RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 OXA1LQ15070 435 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 ZNF658BQ4V348 819 aaPredicted RBP5.57□□□□□ -1.52
SCN1A-217ENST00000637988 C9orf50Q5SZB4 431 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 TRNP1Q6NT89 227 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 LRRC56Q8IYG6 542 aaPredicted RBP5.57□□□□□ -1.52
SCN1A-217ENST00000637988 PTDSS2Q9BVG9 487 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 HEXA-AS1Q9H8Q6 139 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 A4GALTQ9NPC4 353 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 NRIP3Q9NQ35 241 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 YTHDF2Q9Y5A9 579 aaKnown RBP5.57□□□□□ -1.52
SCN1A-217ENST00000637988 ZNF816-ZNF321PA0A0X1KG74 233 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 ANKUB1A6NFN9 424 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 SNAP29O95721 258 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 LAP3P28838 519 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 FCER1GP30273 86 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 AFMIDQ63HM1 303 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 BTNL8Q6UX41 500 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 SEC22AQ96IW7 307 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 THAP7Q9BT49 309 aaPredicted RBP5.57□□□□□ -1.52
SCN1A-217ENST00000637988 GPR173Q9NS66 373 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 BABAM2Q9NXR7 383 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 GAR1Q9NY12 217 aaKnown RBP5.57□□□□□ -1.52
SCN1A-217ENST00000637988 ASIC5Q9NY37 505 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 CXXC1Q9P0U4 656 aaPredicted RBP5.57□□□□□ -1.52
SCN1A-217ENST00000637988 TMEM82A0PJX8 343 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 PRSS44E7EML9 344 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 SDHDO14521 159 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 CXCL13O43927 109 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 NXPH3O95157 252 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 SCGB1D1O95968 90 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 PMP2P02689 132 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 OPRK1P41145 380 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 C21orf58P58505 322 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 TMEM41BQ5BJD5 291 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 C18orf63Q68DL7 685 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 CNIH2Q6PI25 160 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 OR4C3Q8NH37 302 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 PAQR8Q8TEZ7 354 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 CLEC5AQ9NY25 188 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 ACTL6AO96019 429 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 CAPNS1P04632 268 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 VDAC1P21796 283 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 SOX8P57073 446 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 CSNK1G2P78368 415 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 CLDN10P78369 228 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 HOXC5Q00444 222 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 ELP2Q6IA86 826 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 ACSM6Q6P461 480 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 LGI3Q8N145 548 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 FAM58AQ8N1B3 248 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 FGF14Q92915 247 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 LRRC61Q9BV99 259 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 CHODLQ9H9P2 273 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 ICOSLGO75144 302 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 ELK1P19419 428 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 ACKR3P25106 362 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 PPICP45877 212 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 MNX1P50219 401 aaPredicted RBP5.57□□□□□ -1.52
SCN1A-217ENST00000637988 RAB5CP51148 216 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 UBE2KP61086 200 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 TESK1Q15569 626 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 NEURL3Q96EH8 262 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 RAB6CQ9H0N0 254 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 DUSP22Q9NRW4 184 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 DCAF13Q9NV06 445 aaKnown RBP5.57□□□□□ -1.52
SCN1A-217ENST00000637988 CTSFQ9UBX1 484 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 DNAJC15Q9Y5T4 150 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 YLPM1P49750 1951 aaKnown RBP5.57□□□□□ -1.52
SCN1A-217ENST00000637988 Q499Y3 187 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 MARCH8Q5T0T0 291 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 LCN8Q6JVE9 175 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 SSX7Q7RTT5 188 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 BCL7BQ9BQE9 202 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 NIPSNAP3BQ9BS92 247 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 OR2B2Q9GZK3 357 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 ADAMTS6Q9UKP5 1117 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 PRSS21Q9Y6M0 314 aa5.57□□□□□ -1.52
SCN1A-217ENST00000637988 RAB19A4D1S5 217 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 M0R082 166 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 CNR1P21554 472 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 ZBTB25P24278 435 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 PTGER1P34995 402 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 PCBP3P57721 371 aaKnown RBP5.56□□□□□ -1.52
SCN1A-217ENST00000637988 SLC25A30Q5SVS4 291 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 ANKRD34AQ69YU3 496 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 ABHD17CQ6PCB6 329 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 ANGPTL5Q86XS5 388 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 MUC20Q8N307 709 aaPredicted RBP5.56□□□□□ -1.52
SCN1A-217ENST00000637988 ARSGQ96EG1 525 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 GON7Q9BXV9 100 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 CLMPQ9H6B4 373 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 ERRFI1Q9UJM3 462 aaPredicted RBP5.56□□□□□ -1.52
SCN1A-217ENST00000637988 COA3Q9Y2R0 106 aaPredicted RBP5.56□□□□□ -1.52
SCN1A-217ENST00000637988 A0A1B0GWA3 101 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 K7ESF4 209 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 CHRM2P08172 466 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 COX7A1P24310 79 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 GABRA5P31644 462 aa5.56□□□□□ -1.52
SCN1A-217ENST00000637988 MDH2P40926 338 aaKnown RBP5.56□□□□□ -1.52
SCN1A-217ENST00000637988 FUT6P51993 359 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms