RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 BPIFB3P59826 476 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 FAM189BP81408 668 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 SOWAHCQ53LP3 525 aaPredicted RBP4.25□□□□□ -1.73
SCN1A-220ENST00000641603 ZNF660Q6AZW8 331 aaPredicted RBP4.25□□□□□ -1.73
SCN1A-220ENST00000641603 MRPL54Q6P161 138 aaKnown RBP4.25□□□□□ -1.73
SCN1A-220ENST00000641603 ZNF160Q9HCG1 818 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 CHST11Q9NPF2 352 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 OSER1Q9NX31 292 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 TCFL5Q9UL49 500 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 A0A087WUU8 490 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 M0QYG6 137 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 GALR3O60755 368 aaPredicted RBP4.25□□□□□ -1.73
SCN1A-220ENST00000641603 CTSDP07339 412 aaPredicted RBP4.25□□□□□ -1.73
SCN1A-220ENST00000641603 ZNF28P17035 718 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 HOXA5P20719 270 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 SNRPNP63162 240 aaKnown RBP4.25□□□□□ -1.73
SCN1A-220ENST00000641603 SERF2P84101 59 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 MFSD12Q6NUT3 480 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 TMEM179BQ7Z7N9 219 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 LDLRAD3Q86YD5 345 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 NEIL2Q969S2 332 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 HIST1H2BAQ96A08 127 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 HHIPL1Q96JK4 782 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 SFXN1Q9H9B4 322 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 KCNK12Q9HB15 430 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 LYRM4Q9HD34 91 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 NAT8BQ9UHF3 227 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 IGLV3-10A0A075B6K4 115 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 PHF1O43189 567 aaPredicted RBP4.25□□□□□ -1.73
SCN1A-220ENST00000641603 DNPH1O43598 174 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 TCF21O43680 179 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 HLA-DQA1P01909 254 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 MDH2P40926 338 aaKnown RBP4.25□□□□□ -1.73
SCN1A-220ENST00000641603 CDKN2AP42771 156 aaKnown RBP4.25□□□□□ -1.73
SCN1A-220ENST00000641603 CTSCP53634 463 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 RPS18P62269 152 aaKnown RBP4.25□□□□□ -1.73
SCN1A-220ENST00000641603 PLGLAQ15195 96 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 NKG7Q16617 165 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 OR5A2Q8NGI9 324 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 IGSF21Q96ID5 467 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 TP53RKQ96S44 253 aa4.25□□□□□ -1.73
SCN1A-220ENST00000641603 A0A087WV62 115 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 TXNDC12O95881 172 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 HBQ1P09105 142 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 OR8G3PP0DMU2 310 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 SMPD1P17405 629 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 EPHA2P29317 976 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 FXYD4P59646 89 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 C19orf48Q6RUI8 117 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 NPSR1Q6W5P4 371 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 ACOT4Q8N9L9 421 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 OR4F5Q8NH21 305 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 FAM122AQ96E09 287 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 OR4F4Q96R69 305 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 ZFYVE21Q9BQ24 234 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 GOLGA2P5Q9HBQ8 144 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 USP54Q70EL1 1684 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 hCG_1809904A0A1W2PP81 198 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 A0A1W2PR64 198 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 A0A1W2PRV1 198 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 OGG1O15527 345 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 ALOX5APP20292 161 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 SP2Q02086 613 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 SPNS3Q6ZMD2 512 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 BPIFA4PQ86YQ2 179 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 OR4D6Q8NGJ1 314 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 MOB3AQ96BX8 217 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 TMEM231Q9H6L2 316 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 PTRH2Q9Y3E5 179 aaKnown RBP4.24□□□□□ -1.73
SCN1A-220ENST00000641603 KIAA1324LA8MWY0 1029 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-220ENST00000641603 H7C1C5 153 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 YIF1AO95070 293 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 NUDT3O95989 172 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 WNT11O96014 354 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 CEBPBP17676 345 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 OR1D4P47884 311 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 CDKN1CP49918 316 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-220ENST00000641603 UBE2G1P62253 170 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 GPM6BQ13491 265 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 SLC22A6Q4U2R8 563 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 LYPD8Q6UX82 237 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 GPR32P1Q8NGA4 272 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 HMGB4Q8WW32 186 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 PRO1933Q9H354 126 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 METTL7AQ9H8H3 244 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 CHEK1O14757 476 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 OMGP23515 440 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 CD52P31358 61 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 SELENOPP49908 381 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 AKR1C1Q04828 323 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 TMEM225Q6GV28 225 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 OTOP2Q7RTS6 562 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 OR4S1Q8NGB4 309 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 OR10G4Q8NGN3 311 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 DERL3Q96Q80 235 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-220ENST00000641603 TMEM238LA0A1B0GVL6 79 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 PRAMEF27A3QJZ7 478 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 A6NJY4 79 aa4.24□□□□□ -1.73
SCN1A-220ENST00000641603 H3BQ15 152 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms