RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 SLC7A6Q92536 515 aa15.6■□□□□ 0.09
CLN3-259ENST00000637551 RDH5Q92781 318 aa15.6■□□□□ 0.09
CLN3-259ENST00000637551 CNN2Q99439 309 aaKnown RBP15.6■□□□□ 0.09
CLN3-259ENST00000637551 REG4Q9BYZ8 158 aa15.6■□□□□ 0.09
CLN3-259ENST00000637551 SLC22A4Q9H015 551 aa15.6■□□□□ 0.09
CLN3-259ENST00000637551 OR51B6Q9H340 312 aa15.6■□□□□ 0.09
CLN3-259ENST00000637551 RGCCQ9H4X1 137 aa15.6■□□□□ 0.09
CLN3-259ENST00000637551 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.6■□□□□ 0.09
CLN3-259ENST00000637551 ABCA1O95477 2261 aa15.59■□□□□ 0.09
CLN3-259ENST00000637551 TANC2Q9HCD6 1990 aa15.59■□□□□ 0.09
CLN3-259ENST00000637551 CCDC182A6NF36 153 aa15.59■□□□□ 0.09
CLN3-259ENST00000637551 SNTNA6NMZ2 147 aa15.59■□□□□ 0.09
CLN3-259ENST00000637551 IQCF6A8MYZ5 107 aa15.59■□□□□ 0.09
CLN3-259ENST00000637551 F5H5K5 113 aa15.59■□□□□ 0.09
CLN3-259ENST00000637551 XRCC2O43543 280 aa15.59■□□□□ 0.09
CLN3-259ENST00000637551 ZNF254O75437 659 aa15.59■□□□□ 0.09
CLN3-259ENST00000637551 ALOX5APP20292 161 aa15.59■□□□□ 0.09
CLN3-259ENST00000637551 MPV17P39210 176 aa15.59■□□□□ 0.09
CLN3-259ENST00000637551 ZNF81P51508 661 aa15.59■□□□□ 0.09
CLN3-259ENST00000637551 RPS7P62081 194 aaKnown RBP15.59■□□□□ 0.09
CLN3-259ENST00000637551 SNRPGP62308 76 aaKnown RBP15.59■□□□□ 0.09
CLN3-259ENST00000637551 ROM1Q03395 351 aa15.59■□□□□ 0.09
CLN3-259ENST00000637551 CDK5R2Q13319 367 aa15.59■□□□□ 0.09
CLN3-259ENST00000637551 TAF13Q15543 124 aa15.59■□□□□ 0.09
CLN3-259ENST00000637551 MEDAGQ5VYS4 303 aa15.59■□□□□ 0.09
CLN3-259ENST00000637551 TCEANCQ8N8B7 351 aa15.59■□□□□ 0.09
CLN3-259ENST00000637551 SPSB4Q96A44 273 aa15.59■□□□□ 0.09
CLN3-259ENST00000637551 ZMYND19Q96E35 227 aaPredicted RBP15.59■□□□□ 0.09
CLN3-259ENST00000637551 MDFIQ99750 246 aa15.59■□□□□ 0.09
CLN3-259ENST00000637551 EGLN1Q9GZT9 426 aa15.59■□□□□ 0.09
CLN3-259ENST00000637551 RIBC2Q9H4K1 309 aa15.59■□□□□ 0.09
CLN3-259ENST00000637551 CHODLQ9H9P2 273 aa15.59■□□□□ 0.09
CLN3-259ENST00000637551 FZR1Q9UM11 496 aa15.59■□□□□ 0.09
CLN3-259ENST00000637551 HIVEP2P31629 2446 aa15.58■□□□□ 0.09
CLN3-259ENST00000637551 CR1P17927 2039 aa15.58■□□□□ 0.09
CLN3-259ENST00000637551 A0A096LNT2 108 aa15.58■□□□□ 0.08
CLN3-259ENST00000637551 H7C1Q1 480 aa15.58■□□□□ 0.08
CLN3-259ENST00000637551 IFNL4K9M1U5 179 aa15.58■□□□□ 0.08
CLN3-259ENST00000637551 TIMM8AO60220 97 aaPredicted RBP15.58■□□□□ 0.08
CLN3-259ENST00000637551 PSKH1P11801 424 aa15.58■□□□□ 0.08
CLN3-259ENST00000637551 TNFSF4P23510 183 aa15.58■□□□□ 0.08
CLN3-259ENST00000637551 HSD11B1P28845 292 aa15.58■□□□□ 0.08
CLN3-259ENST00000637551 HTR1FP30939 366 aa15.58■□□□□ 0.08
CLN3-259ENST00000637551 DDOSTP39656 456 aa15.58■□□□□ 0.08
CLN3-259ENST00000637551 TMEM33P57088 247 aa15.58■□□□□ 0.08
CLN3-259ENST00000637551 SNCBQ16143 134 aa15.58■□□□□ 0.08
CLN3-259ENST00000637551 SPATA46Q5T0L3 261 aa15.58■□□□□ 0.08
CLN3-259ENST00000637551 OTPQ5XKR4 325 aa15.58■□□□□ 0.08
CLN3-259ENST00000637551 EGFL6Q8IUX8 553 aa15.58■□□□□ 0.08
CLN3-259ENST00000637551 BBS1Q8NFJ9 593 aa15.58■□□□□ 0.08
CLN3-259ENST00000637551 CMBLQ96DG6 245 aa15.58■□□□□ 0.08
CLN3-259ENST00000637551 IMPAD1Q9NX62 359 aa15.58■□□□□ 0.08
CLN3-259ENST00000637551 LAMP5Q9UJQ1 280 aa15.58■□□□□ 0.08
CLN3-259ENST00000637551 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP15.58■□□□□ 0.08
CLN3-259ENST00000637551 TRIM64A6NGJ6 449 aa15.57■□□□□ 0.08
CLN3-259ENST00000637551 TRIM64BA6NI03 449 aa15.57■□□□□ 0.08
CLN3-259ENST00000637551 LCATP04180 440 aa15.57■□□□□ 0.08
CLN3-259ENST00000637551 RPS27P42677 84 aaKnown RBP15.57■□□□□ 0.08
CLN3-259ENST00000637551 CRYBB2P43320 205 aa15.57■□□□□ 0.08
CLN3-259ENST00000637551 SLC6A9P48067 706 aa15.57■□□□□ 0.08
CLN3-259ENST00000637551 SLC3A1Q07837 685 aa15.57■□□□□ 0.08
CLN3-259ENST00000637551 RIN1Q13671 783 aa15.57■□□□□ 0.08
CLN3-259ENST00000637551 MAD2L1BPQ15013 274 aaPredicted RBP15.57■□□□□ 0.08
CLN3-259ENST00000637551 KLBQ86Z14 1044 aa15.57■□□□□ 0.08
CLN3-259ENST00000637551 CELF2-AS1Q8N7Q2 184 aa15.57■□□□□ 0.08
CLN3-259ENST00000637551 OR8G5Q8NG78 346 aa15.57■□□□□ 0.08
CLN3-259ENST00000637551 OR13G1Q8NGZ3 307 aa15.57■□□□□ 0.08
CLN3-259ENST00000637551 ELMOD3Q96FG2 381 aa15.57■□□□□ 0.08
CLN3-259ENST00000637551 IL4I1Q96RQ9 567 aa15.57■□□□□ 0.08
CLN3-259ENST00000637551 REPIN1Q9BWE0 567 aaKnown RBP15.57■□□□□ 0.08
CLN3-259ENST00000637551 SAP30LQ9HAJ7 183 aa15.57■□□□□ 0.08
CLN3-259ENST00000637551 IGHV4-30-2A0A087WSY4 118 aa15.56■□□□□ 0.08
CLN3-259ENST00000637551 SLC16A6O15403 523 aa15.56■□□□□ 0.08
CLN3-259ENST00000637551 SELENOFO60613 162 aa15.56■□□□□ 0.08
CLN3-259ENST00000637551 TACSTD2P09758 323 aa15.56■□□□□ 0.08
CLN3-259ENST00000637551 NAT2P11245 290 aa15.56■□□□□ 0.08
CLN3-259ENST00000637551 TNFRSF1AP19438 455 aa15.56■□□□□ 0.08
CLN3-259ENST00000637551 NR4A2P43354 598 aa15.56■□□□□ 0.08
CLN3-259ENST00000637551 PSMA6P60900 246 aaKnown RBP15.56■□□□□ 0.08
CLN3-259ENST00000637551 DBPQ10586 325 aaPredicted RBP15.56■□□□□ 0.08
CLN3-259ENST00000637551 GK2Q14410 553 aaPredicted RBP15.56■□□□□ 0.08
CLN3-259ENST00000637551 OCLNQ16625 522 aa15.56■□□□□ 0.08
CLN3-259ENST00000637551 PGAP1Q75T13 922 aa15.56■□□□□ 0.08
CLN3-259ENST00000637551 PRSS45Q7RTY3 260 aa15.56■□□□□ 0.08
CLN3-259ENST00000637551 HIST2H2ABQ8IUE6 130 aaPredicted RBP15.56■□□□□ 0.08
CLN3-259ENST00000637551 HPS1Q92902 700 aa15.56■□□□□ 0.08
CLN3-259ENST00000637551 ZNF582Q96NG8 517 aaPredicted RBP15.56■□□□□ 0.08
CLN3-259ENST00000637551 MYCBPQ99417 103 aaPredicted RBP15.56■□□□□ 0.08
CLN3-259ENST00000637551 MROQ9BYG7 248 aa15.56■□□□□ 0.08
CLN3-259ENST00000637551 DCLRE1BQ9H816 532 aa15.56■□□□□ 0.08
CLN3-259ENST00000637551 CENPMQ9NSP4 180 aa15.56■□□□□ 0.08
CLN3-259ENST00000637551 DECR2Q9NUI1 292 aa15.56■□□□□ 0.08
CLN3-259ENST00000637551 CLN6Q9NWW5 311 aa15.56■□□□□ 0.08
CLN3-259ENST00000637551 IL19Q9UHD0 177 aa15.56■□□□□ 0.08
CLN3-259ENST00000637551 YLPM1P49750 1951 aaKnown RBP15.56■□□□□ 0.08
CLN3-259ENST00000637551 ZSCAN5BA6NJL1 495 aa15.55■□□□□ 0.08
CLN3-259ENST00000637551 CASQ2O14958 399 aaPredicted RBP15.55■□□□□ 0.08
CLN3-259ENST00000637551 RP2O75695 350 aa15.55■□□□□ 0.08
CLN3-259ENST00000637551 IGHV1-46P01743 117 aa15.55■□□□□ 0.08
CLN3-259ENST00000637551 H2BFMP0C1H6 154 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms