RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 DCTDP32321 178 aa16.58■□□□□ 0.24
UPF1-209ENST00000600310 MPV17P39210 176 aa16.58■□□□□ 0.24
UPF1-209ENST00000600310 HSPA13P48723 471 aa16.58■□□□□ 0.24
UPF1-209ENST00000600310 CX3CR1P49238 355 aa16.58■□□□□ 0.24
UPF1-209ENST00000600310 KLF3P57682 345 aaPredicted RBP16.58■□□□□ 0.24
UPF1-209ENST00000600310 CDK5R2Q13319 367 aa16.58■□□□□ 0.24
UPF1-209ENST00000600310 SMN1Q16637 294 aaKnown RBP16.58■□□□□ 0.24
UPF1-209ENST00000600310 PRSS45Q7RTY3 260 aa16.58■□□□□ 0.24
UPF1-209ENST00000600310 THAP5Q7Z6K1 395 aa16.58■□□□□ 0.24
UPF1-209ENST00000600310 LGALS12Q96DT0 336 aa16.58■□□□□ 0.24
UPF1-209ENST00000600310 TBX5Q99593 518 aa16.58■□□□□ 0.24
UPF1-209ENST00000600310 GSX2Q9BZM3 304 aa16.58■□□□□ 0.24
UPF1-209ENST00000600310 MYEF2Q9P2K5 600 aaKnown RBP16.58■□□□□ 0.24
UPF1-209ENST00000600310 LRP12Q9Y561 859 aa16.58■□□□□ 0.24
UPF1-209ENST00000600310 PMF1-BGLAPU3KQ54 211 aa16.58■□□□□ 0.24
UPF1-209ENST00000600310 H7C417 338 aa16.57■□□□□ 0.24
UPF1-209ENST00000600310 PSMD9O00233 223 aa16.57■□□□□ 0.24
UPF1-209ENST00000600310 SLC2A1P11166 492 aa16.57■□□□□ 0.24
UPF1-209ENST00000600310 CDKN1AP38936 164 aa16.57■□□□□ 0.24
UPF1-209ENST00000600310 ZNF121P58317 390 aaPredicted RBP16.57■□□□□ 0.24
UPF1-209ENST00000600310 ACTC1P68032 377 aa16.57■□□□□ 0.24
UPF1-209ENST00000600310 ACTA1P68133 377 aa16.57■□□□□ 0.24
UPF1-209ENST00000600310 SNAI3Q3KNW1 292 aa16.57■□□□□ 0.24
UPF1-209ENST00000600310 FBXW12Q6X9E4 464 aa16.57■□□□□ 0.24
UPF1-209ENST00000600310 SSX6Q7RTT6 188 aa16.57■□□□□ 0.24
UPF1-209ENST00000600310 TTTY10Q9BZA0 68 aa16.57■□□□□ 0.24
UPF1-209ENST00000600310 SP140LQ9H930 580 aa16.57■□□□□ 0.24
UPF1-209ENST00000600310 PTTG3PQ9NZH4 202 aa16.57■□□□□ 0.24
UPF1-209ENST00000600310 IKZF2Q9UKS7 526 aa16.57■□□□□ 0.24
UPF1-209ENST00000600310 A0A1W2PPW3 197 aa16.56■□□□□ 0.24
UPF1-209ENST00000600310 M0R233 179 aa16.56■□□□□ 0.24
UPF1-209ENST00000600310 RAC2P15153 192 aa16.56■□□□□ 0.24
UPF1-209ENST00000600310 PTH2RP49190 550 aa16.56■□□□□ 0.24
UPF1-209ENST00000600310 PPOXP50336 477 aa16.56■□□□□ 0.24
UPF1-209ENST00000600310 RIDAP52758 137 aaKnown RBP16.56■□□□□ 0.24
UPF1-209ENST00000600310 PSMA6P60900 246 aaKnown RBP16.56■□□□□ 0.24
UPF1-209ENST00000600310 ZNF85Q03923 595 aa16.56■□□□□ 0.24
UPF1-209ENST00000600310 RAB40BQ12829 278 aa16.56■□□□□ 0.24
UPF1-209ENST00000600310 MALLQ13021 153 aa16.56■□□□□ 0.24
UPF1-209ENST00000600310 PSG7Q13046 419 aa16.56■□□□□ 0.24
UPF1-209ENST00000600310 MOGQ16653 247 aa16.56■□□□□ 0.24
UPF1-209ENST00000600310 TMEM255AQ5JRV8 349 aa16.56■□□□□ 0.24
UPF1-209ENST00000600310 LRRC75A-AS1Q8N1F1 130 aa16.56■□□□□ 0.24
UPF1-209ENST00000600310 ACBD7Q8N6N7 88 aa16.56■□□□□ 0.24
UPF1-209ENST00000600310 HAVCR1Q96D42 359 aa16.56■□□□□ 0.24
UPF1-209ENST00000600310 CMBLQ96DG6 245 aa16.56■□□□□ 0.24
UPF1-209ENST00000600310 TRMT61AQ96FX7 289 aaKnown RBP16.56■□□□□ 0.24
UPF1-209ENST00000600310 FOXC2Q99958 501 aa16.56■□□□□ 0.24
UPF1-209ENST00000600310 TAAR3PQ9P1P4 343 aa16.56■□□□□ 0.24
UPF1-209ENST00000600310 MRM2Q9UI43 246 aaKnown RBP16.56■□□□□ 0.24
UPF1-209ENST00000600310 GPR160Q9UJ42 338 aa16.56■□□□□ 0.24
UPF1-209ENST00000600310 HRNRQ86YZ3 2850 aaPredicted RBP16.56■□□□□ 0.24
UPF1-209ENST00000600310 APCP25054 2843 aa16.56■□□□□ 0.24
UPF1-209ENST00000600310 C5orf63A6NC05 138 aa16.55■□□□□ 0.24
UPF1-209ENST00000600310 MAGEB4O15481 346 aaPredicted RBP16.55■□□□□ 0.24
UPF1-209ENST00000600310 SULT1C4O75897 302 aa16.55■□□□□ 0.24
UPF1-209ENST00000600310 FADS2O95864 444 aaKnown RBP16.55■□□□□ 0.24
UPF1-209ENST00000600310 ANXA2P07355 339 aaKnown RBP16.55■□□□□ 0.24
UPF1-209ENST00000600310 KITLGP21583 273 aa16.55■□□□□ 0.24
UPF1-209ENST00000600310 ANOS1P23352 680 aa16.55■□□□□ 0.24
UPF1-209ENST00000600310 ALDH3B1P43353 468 aa16.55■□□□□ 0.24
UPF1-209ENST00000600310 KLHL22Q53GT1 634 aa16.55■□□□□ 0.24
UPF1-209ENST00000600310 ZNF684Q5T5D7 378 aa16.55■□□□□ 0.24
UPF1-209ENST00000600310 LAIR2Q6ISS4 152 aa16.55■□□□□ 0.24
UPF1-209ENST00000600310 FAM57BQ71RH2 274 aa16.55■□□□□ 0.24
UPF1-209ENST00000600310 OR52H1Q8NGJ2 320 aa16.55■□□□□ 0.24
UPF1-209ENST00000600310 OR52I1Q8NGK6 324 aa16.55■□□□□ 0.24
UPF1-209ENST00000600310 MS4A5Q9H3V2 200 aa16.55■□□□□ 0.24
UPF1-209ENST00000600310 DYNLRB1Q9NP97 96 aa16.55■□□□□ 0.24
UPF1-209ENST00000600310 PURGQ9UJV8 347 aaKnown RBP16.55■□□□□ 0.24
UPF1-209ENST00000600310 ACOD1A6NK06 481 aa16.54■□□□□ 0.24
UPF1-209ENST00000600310 IGHA1P01876 353 aa16.54■□□□□ 0.24
UPF1-209ENST00000600310 KRT8P05787 483 aa16.54■□□□□ 0.24
UPF1-209ENST00000600310 ADRA2AP08913 450 aa16.54■□□□□ 0.24
UPF1-209ENST00000600310 GK2Q14410 553 aaPredicted RBP16.54■□□□□ 0.24
UPF1-209ENST00000600310 HLXQ14774 488 aaPredicted RBP16.54■□□□□ 0.24
UPF1-209ENST00000600310 NKPD1Q17RQ9 610 aa16.54■□□□□ 0.24
UPF1-209ENST00000600310 GLYATL3Q5SZD4 288 aa16.54■□□□□ 0.24
UPF1-209ENST00000600310 SNX33Q8WV41 574 aa16.54■□□□□ 0.24
UPF1-209ENST00000600310 ANKRD60Q9BZ19 345 aa16.54■□□□□ 0.24
UPF1-209ENST00000600310 RASSF4Q9H2L5 321 aa16.54■□□□□ 0.24
UPF1-209ENST00000600310 FGF20Q9NP95 211 aaPredicted RBP16.54■□□□□ 0.24
UPF1-209ENST00000600310 BRD7Q9NPI1 651 aa16.54■□□□□ 0.24
UPF1-209ENST00000600310 ZNF319Q9P2F9 582 aa16.54■□□□□ 0.24
UPF1-209ENST00000600310 MYRFQ9Y2G1 1151 aa16.54■□□□□ 0.24
UPF1-209ENST00000600310 N6AMT1Q9Y5N5 214 aa16.54■□□□□ 0.24
UPF1-209ENST00000600310 TMEM269A0A1B0GVZ9 245 aa16.53■□□□□ 0.24
UPF1-209ENST00000600310 DAPL1A0PJW8 107 aa16.53■□□□□ 0.24
UPF1-209ENST00000600310 IRGMA1A4Y4 181 aa16.53■□□□□ 0.24
UPF1-209ENST00000600310 METTL15A6NJ78 407 aa16.53■□□□□ 0.24
UPF1-209ENST00000600310 XRCC2O43543 280 aa16.53■□□□□ 0.24
UPF1-209ENST00000600310 MYF6P23409 242 aa16.53■□□□□ 0.24
UPF1-209ENST00000600310 LIPAP38571 399 aa16.53■□□□□ 0.24
UPF1-209ENST00000600310 MMP16P51512 607 aa16.53■□□□□ 0.24
UPF1-209ENST00000600310 ATP5J2P56134 94 aa16.53■□□□□ 0.24
UPF1-209ENST00000600310 ZNF92Q03936 586 aa16.53■□□□□ 0.24
UPF1-209ENST00000600310 ZNF829Q3KNS6 432 aaPredicted RBP16.53■□□□□ 0.24
UPF1-209ENST00000600310 ALKBH6Q3KRA9 238 aa16.53■□□□□ 0.24
UPF1-209ENST00000600310 PLEKHG7Q6ZR37 379 aa16.53■□□□□ 0.24
UPF1-209ENST00000600310 SPSB4Q96A44 273 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms