RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 MOB1AQ9H8S9 216 aa12.4□□□□□ -0.42
UPF1-211ENST00000600868 ISYNA1Q9NPH2 558 aa12.4□□□□□ -0.42
UPF1-211ENST00000600868 TRIM36Q9NQ86 728 aa12.4□□□□□ -0.42
UPF1-211ENST00000600868 KCNN3Q9UGI6 736 aa12.4□□□□□ -0.42
UPF1-211ENST00000600868 NUFIP1Q9UHK0 495 aaKnown RBP12.4□□□□□ -0.42
UPF1-211ENST00000600868 OR52A1Q9UKL2 312 aa12.4□□□□□ -0.42
UPF1-211ENST00000600868 A1L4Q6 167 aa12.39□□□□□ -0.43
UPF1-211ENST00000600868 E9PI62 339 aa12.39□□□□□ -0.43
UPF1-211ENST00000600868 ABCD4O14678 606 aa12.39□□□□□ -0.43
UPF1-211ENST00000600868 OGG1O15527 345 aa12.39□□□□□ -0.43
UPF1-211ENST00000600868 SMPD2O60906 423 aa12.39□□□□□ -0.43
UPF1-211ENST00000600868 LALBAP00709 142 aa12.39□□□□□ -0.43
UPF1-211ENST00000600868 LCATP04180 440 aa12.39□□□□□ -0.43
UPF1-211ENST00000600868 ANXA2P07355 339 aaKnown RBP12.39□□□□□ -0.43
UPF1-211ENST00000600868 CD3EP07766 207 aa12.39□□□□□ -0.43
UPF1-211ENST00000600868 RPSAP08865 295 aaKnown RBP12.39□□□□□ -0.43
UPF1-211ENST00000600868 SMIM18P0DKX4 95 aa12.39□□□□□ -0.43
UPF1-211ENST00000600868 SLC2A1P11166 492 aa12.39□□□□□ -0.43
UPF1-211ENST00000600868 NR4A1P22736 598 aa12.39□□□□□ -0.43
UPF1-211ENST00000600868 TUBG1P23258 451 aa12.39□□□□□ -0.43
UPF1-211ENST00000600868 RAD52P43351 418 aa12.39□□□□□ -0.43
UPF1-211ENST00000600868 CCR9P51686 369 aa12.39□□□□□ -0.43
UPF1-211ENST00000600868 UCP2P55851 309 aa12.39□□□□□ -0.43
UPF1-211ENST00000600868 TAS2R43P59537 309 aa12.39□□□□□ -0.43
UPF1-211ENST00000600868 SPOCK1Q08629 439 aa12.39□□□□□ -0.43
UPF1-211ENST00000600868 ALKBH1Q13686 389 aaKnown RBP12.39□□□□□ -0.43
UPF1-211ENST00000600868 DOC2BQ14184 412 aa12.39□□□□□ -0.43
UPF1-211ENST00000600868 MED22Q15528 200 aa12.39□□□□□ -0.43
UPF1-211ENST00000600868 UBE2UQ5VVX9 321 aa12.39□□□□□ -0.43
UPF1-211ENST00000600868 XAF1Q6GPH4 301 aa12.39□□□□□ -0.43
UPF1-211ENST00000600868 RPL22L1Q6P5R6 122 aaKnown RBP12.39□□□□□ -0.43
UPF1-211ENST00000600868 FAM57BQ71RH2 274 aa12.39□□□□□ -0.43
UPF1-211ENST00000600868 ZNF101Q8IZC7 436 aa12.39□□□□□ -0.43
UPF1-211ENST00000600868 OR5L1Q8NGL2 311 aa12.39□□□□□ -0.43
UPF1-211ENST00000600868 OR2G2Q8NGZ5 317 aa12.39□□□□□ -0.43
UPF1-211ENST00000600868 RPS4Y2Q8TD47 263 aa12.39□□□□□ -0.43
UPF1-211ENST00000600868 COG8Q96MW5 612 aa12.39□□□□□ -0.43
UPF1-211ENST00000600868 PSMG3-AS1Q96PY0 264 aa12.39□□□□□ -0.43
UPF1-211ENST00000600868 BCL2L14Q9BZR8 327 aa12.39□□□□□ -0.43
UPF1-211ENST00000600868 PBOV1Q9GZY1 135 aa12.39□□□□□ -0.43
UPF1-211ENST00000600868 HEATR1Q9H583 2144 aaKnown RBP12.39□□□□□ -0.43
UPF1-211ENST00000600868 BRD7Q9NPI1 651 aa12.39□□□□□ -0.43
UPF1-211ENST00000600868 G6PC2Q9NQR9 355 aa12.39□□□□□ -0.43
UPF1-211ENST00000600868 TUBG2Q9NRH3 451 aa12.39□□□□□ -0.43
UPF1-211ENST00000600868 FRRS1LQ9P0K9 344 aa12.39□□□□□ -0.43
UPF1-211ENST00000600868 SPEF1Q9Y4P9 236 aa12.39□□□□□ -0.43
UPF1-211ENST00000600868 ATP6V1G2-DDX39BF2Z307 99 aa12.38□□□□□ -0.43
UPF1-211ENST00000600868 NGFP01138 241 aa12.38□□□□□ -0.43
UPF1-211ENST00000600868 LCKP06239 509 aa12.38□□□□□ -0.43
UPF1-211ENST00000600868 ATP6V1B1P15313 513 aa12.38□□□□□ -0.43
UPF1-211ENST00000600868 GTF2A1P52655 376 aaPredicted RBP12.38□□□□□ -0.43
UPF1-211ENST00000600868 NANOS3P60323 173 aaKnown RBP12.38□□□□□ -0.43
UPF1-211ENST00000600868 NKX6-1P78426 367 aaPredicted RBP12.38□□□□□ -0.43
UPF1-211ENST00000600868 SNAI3Q3KNW1 292 aa12.38□□□□□ -0.43
UPF1-211ENST00000600868 WDR38Q5JTN6 314 aa12.38□□□□□ -0.43
UPF1-211ENST00000600868 BCL2L15Q5TBC7 163 aa12.38□□□□□ -0.43
UPF1-211ENST00000600868 SP5Q6BEB4 398 aaPredicted RBP12.38□□□□□ -0.43
UPF1-211ENST00000600868 KCTD8Q6ZWB6 473 aa12.38□□□□□ -0.43
UPF1-211ENST00000600868 ELMOD2Q8IZ81 293 aa12.38□□□□□ -0.43
UPF1-211ENST00000600868 PIAS4Q8N2W9 510 aaPredicted RBP12.38□□□□□ -0.43
UPF1-211ENST00000600868 PRSS35Q8N3Z0 413 aa12.38□□□□□ -0.43
UPF1-211ENST00000600868 NUP37Q8NFH4 326 aa12.38□□□□□ -0.43
UPF1-211ENST00000600868 ABHD4Q8TB40 342 aa12.38□□□□□ -0.43
UPF1-211ENST00000600868 PGAM5Q96HS1 289 aa12.38□□□□□ -0.43
UPF1-211ENST00000600868 TMEM204Q9BSN7 226 aa12.38□□□□□ -0.43
UPF1-211ENST00000600868 OR10A2Q9H208 303 aa12.38□□□□□ -0.43
UPF1-211ENST00000600868 VCX3AQ9NNX9 186 aa12.38□□□□□ -0.43
UPF1-211ENST00000600868 ZNF319Q9P2F9 582 aa12.38□□□□□ -0.43
UPF1-211ENST00000600868 ST6GALNAC2Q9UJ37 374 aa12.38□□□□□ -0.43
UPF1-211ENST00000600868 STARD10Q9Y365 291 aa12.38□□□□□ -0.43
UPF1-211ENST00000600868 RNF115Q9Y4L5 304 aa12.38□□□□□ -0.43
UPF1-211ENST00000600868 A0A0U1RQV5 110 aa12.37□□□□□ -0.43
UPF1-211ENST00000600868 OR4C45A6NMZ5 311 aa12.37□□□□□ -0.43
UPF1-211ENST00000600868 A6NNC1 897 aa12.37□□□□□ -0.43
UPF1-211ENST00000600868 SHISA9B4DS77 424 aa12.37□□□□□ -0.43
UPF1-211ENST00000600868 FAM157BP0CG42 384 aa12.37□□□□□ -0.43
UPF1-211ENST00000600868 JUNBP17275 347 aaPredicted RBP12.37□□□□□ -0.43
UPF1-211ENST00000600868 GLRXP35754 106 aa12.37□□□□□ -0.43
UPF1-211ENST00000600868 KIR3DL2P43630 455 aa12.37□□□□□ -0.43
UPF1-211ENST00000600868 PPP1CBP62140 327 aa12.37□□□□□ -0.43
UPF1-211ENST00000600868 MLLT11Q13015 90 aaPredicted RBP12.37□□□□□ -0.43
UPF1-211ENST00000600868 GPR50Q13585 617 aa12.37□□□□□ -0.43
UPF1-211ENST00000600868 CDK5R1Q15078 307 aa12.37□□□□□ -0.43
UPF1-211ENST00000600868 DMKNQ6E0U4 476 aaPredicted RBP12.37□□□□□ -0.43
UPF1-211ENST00000600868 SLC22A25Q6T423 547 aa12.37□□□□□ -0.43
UPF1-211ENST00000600868 ZNF704Q6ZNC4 412 aaPredicted RBP12.37□□□□□ -0.43
UPF1-211ENST00000600868 RFPL4BQ6ZWI9 263 aa12.37□□□□□ -0.43
UPF1-211ENST00000600868 OR8B12Q8NGG6 310 aa12.37□□□□□ -0.43
UPF1-211ENST00000600868 PIK3IP1Q96FE7 263 aa12.37□□□□□ -0.43
UPF1-211ENST00000600868 MGLLQ99685 303 aa12.37□□□□□ -0.43
UPF1-211ENST00000600868 MRPS26Q9BYN8 205 aaKnown RBP12.37□□□□□ -0.43
UPF1-211ENST00000600868 RGCCQ9H4X1 137 aa12.37□□□□□ -0.43
UPF1-211ENST00000600868 ZNF391Q9UJN7 358 aa12.37□□□□□ -0.43
UPF1-211ENST00000600868 GTF2A1LQ9UNN4 478 aa12.37□□□□□ -0.43
UPF1-211ENST00000600868 SLC22A13Q9Y226 551 aa12.37□□□□□ -0.43
UPF1-211ENST00000600868 N6AMT1Q9Y5N5 214 aa12.37□□□□□ -0.43
UPF1-211ENST00000600868 SIRT4Q9Y6E7 314 aaPredicted RBP12.37□□□□□ -0.43
UPF1-211ENST00000600868 CADP27708 2225 aa12.36□□□□□ -0.43
UPF1-211ENST00000600868 TRBV2A0A0J9YWF9 115 aa12.36□□□□□ -0.43
UPF1-211ENST00000600868 C5orf63A6NC05 138 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms