RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	DMRTA2	Q96SC8	542 aa		10.26	□□□□□ -0.77
CLN6-223	ENST00000637823	PPIL3	Q9H2H8	161 aa	Known RBP	10.26	□□□□□ -0.77
CLN6-223	ENST00000637823	HEATR1	Q9H583	2144 aa	Known RBP	10.26	□□□□□ -0.77
CLN6-223	ENST00000637823	CCDC59	Q9P031	241 aa	Known RBP	10.26	□□□□□ -0.77
CLN6-223	ENST00000637823	MEMO1	Q9Y316	297 aa		10.26	□□□□□ -0.77
CLN6-223	ENST00000637823	POLE	Q07864	2286 aa		10.26	□□□□□ -0.77
CLN6-223	ENST00000637823	TRBV5-7	A0A0A0MS05	114 aa		10.25	□□□□□ -0.77
CLN6-223	ENST00000637823	TRGV8	A0A0C4DH27	118 aa		10.25	□□□□□ -0.77
CLN6-223	ENST00000637823	ZNF503-AS2	A6NEH8	195 aa		10.25	□□□□□ -0.77
CLN6-223	ENST00000637823	P2RY10	O00398	339 aa		10.25	□□□□□ -0.77
CLN6-223	ENST00000637823	DVL2	O14641	736 aa		10.25	□□□□□ -0.77
CLN6-223	ENST00000637823	RAD51D	O75771	328 aa		10.25	□□□□□ -0.77
CLN6-223	ENST00000637823	DBH	P09172	617 aa		10.25	□□□□□ -0.77
CLN6-223	ENST00000637823	SRM	P19623	302 aa		10.25	□□□□□ -0.77
CLN6-223	ENST00000637823	APEX1	P27695	318 aa	Known RBP	10.25	□□□□□ -0.77
CLN6-223	ENST00000637823	SLC6A9	P48067	706 aa		10.25	□□□□□ -0.77
CLN6-223	ENST00000637823	RORC	P51449	518 aa		10.25	□□□□□ -0.77
CLN6-223	ENST00000637823	HSD17B12	Q53GQ0	312 aa		10.25	□□□□□ -0.77
CLN6-223	ENST00000637823	C1QTNF12	Q5T7M4	302 aa		10.25	□□□□□ -0.77
CLN6-223	ENST00000637823	ZNF474	Q6S9Z5	364 aa	Predicted RBP	10.25	□□□□□ -0.77
CLN6-223	ENST00000637823	BHLHA15	Q7RTS1	189 aa	Predicted RBP	10.25	□□□□□ -0.77
CLN6-223	ENST00000637823	MRGPRG	Q86SM5	289 aa		10.25	□□□□□ -0.77
CLN6-223	ENST00000637823	LUZP2	Q86TE4	346 aa		10.25	□□□□□ -0.77
CLN6-223	ENST00000637823	C17orf78	Q8N4C9	275 aa		10.25	□□□□□ -0.77
CLN6-223	ENST00000637823	CCDC54	Q8NEL0	328 aa		10.25	□□□□□ -0.77
CLN6-223	ENST00000637823	OR10AC1	Q8NH08	325 aa		10.25	□□□□□ -0.77
CLN6-223	ENST00000637823	TSEN15	Q8WW01	171 aa	Known RBP	10.25	□□□□□ -0.77
CLN6-223	ENST00000637823	RND1	Q92730	232 aa		10.25	□□□□□ -0.77
CLN6-223	ENST00000637823	CNTNAP3B	Q96NU0	1288 aa		10.25	□□□□□ -0.77
CLN6-223	ENST00000637823	TSC22D3	Q99576	134 aa		10.25	□□□□□ -0.77
CLN6-223	ENST00000637823	CNTNAP3	Q9BZ76	1288 aa		10.25	□□□□□ -0.77
CLN6-223	ENST00000637823	OR10A2	Q9H208	303 aa		10.25	□□□□□ -0.77
CLN6-223	ENST00000637823	SLC24A3	Q9HC58	644 aa		10.25	□□□□□ -0.77
CLN6-223	ENST00000637823	NOX4	Q9NPH5	578 aa		10.25	□□□□□ -0.77
CLN6-223	ENST00000637823	OBP2B	Q9NPH6	170 aa		10.25	□□□□□ -0.77
CLN6-223	ENST00000637823	SNTG1	Q9NSN8	517 aa		10.25	□□□□□ -0.77
CLN6-223	ENST00000637823	SH3BGRL2	Q9UJC5	107 aa		10.25	□□□□□ -0.77
CLN6-223	ENST00000637823	DHDH	Q9UQ10	334 aa		10.25	□□□□□ -0.77
CLN6-223	ENST00000637823	N6AMT1	Q9Y5N5	214 aa		10.25	□□□□□ -0.77
CLN6-223	ENST00000637823	PCNX1	Q96RV3	2341 aa		10.25	□□□□□ -0.77
CLN6-223	ENST00000637823	BAHCC1	Q9P281	2608 aa		10.25	□□□□□ -0.77
CLN6-223	ENST00000637823	BSN	Q9UPA5	3926 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	LOC100509620	A0A075B734	347 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823		A0A1B0GTI1	187 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823		A0A1B0GVI7	797 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	LOC107986453	A0A1B0GWG9	222 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823		A0A1W2PPK0	400 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823		A8MXE2	369 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	CASK	O14936	926 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	PIN1P1	O15428	100 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	SYT7	O43581	403 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	CLPX	O76031	633 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	SERPINA5	P05154	406 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	CD2	P06729	351 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	SLC2A1	P11166	492 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	ZNF12	P17014	697 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	BMP5	P22003	454 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	PAX7	P23759	505 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	STOM	P27105	288 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	HOXC12	P31275	282 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	MAGEB1	P43366	347 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	SOX2	P48431	317 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	MXD1	Q05195	221 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	LSAMP	Q13449	338 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	ST3GAL2	Q16842	350 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	FAM27D1	Q5T7N8	215 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	MDP1	Q86V88	176 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	CROCCP3	Q8IVE0	287 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	WDR31	Q8NA23	367 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	OR51A4	Q8NGJ6	313 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	OR13C3	Q8NGS6	347 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	OR51E1	Q8TCB6	317 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	ASB5	Q8WWX0	329 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	SLC25A46	Q96AG3	418 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	ZNF75A	Q96N20	296 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	KCNS3	Q9BQ31	491 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	SLIRP	Q9GZT3	109 aa	Known RBP	10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	NXF2	Q9GZY0	626 aa	Known RBP	10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	SLITRK2	Q9H156	845 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	MMP27	Q9H306	513 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	TPK1	Q9H3S4	243 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	NOX3	Q9HBY0	568 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	ELOVL5	Q9NYP7	299 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	ZNF319	Q9P2F9	582 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	OSGIN2	Q9Y236	505 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	AMDHD2	Q9Y303	409 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	A3GALT2	U3KPV4	340 aa		10.24	□□□□□ -0.77
CLN6-223	ENST00000637823	SHISA3	A0PJX4	238 aa		10.23	□□□□□ -0.77
CLN6-223	ENST00000637823	PDCD5	O14737	125 aa		10.23	□□□□□ -0.77
CLN6-223	ENST00000637823	TBX1	O43435	398 aa		10.23	□□□□□ -0.77
CLN6-223	ENST00000637823	IGLV3-1	P01715	115 aa		10.23	□□□□□ -0.77
CLN6-223	ENST00000637823	LCAT	P04180	440 aa		10.23	□□□□□ -0.77
CLN6-223	ENST00000637823	CLEC2L	P0C7M8	214 aa		10.23	□□□□□ -0.77
CLN6-223	ENST00000637823	CBR1	P16152	277 aa		10.23	□□□□□ -0.77
CLN6-223	ENST00000637823	PSMB1	P20618	241 aa	Known RBP	10.23	□□□□□ -0.77
CLN6-223	ENST00000637823	CCL1	P22362	96 aa		10.23	□□□□□ -0.77
CLN6-223	ENST00000637823	IL32	P24001	234 aa		10.23	□□□□□ -0.77
CLN6-223	ENST00000637823	APLNR	P35414	380 aa		10.23	□□□□□ -0.77
CLN6-223	ENST00000637823	TSC22D1	Q15714	1073 aa		10.23	□□□□□ -0.77
CLN6-223	ENST00000637823	ZNF404	Q494X3	552 aa		10.23	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms