RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 ANXA2P07355 339 aaKnown RBP16.06■□□□□ 0.16
CLN3-254ENST00000637050 COX5BP10606 129 aa16.06■□□□□ 0.16
CLN3-254ENST00000637050 SRMP19623 302 aa16.06■□□□□ 0.16
CLN3-254ENST00000637050 PEX19P40855 299 aa16.06■□□□□ 0.16
CLN3-254ENST00000637050 TPTEP56180 551 aa16.06■□□□□ 0.16
CLN3-254ENST00000637050 GABRA6Q16445 453 aa16.06■□□□□ 0.16
CLN3-254ENST00000637050 TMEM53Q6P2H8 277 aa16.06■□□□□ 0.16
CLN3-254ENST00000637050 PCSK4Q6UW60 755 aa16.06■□□□□ 0.16
CLN3-254ENST00000637050 NR2C2APQ86WQ0 139 aa16.06■□□□□ 0.16
CLN3-254ENST00000637050 CCDC36Q8IYA8 594 aa16.06■□□□□ 0.16
CLN3-254ENST00000637050 C1orf162Q8NEQ5 155 aaPredicted RBP16.06■□□□□ 0.16
CLN3-254ENST00000637050 NANOS1Q8WY41 292 aaKnown RBP16.06■□□□□ 0.16
CLN3-254ENST00000637050 ORAI1Q96D31 301 aa16.06■□□□□ 0.16
CLN3-254ENST00000637050 OPN3Q9H1Y3 402 aaPredicted RBP16.06■□□□□ 0.16
CLN3-254ENST00000637050 PLEKHB1Q9UF11 243 aaPredicted RBP16.06■□□□□ 0.16
CLN3-254ENST00000637050 A0A075B6Q4 140 aa16.05■□□□□ 0.16
CLN3-254ENST00000637050 A0A1B0GTI1 187 aa16.05■□□□□ 0.16
CLN3-254ENST00000637050 SMIM30A4D0T7 59 aa16.05■□□□□ 0.16
CLN3-254ENST00000637050 LYZL6O75951 148 aa16.05■□□□□ 0.16
CLN3-254ENST00000637050 CD79AP11912 226 aa16.05■□□□□ 0.16
CLN3-254ENST00000637050 SLC6A9P48067 706 aa16.05■□□□□ 0.16
CLN3-254ENST00000637050 CAV3P56539 151 aa16.05■□□□□ 0.16
CLN3-254ENST00000637050 RAB1AP62820 205 aa16.05■□□□□ 0.16
CLN3-254ENST00000637050 HGFACQ04756 655 aa16.05■□□□□ 0.16
CLN3-254ENST00000637050 DYNC1I2Q13409 638 aaKnown RBP16.05■□□□□ 0.16
CLN3-254ENST00000637050 SFRP5Q5T4F7 317 aa16.05■□□□□ 0.16
CLN3-254ENST00000637050 OR51E1Q8TCB6 317 aa16.05■□□□□ 0.16
CLN3-254ENST00000637050 KCNS3Q9BQ31 491 aa16.05■□□□□ 0.16
CLN3-254ENST00000637050 DHDHQ9UQ10 334 aa16.05■□□□□ 0.16
CLN3-254ENST00000637050 N6AMT1Q9Y5N5 214 aa16.05■□□□□ 0.16
CLN3-254ENST00000637050 A0A0U1RQV5 110 aa16.05■□□□□ 0.16
CLN3-254ENST00000637050 E9PLN8 166 aa16.05■□□□□ 0.16
CLN3-254ENST00000637050 RAD51DO75771 328 aa16.05■□□□□ 0.16
CLN3-254ENST00000637050 NCR1O76036 304 aa16.05■□□□□ 0.16
CLN3-254ENST00000637050 IGLV3-1P01715 115 aa16.05■□□□□ 0.16
CLN3-254ENST00000637050 HOXB1P14653 301 aaPredicted RBP16.05■□□□□ 0.16
CLN3-254ENST00000637050 CCL1P22362 96 aa16.05■□□□□ 0.16
CLN3-254ENST00000637050 PMPCAQ10713 525 aa16.05■□□□□ 0.16
CLN3-254ENST00000637050 P2RY6Q15077 328 aa16.05■□□□□ 0.16
CLN3-254ENST00000637050 BEND4Q6ZU67 534 aa16.05■□□□□ 0.16
CLN3-254ENST00000637050 OR6Q1Q8NGQ2 317 aa16.05■□□□□ 0.16
CLN3-254ENST00000637050 PGAM5Q96HS1 289 aa16.05■□□□□ 0.16
CLN3-254ENST00000637050 A0A0G2JK05 382 aa16.04■□□□□ 0.16
CLN3-254ENST00000637050 IQCMA0A1B0GVH7 501 aa16.04■□□□□ 0.16
CLN3-254ENST00000637050 CIB4A0PJX0 185 aa16.04■□□□□ 0.16
CLN3-254ENST00000637050 C5orf63A6NC05 138 aa16.04■□□□□ 0.16
CLN3-254ENST00000637050 SYT7O43581 403 aa16.04■□□□□ 0.16
CLN3-254ENST00000637050 RAB3BP20337 219 aa16.04■□□□□ 0.16
CLN3-254ENST00000637050 GSG1Q2KHT4 349 aa16.04■□□□□ 0.16
CLN3-254ENST00000637050 CEP78Q5JTW2 689 aa16.04■□□□□ 0.16
CLN3-254ENST00000637050 LUZP2Q86TE4 346 aa16.04■□□□□ 0.16
CLN3-254ENST00000637050 ST6GALNAC3Q8NDV1 305 aa16.04■□□□□ 0.16
CLN3-254ENST00000637050 OR13C3Q8NGS6 347 aa16.04■□□□□ 0.16
CLN3-254ENST00000637050 DSPP15924 2871 aaKnown RBP16.03■□□□□ 0.16
CLN3-254ENST00000637050 LOC100509620A0A075B734 347 aa16.03■□□□□ 0.16
CLN3-254ENST00000637050 A0A1B0GVI7 797 aa16.03■□□□□ 0.16
CLN3-254ENST00000637050 CD2P06729 351 aa16.03■□□□□ 0.16
CLN3-254ENST00000637050 APEX1P27695 318 aaKnown RBP16.03■□□□□ 0.16
CLN3-254ENST00000637050 OPRM1P35372 400 aa16.03■□□□□ 0.16
CLN3-254ENST00000637050 BMXP51813 675 aa16.03■□□□□ 0.16
CLN3-254ENST00000637050 OR10A3P58181 314 aa16.03■□□□□ 0.16
CLN3-254ENST00000637050 STAC2Q6ZMT1 411 aa16.03■□□□□ 0.16
CLN3-254ENST00000637050 OR52H1Q8NGJ2 320 aa16.03■□□□□ 0.16
CLN3-254ENST00000637050 ZNF75AQ96N20 296 aa16.03■□□□□ 0.16
CLN3-254ENST00000637050 ZCCHC4Q9H5U6 513 aa16.03■□□□□ 0.16
CLN3-254ENST00000637050 SP140LQ9H930 580 aa16.03■□□□□ 0.16
CLN3-254ENST00000637050 TCF7L1Q9HCS4 588 aa16.03■□□□□ 0.16
CLN3-254ENST00000637050 GPR84Q9NQS5 396 aa16.03■□□□□ 0.16
CLN3-254ENST00000637050 ZNF275Q9NSD4 429 aaPredicted RBP16.03■□□□□ 0.16
CLN3-254ENST00000637050 TLN1Q9Y490 2541 aaKnown RBP16.03■□□□□ 0.16
CLN3-254ENST00000637050 TRAV8-7A0A075B6U6 113 aa16.02■□□□□ 0.16
CLN3-254ENST00000637050 A0A0G2JNJ9 132 aa16.02■□□□□ 0.16
CLN3-254ENST00000637050 CFL1P23528 166 aaKnown RBP16.02■□□□□ 0.16
CLN3-254ENST00000637050 PLP2Q04941 152 aa16.02■□□□□ 0.16
CLN3-254ENST00000637050 MOGQ16653 247 aa16.02■□□□□ 0.16
CLN3-254ENST00000637050 SNAI3Q3KNW1 292 aa16.02■□□□□ 0.16
CLN3-254ENST00000637050 Q6ZSR3 168 aa16.02■□□□□ 0.16
CLN3-254ENST00000637050 LRRTM1Q86UE6 522 aa16.02■□□□□ 0.16
CLN3-254ENST00000637050 MDP1Q86V88 176 aa16.02■□□□□ 0.16
CLN3-254ENST00000637050 CXorf67Q86X51 503 aaPredicted RBP16.02■□□□□ 0.16
CLN3-254ENST00000637050 ZNF584Q8IVC4 421 aa16.02■□□□□ 0.16
CLN3-254ENST00000637050 CROCCP3Q8IVE0 287 aa16.02■□□□□ 0.16
CLN3-254ENST00000637050 PLPP7Q8NBV4 271 aa16.02■□□□□ 0.16
CLN3-254ENST00000637050 WBP1Q96G27 269 aa16.02■□□□□ 0.16
CLN3-254ENST00000637050 LYZL4Q96KX0 146 aa16.02■□□□□ 0.16
CLN3-254ENST00000637050 C6orf62Q9GZU0 229 aaPredicted RBP16.02■□□□□ 0.16
CLN3-254ENST00000637050 SLITRK2Q9H156 845 aa16.02■□□□□ 0.16
CLN3-254ENST00000637050 OR10A2Q9H208 303 aa16.02■□□□□ 0.16
CLN3-254ENST00000637050 CRNNQ9UBG3 495 aaPredicted RBP16.02■□□□□ 0.16
CLN3-254ENST00000637050 Q9UFV3 132 aa16.02■□□□□ 0.16
CLN3-254ENST00000637050 ANKRD61A6NGH8 418 aa16.02■□□□□ 0.15
CLN3-254ENST00000637050 PDCD5O14737 125 aa16.02■□□□□ 0.15
CLN3-254ENST00000637050 TBX1O43435 398 aa16.02■□□□□ 0.15
CLN3-254ENST00000637050 LMX1BO60663 402 aa16.02■□□□□ 0.15
CLN3-254ENST00000637050 INHBBP09529 407 aa16.02■□□□□ 0.15
CLN3-254ENST00000637050 FSTP19883 344 aa16.02■□□□□ 0.15
CLN3-254ENST00000637050 STOMP27105 288 aa16.02■□□□□ 0.15
CLN3-254ENST00000637050 UBE2NP61088 152 aaKnown RBP16.02■□□□□ 0.15
CLN3-254ENST00000637050 TSC22D1Q15714 1073 aa16.02■□□□□ 0.15
CLN3-254ENST00000637050 ASPHD2Q6ICH7 369 aa16.02■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms