RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 ZNF793Q6ZN11 406 aa13.16□□□□□ -0.3
PTPRA-201ENST00000216877 ZNF429Q86V71 674 aa13.16□□□□□ -0.3
PTPRA-201ENST00000216877 KLHDC8AQ8IYD2 350 aa13.16□□□□□ -0.3
PTPRA-201ENST00000216877 ZNF101Q8IZC7 436 aa13.16□□□□□ -0.3
PTPRA-201ENST00000216877 ACOT4Q8N9L9 421 aa13.16□□□□□ -0.3
PTPRA-201ENST00000216877 MUCL1Q96DR8 90 aa13.16□□□□□ -0.3
PTPRA-201ENST00000216877 OR5B2Q96R09 309 aa13.16□□□□□ -0.3
PTPRA-201ENST00000216877 SLC5A7Q9GZV3 580 aa13.16□□□□□ -0.3
PTPRA-201ENST00000216877 TAS2R4Q9NYW5 299 aa13.16□□□□□ -0.3
PTPRA-201ENST00000216877 A0A1B0GWA3 101 aa13.16□□□□□ -0.3
PTPRA-201ENST00000216877 A0A1W2PRU2 124 aa13.16□□□□□ -0.3
PTPRA-201ENST00000216877 AQP7O14520 342 aa13.16□□□□□ -0.3
PTPRA-201ENST00000216877 NSA2O95478 260 aaKnown RBP13.16□□□□□ -0.3
PTPRA-201ENST00000216877 DBIP07108 87 aaKnown RBP13.16□□□□□ -0.3
PTPRA-201ENST00000216877 BTN3A2P78410 334 aa13.16□□□□□ -0.3
PTPRA-201ENST00000216877 TMEM37Q8WXS4 190 aa13.16□□□□□ -0.3
PTPRA-201ENST00000216877 MALSU1Q96EH3 234 aa13.16□□□□□ -0.3
PTPRA-201ENST00000216877 SGPP1Q9BX95 441 aa13.16□□□□□ -0.3
PTPRA-201ENST00000216877 MRM2Q9UI43 246 aaKnown RBP13.16□□□□□ -0.3
PTPRA-201ENST00000216877 CASP8AP2Q9UKL3 1982 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 CCDC163A0A0D9SF12 145 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 C1QTNF3-AMACRE9PGA6 284 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 GALTP07902 379 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 OMGP23515 440 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 HOXA6P31267 233 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 OR3A1P47881 315 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 PAX5Q02548 391 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 C22orf39Q6P5X5 142 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 PEG10Q86TG7 708 aaKnown RBP13.15□□□□□ -0.3
PTPRA-201ENST00000216877 ZNF283Q8N7M2 679 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 PTPRDP23468 1912 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 GRM6O15303 877 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 CST2P09228 141 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 OR4A8P0C604 315 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 MMP9P14780 707 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 RPS2P15880 293 aaKnown RBP13.15□□□□□ -0.3
PTPRA-201ENST00000216877 RBMXP38159 391 aaKnown RBP13.15□□□□□ -0.3
PTPRA-201ENST00000216877 TSPAN7P41732 249 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 ZNF136P52737 540 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 HERPUD1Q15011 391 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 ELOBQ15370 118 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 TMEM35AQ53FP2 167 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 DMRTC1Q5HYR2 192 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 ANGPTL5Q86XS5 388 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 ST6GALNAC5Q9BVH7 336 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 MKKSQ9NPJ1 570 aaPredicted RBP13.15□□□□□ -0.3
PTPRA-201ENST00000216877 ASCL3Q9NQ33 180 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 ZNF860A6NHJ4 632 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 ZNF724A8MTY0 619 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 DIRAS3O95661 229 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 EOMESO95936 686 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 TLE1Q04724 770 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 NNATQ16517 81 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 CLEC18BQ6UXF7 455 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 COX15Q7KZN9 410 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 C7orf61Q8IZ16 206 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 ZFP62Q8NB50 900 aaPredicted RBP13.15□□□□□ -0.3
PTPRA-201ENST00000216877 OR51A2Q8NGJ7 313 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 ABHD5Q8WTS1 349 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 ELOVL3Q9HB03 270 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 HAO2Q9NYQ3 351 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 POMT1Q9Y6A1 747 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 CDH23Q9H251 3354 aa13.15□□□□□ -0.3
PTPRA-201ENST00000216877 PATJQ8NI35 1801 aa13.14□□□□□ -0.31
PTPRA-201ENST00000216877 SLC17A2O00624 439 aa13.14□□□□□ -0.31
PTPRA-201ENST00000216877 ZNF735P0CB33 412 aa13.14□□□□□ -0.31
PTPRA-201ENST00000216877 SLC35A1P78382 337 aa13.14□□□□□ -0.31
PTPRA-201ENST00000216877 THEM4Q5T1C6 240 aa13.14□□□□□ -0.31
PTPRA-201ENST00000216877 C1orf87Q8N0U7 546 aa13.14□□□□□ -0.31
PTPRA-201ENST00000216877 TMEM123Q8N131 208 aa13.14□□□□□ -0.31
PTPRA-201ENST00000216877 PRR18Q8N4B5 295 aa13.14□□□□□ -0.31
PTPRA-201ENST00000216877 SH3BGRL3Q9H299 93 aa13.14□□□□□ -0.31
PTPRA-201ENST00000216877 LIPGQ9Y5X9 500 aa13.14□□□□□ -0.31
PTPRA-201ENST00000216877 DHRS7CA6NNS2 312 aa13.14□□□□□ -0.31
PTPRA-201ENST00000216877 PRAMEF26H0Y7S4 382 aa13.14□□□□□ -0.31
PTPRA-201ENST00000216877 MASP2O00187 686 aa13.14□□□□□ -0.31
PTPRA-201ENST00000216877 CA11O75493 328 aa13.14□□□□□ -0.31
PTPRA-201ENST00000216877 MFSD12Q6NUT3 480 aa13.14□□□□□ -0.31
PTPRA-201ENST00000216877 TMEM184AQ6ZMB5 413 aa13.14□□□□□ -0.31
PTPRA-201ENST00000216877 CPEB3Q8NE35 698 aaKnown RBP13.14□□□□□ -0.31
PTPRA-201ENST00000216877 CDCA3Q99618 268 aaPredicted RBP13.14□□□□□ -0.31
PTPRA-201ENST00000216877 FAAP24Q9BTP7 215 aa13.14□□□□□ -0.31
PTPRA-201ENST00000216877 PLA2G2EQ9NZK7 142 aa13.14□□□□□ -0.31
PTPRA-201ENST00000216877 SUSD2Q9UGT4 822 aa13.14□□□□□ -0.31
PTPRA-201ENST00000216877 ARRB1P49407 418 aaPredicted RBP13.14□□□□□ -0.31
PTPRA-201ENST00000216877 JOSD1Q15040 202 aaPredicted RBP13.14□□□□□ -0.31
PTPRA-201ENST00000216877 PLXDC2Q6UX71 529 aa13.14□□□□□ -0.31
PTPRA-201ENST00000216877 VITQ6UXI7 678 aa13.14□□□□□ -0.31
PTPRA-201ENST00000216877 C1QL4Q86Z23 238 aa13.14□□□□□ -0.31
PTPRA-201ENST00000216877 C2orf15Q8WU43 125 aaKnown RBP13.14□□□□□ -0.31
PTPRA-201ENST00000216877 LCN9Q8WX39 176 aa13.14□□□□□ -0.31
PTPRA-201ENST00000216877 CABLES2Q9BTV7 478 aa13.14□□□□□ -0.31
PTPRA-201ENST00000216877 NMES1Q9C002 83 aa13.14□□□□□ -0.31
PTPRA-201ENST00000216877 FLRT3Q9NZU0 649 aa13.14□□□□□ -0.31
PTPRA-201ENST00000216877 PADI1Q9ULC6 663 aa13.14□□□□□ -0.31
PTPRA-201ENST00000216877 XKRY2A2RUG3 117 aa13.13□□□□□ -0.31
PTPRA-201ENST00000216877 XKRYO14609 159 aa13.13□□□□□ -0.31
PTPRA-201ENST00000216877 GLRA1P23415 457 aa13.13□□□□□ -0.31
PTPRA-201ENST00000216877 GABRA3P34903 492 aa13.13□□□□□ -0.31
PTPRA-201ENST00000216877 POLR2HP52434 150 aaKnown RBP13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms