ENST00000233146 SLC17A2O00624 439 aa11.65□□□□□ -0.55
MSH2-201ENST00000233146 ERAL1O75616 437 aaKnown RBP11.65□□□□□ -0.55
MSH2-201ENST00000233146 HMGN2P05204 90 aaKnown RBP11.65□□□□□ -0.55
MSH2-201ENST00000233146 SRP19P09132 144 aaKnown RBP11.65□□□□□ -0.55
MSH2-201ENST00000233146 GIMD1P0DJR0 217 aa11.65□□□□□ -0.55
MSH2-201ENST00000233146 FUT3P21217 361 aa11.65□□□□□ -0.55
MSH2-201ENST00000233146 DIO1P49895 249 aa11.65□□□□□ -0.55
MSH2-201ENST00000233146 LBX1P52954 281 aa11.65□□□□□ -0.55
MSH2-201ENST00000233146 ATP6V1FQ16864 119 aa11.65□□□□□ -0.55
MSH2-201ENST00000233146 OR2L3Q8NG85 312 aa11.65□□□□□ -0.55
MSH2-201ENST00000233146 ZNRF4Q8WWF5 429 aa11.65□□□□□ -0.55
MSH2-201ENST00000233146 TMEM18Q96B42 140 aa11.65□□□□□ -0.55
MSH2-201ENST00000233146 ZNF764Q96H86 408 aaPredicted RBP11.65□□□□□ -0.55
MSH2-201ENST00000233146 FAM83CQ9BQN1 747 aa11.65□□□□□ -0.55
MSH2-201ENST00000233146 AHSPQ9NZD4 102 aa11.65□□□□□ -0.55
MSH2-201ENST00000233146 RPH3ALQ9UNE2 315 aa11.65□□□□□ -0.55
MSH2-201ENST00000233146 CHD3Q12873 2000 aaKnown RBP11.64□□□□□ -0.55
MSH2-201ENST00000233146 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.64□□□□□ -0.55
MSH2-201ENST00000233146 XKRY2A2RUG3 117 aa11.64□□□□□ -0.55
MSH2-201ENST00000233146 XKRYO14609 159 aa11.64□□□□□ -0.55
MSH2-201ENST00000233146 C1QL1O75973 258 aa11.64□□□□□ -0.55
MSH2-201ENST00000233146 CHRNB4P30926 498 aa11.64□□□□□ -0.55
MSH2-201ENST00000233146 NOVA1P51513 510 aaKnown RBP11.64□□□□□ -0.55
MSH2-201ENST00000233146 TBPL1P62380 186 aa11.64□□□□□ -0.55
MSH2-201ENST00000233146 FOXF1Q12946 379 aa11.64□□□□□ -0.55
MSH2-201ENST00000233146 NKAIN1Q4KMZ8 207 aa11.64□□□□□ -0.55
MSH2-201ENST00000233146 TMEM128Q5BJH2 165 aa11.64□□□□□ -0.55
MSH2-201ENST00000233146 RNF219Q5W0B1 726 aaPredicted RBP11.64□□□□□ -0.55
MSH2-201ENST00000233146 P4HA3Q7Z4N8 544 aa11.64□□□□□ -0.55
MSH2-201ENST00000233146 GBGT1Q8N5D6 347 aa11.64□□□□□ -0.55
MSH2-201ENST00000233146 C16orf58Q96GQ5 468 aa11.64□□□□□ -0.55
MSH2-201ENST00000233146 HIST1H2AAQ96QV6 131 aa11.64□□□□□ -0.55
MSH2-201ENST00000233146 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.64□□□□□ -0.55
MSH2-201ENST00000233146 SERTAD3Q9UJW9 196 aa11.64□□□□□ -0.55
MSH2-201ENST00000233146 RBFOX3A6NFN3 312 aa11.64□□□□□ -0.55
MSH2-201ENST00000233146 PPP5D1E7EU14 171 aa11.64□□□□□ -0.55
MSH2-201ENST00000233146 C1QTNF3-AMACRE9PGA6 284 aa11.64□□□□□ -0.55
MSH2-201ENST00000233146 CATP04040 527 aaKnown RBP11.64□□□□□ -0.55
MSH2-201ENST00000233146 ZNF708P17019 499 aa11.64□□□□□ -0.55
MSH2-201ENST00000233146 BCKDHBP21953 392 aa11.64□□□□□ -0.55
MSH2-201ENST00000233146 S100A10P60903 97 aa11.64□□□□□ -0.55
MSH2-201ENST00000233146 RNF151Q2KHN1 245 aa11.64□□□□□ -0.55
MSH2-201ENST00000233146 PHF19Q5T6S3 580 aa11.64□□□□□ -0.55
MSH2-201ENST00000233146 LYG1Q8N1E2 194 aa11.64□□□□□ -0.55
MSH2-201ENST00000233146 ARL14EPQ8N8R7 260 aaPredicted RBP11.64□□□□□ -0.55
MSH2-201ENST00000233146 OR52E2Q8NGJ4 325 aa11.64□□□□□ -0.55
MSH2-201ENST00000233146 OR51A7Q8NH64 312 aa11.64□□□□□ -0.55
MSH2-201ENST00000233146 BPIFA2Q96DR5 249 aa11.64□□□□□ -0.55
MSH2-201ENST00000233146 CREBZFQ9NS37 354 aa11.64□□□□□ -0.55
MSH2-201ENST00000233146 TMEM242Q9NWH2 141 aa11.64□□□□□ -0.55
MSH2-201ENST00000233146 B3GAT1Q9P2W7 334 aa11.64□□□□□ -0.55
MSH2-201ENST00000233146 FCF1Q9Y324 198 aaKnown RBP11.64□□□□□ -0.55
MSH2-201ENST00000233146 DYRK1BQ9Y463 629 aa11.64□□□□□ -0.55
MSH2-201ENST00000233146 B4DEV8 164 aa11.63□□□□□ -0.55
MSH2-201ENST00000233146 UPK3AO75631 287 aa11.63□□□□□ -0.55
MSH2-201ENST00000233146 ZIC2O95409 532 aaPredicted RBP11.63□□□□□ -0.55
MSH2-201ENST00000233146 SERPINA2P20848 420 aa11.63□□□□□ -0.55
MSH2-201ENST00000233146 BSGP35613 385 aa11.63□□□□□ -0.55
MSH2-201ENST00000233146 ZNF595Q8IYB9 648 aa11.63□□□□□ -0.55
MSH2-201ENST00000233146 APCDD1LQ8NCL9 501 aa11.63□□□□□ -0.55
MSH2-201ENST00000233146 ZNF480Q8WV37 535 aa11.63□□□□□ -0.55
MSH2-201ENST00000233146 TMEM106AQ96A25 262 aa11.63□□□□□ -0.55
MSH2-201ENST00000233146 TP53RKQ96S44 253 aa11.63□□□□□ -0.55
MSH2-201ENST00000233146 C20orf144Q9BQM9 153 aa11.63□□□□□ -0.55
MSH2-201ENST00000233146 GINS3Q9BRX5 216 aa11.63□□□□□ -0.55
MSH2-201ENST00000233146 ANGPTL4Q9BY76 406 aa11.63□□□□□ -0.55
MSH2-201ENST00000233146 SMIM3Q9BZL3 60 aa11.63□□□□□ -0.55
MSH2-201ENST00000233146 ZMAT3Q9HA38 289 aaKnown RBP11.63□□□□□ -0.55
MSH2-201ENST00000233146 PLSCR2Q9NRY7 297 aa11.63□□□□□ -0.55
MSH2-201ENST00000233146 FKBP11Q9NYL4 201 aa11.63□□□□□ -0.55
MSH2-201ENST00000233146 PQBP1O60828 265 aaKnown RBP11.63□□□□□ -0.55
MSH2-201ENST00000233146 RPP14O95059 124 aaKnown RBP11.63□□□□□ -0.55
MSH2-201ENST00000233146 SCGB1D1O95968 90 aa11.63□□□□□ -0.55
MSH2-201ENST00000233146 OR4Q2P0C623 313 aa11.63□□□□□ -0.55
MSH2-201ENST00000233146 TDGF1P13385 188 aa11.63□□□□□ -0.55
MSH2-201ENST00000233146 ZNF136P52737 540 aa11.63□□□□□ -0.55
MSH2-201ENST00000233146 PRPS1P60891 318 aa11.63□□□□□ -0.55
MSH2-201ENST00000233146 SPOCK1Q08629 439 aa11.63□□□□□ -0.55
MSH2-201ENST00000233146 NUMA1Q14980 2115 aa11.63□□□□□ -0.55
MSH2-201ENST00000233146 TMEM241Q24JQ0 296 aa11.63□□□□□ -0.55
MSH2-201ENST00000233146 NXPE4Q6UWF7 544 aa11.63□□□□□ -0.55
MSH2-201ENST00000233146 RFLNAQ6ZTI6 216 aa11.63□□□□□ -0.55
MSH2-201ENST00000233146 MRPL41Q8IXM3 137 aaKnown RBP11.63□□□□□ -0.55
MSH2-201ENST00000233146 MCHR2Q969V1 340 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms