RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 FBXW12Q6X9E4 464 aa14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 DHRSXQ8N5I4 330 aa14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 RFLNBQ8N5W9 214 aa14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 ZNF283Q8N7M2 679 aa14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 WFDC11Q8NEX6 87 aa14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 CYGBQ8WWM9 190 aa14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 ASB17Q8WXJ9 295 aa14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 HAVCR1Q96D42 359 aa14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 CMBLQ96DG6 245 aa14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 MNTQ99583 582 aa14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 APOL4Q9BPW4 351 aa14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 RAB1BQ9H0U4 201 aa14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 PTTG3PQ9NZH4 202 aa14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 GPR160Q9UJ42 338 aa14.15□□□□□ -0.14
CCDC28A-202ENST00000611852 ITPR3Q14573 2671 aa14.14□□□□□ -0.15
CCDC28A-202ENST00000611852 C5orf63A6NC05 138 aa14.14□□□□□ -0.15
CCDC28A-202ENST00000611852 APOL3O95236 402 aa14.14□□□□□ -0.15
CCDC28A-202ENST00000611852 CLIC3O95833 236 aa14.14□□□□□ -0.15
CCDC28A-202ENST00000611852 F12P00748 615 aaPredicted RBP14.14□□□□□ -0.15
CCDC28A-202ENST00000611852 APOC1P02654 83 aa14.14□□□□□ -0.15
CCDC28A-202ENST00000611852 SLC2A1P11166 492 aa14.14□□□□□ -0.15
CCDC28A-202ENST00000611852 NAT2P11245 290 aa14.14□□□□□ -0.15
CCDC28A-202ENST00000611852 RAC2P15153 192 aa14.14□□□□□ -0.15
CCDC28A-202ENST00000611852 KITLGP21583 273 aa14.14□□□□□ -0.15
CCDC28A-202ENST00000611852 MTNR1AP48039 350 aa14.14□□□□□ -0.15
CCDC28A-202ENST00000611852 CX3CR1P49238 355 aa14.14□□□□□ -0.15
CCDC28A-202ENST00000611852 MMP15P51511 669 aa14.14□□□□□ -0.15
CCDC28A-202ENST00000611852 CXCR4P61073 352 aa14.14□□□□□ -0.15
CCDC28A-202ENST00000611852 ROM1Q03395 351 aa14.14□□□□□ -0.15
CCDC28A-202ENST00000611852 PRSS45Q7RTY3 260 aa14.14□□□□□ -0.15
CCDC28A-202ENST00000611852 HIST2H2ABQ8IUE6 130 aaPredicted RBP14.14□□□□□ -0.15
CCDC28A-202ENST00000611852 ADI1Q9BV57 179 aa14.14□□□□□ -0.15
CCDC28A-202ENST00000611852 TPK1Q9H3S4 243 aa14.14□□□□□ -0.15
CCDC28A-202ENST00000611852 LRRC42Q9Y546 428 aa14.14□□□□□ -0.15
CCDC28A-202ENST00000611852 LRP12Q9Y561 859 aa14.14□□□□□ -0.15
CCDC28A-202ENST00000611852 SNTNA6NMZ2 147 aa14.13□□□□□ -0.15
CCDC28A-202ENST00000611852 PSMD9O00233 223 aa14.13□□□□□ -0.15
CCDC28A-202ENST00000611852 SSX4O60224 188 aa14.13□□□□□ -0.15
CCDC28A-202ENST00000611852 LY6HO94772 140 aa14.13□□□□□ -0.15
CCDC28A-202ENST00000611852 ATP6V1E1P36543 226 aa14.13□□□□□ -0.15
CCDC28A-202ENST00000611852 GK2Q14410 553 aaPredicted RBP14.13□□□□□ -0.15
CCDC28A-202ENST00000611852 ZNF691Q5VV52 312 aa14.13□□□□□ -0.15
CCDC28A-202ENST00000611852 DEGS2Q6QHC5 323 aa14.13□□□□□ -0.15
CCDC28A-202ENST00000611852 ZNF322Q6U7Q0 402 aaPredicted RBP14.13□□□□□ -0.15
CCDC28A-202ENST00000611852 KRT77Q7Z794 578 aa14.13□□□□□ -0.15
CCDC28A-202ENST00000611852 SNX33Q8WV41 574 aa14.13□□□□□ -0.15
CCDC28A-202ENST00000611852 APH1BQ8WW43 257 aa14.13□□□□□ -0.15
CCDC28A-202ENST00000611852 GTF3AQ92664 365 aaKnown RBP14.13□□□□□ -0.15
CCDC28A-202ENST00000611852 Q96MT0 163 aa14.13□□□□□ -0.15
CCDC28A-202ENST00000611852 OR8B4Q96RC9 309 aa14.13□□□□□ -0.15
CCDC28A-202ENST00000611852 TTTY10Q9BZA0 68 aa14.13□□□□□ -0.15
CCDC28A-202ENST00000611852 NIPAL2Q9H841 368 aa14.13□□□□□ -0.15
CCDC28A-202ENST00000611852 PURGQ9UJV8 347 aaKnown RBP14.13□□□□□ -0.15
CCDC28A-202ENST00000611852 C17orf100A8MU93 164 aa14.12□□□□□ -0.15
CCDC28A-202ENST00000611852 ZNF670-ZNF695F2Z2N8 137 aa14.12□□□□□ -0.15
CCDC28A-202ENST00000611852 PHYHO14832 338 aa14.12□□□□□ -0.15
CCDC28A-202ENST00000611852 TIMM8AO60220 97 aaPredicted RBP14.12□□□□□ -0.15
CCDC28A-202ENST00000611852 ERCC1P07992 297 aaPredicted RBP14.12□□□□□ -0.15
CCDC28A-202ENST00000611852 OR2T7P0C7T2 308 aa14.12□□□□□ -0.15
CCDC28A-202ENST00000611852 HSPA13P48723 471 aa14.12□□□□□ -0.15
CCDC28A-202ENST00000611852 ZNF121P58317 390 aaPredicted RBP14.12□□□□□ -0.15
CCDC28A-202ENST00000611852 MALLQ13021 153 aa14.12□□□□□ -0.15
CCDC28A-202ENST00000611852 DNM1P46Q6ZS02 220 aa14.12□□□□□ -0.15
CCDC28A-202ENST00000611852 ZNF679Q8IYX0 411 aa14.12□□□□□ -0.15
CCDC28A-202ENST00000611852 OR2T27Q8NH04 317 aa14.12□□□□□ -0.15
CCDC28A-202ENST00000611852 NEU4Q8WWR8 484 aaPredicted RBP14.12□□□□□ -0.15
CCDC28A-202ENST00000611852 RNFT2Q96EX2 444 aa14.12□□□□□ -0.15
CCDC28A-202ENST00000611852 MROQ9BYG7 248 aa14.12□□□□□ -0.15
CCDC28A-202ENST00000611852 CGGBP1Q9UFW8 167 aaPredicted RBP14.12□□□□□ -0.15
CCDC28A-202ENST00000611852 N6AMT1Q9Y5N5 214 aa14.12□□□□□ -0.15
CCDC28A-202ENST00000611852 VPS13CQ709C8 3753 aa14.12□□□□□ -0.15
CCDC28A-202ENST00000611852 A0A1W2PQL4 384 aaPredicted RBP14.11□□□□□ -0.15
CCDC28A-202ENST00000611852 PLSCR5A0PG75 271 aa14.11□□□□□ -0.15
CCDC28A-202ENST00000611852 H0YAE9 185 aa14.11□□□□□ -0.15
CCDC28A-202ENST00000611852 ZNF254O75437 659 aa14.11□□□□□ -0.15
CCDC28A-202ENST00000611852 WBP4O75554 376 aaKnown RBP14.11□□□□□ -0.15
CCDC28A-202ENST00000611852 MT-ND5P03915 603 aa14.11□□□□□ -0.15
CCDC28A-202ENST00000611852 ANXA2P07355 339 aaKnown RBP14.11□□□□□ -0.15
CCDC28A-202ENST00000611852 LIPAP38571 399 aa14.11□□□□□ -0.15
CCDC28A-202ENST00000611852 CAPGP40121 348 aa14.11□□□□□ -0.15
CCDC28A-202ENST00000611852 AQP4P55087 323 aa14.11□□□□□ -0.15
CCDC28A-202ENST00000611852 IL5RAQ01344 420 aa14.11□□□□□ -0.15
CCDC28A-202ENST00000611852 ZNF92Q03936 586 aa14.11□□□□□ -0.15
CCDC28A-202ENST00000611852 IL18R1Q13478 541 aa14.11□□□□□ -0.15
CCDC28A-202ENST00000611852 CLEC12BQ2HXU8 276 aa14.11□□□□□ -0.15
CCDC28A-202ENST00000611852 GLYATL3Q5SZD4 288 aa14.11□□□□□ -0.15
CCDC28A-202ENST00000611852 USP51Q70EK9 711 aa14.11□□□□□ -0.15
CCDC28A-202ENST00000611852 SSX6Q7RTT6 188 aa14.11□□□□□ -0.15
CCDC28A-202ENST00000611852 OR10H4Q8NGA5 316 aa14.11□□□□□ -0.15
CCDC28A-202ENST00000611852 OR2AE1Q8NHA4 323 aa14.11□□□□□ -0.15
CCDC28A-202ENST00000611852 Q96MF0 132 aa14.11□□□□□ -0.15
CCDC28A-202ENST00000611852 TBX5Q99593 518 aa14.11□□□□□ -0.15
CCDC28A-202ENST00000611852 SP140LQ9H930 580 aa14.11□□□□□ -0.15
CCDC28A-202ENST00000611852 CYSLTR2Q9NS75 346 aa14.11□□□□□ -0.15
CCDC28A-202ENST00000611852 CHD3Q12873 2000 aaKnown RBP14.11□□□□□ -0.15
CCDC28A-202ENST00000611852 CELSR1Q9NYQ6 3014 aa14.11□□□□□ -0.15
CCDC28A-202ENST00000611852 ZSCAN5BA6NJL1 495 aa14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 H0YJX3 145 aa14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 J3QRE1 110 aa14.1□□□□□ -0.15
CCDC28A-202ENST00000611852 GNAO1P09471 354 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms