RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 LRRC75AQ8NAA5 344 aa8.31□□□□□ -1.08
TRIM28-210ENST00000597618 PLPP7Q8NBV4 271 aa8.31□□□□□ -1.08
TRIM28-210ENST00000597618 ST8SIA4Q92187 359 aa8.31□□□□□ -1.08
TRIM28-210ENST00000597618 BPIFA2Q96DR5 249 aa8.31□□□□□ -1.08
TRIM28-210ENST00000597618 CLPTM1LQ96KA5 538 aa8.31□□□□□ -1.08
TRIM28-210ENST00000597618 DMRTB1Q96MA1 342 aa8.31□□□□□ -1.08
TRIM28-210ENST00000597618 COQ7Q99807 217 aa8.31□□□□□ -1.08
TRIM28-210ENST00000597618 SLC22A4Q9H015 551 aa8.31□□□□□ -1.08
TRIM28-210ENST00000597618 HDHD2Q9H0R4 259 aa8.31□□□□□ -1.08
TRIM28-210ENST00000597618 CENPHQ9H3R5 247 aa8.31□□□□□ -1.08
TRIM28-210ENST00000597618 WDR76Q9H967 626 aa8.31□□□□□ -1.08
TRIM28-210ENST00000597618 GRHPRQ9UBQ7 328 aa8.31□□□□□ -1.08
TRIM28-210ENST00000597618 SH3GLB1Q9Y371 365 aa8.31□□□□□ -1.08
TRIM28-210ENST00000597618 TRAV27A0A087WT01 109 aa8.3□□□□□ -1.08
TRIM28-210ENST00000597618 PRSS37A4D1T9 235 aa8.3□□□□□ -1.08
TRIM28-210ENST00000597618 RER1O15258 196 aa8.3□□□□□ -1.08
TRIM28-210ENST00000597618 FBXO24O75426 580 aa8.3□□□□□ -1.08
TRIM28-210ENST00000597618 PTBP3O95758 552 aaKnown RBP8.3□□□□□ -1.08
TRIM28-210ENST00000597618 GYPAP02724 150 aa8.3□□□□□ -1.08
TRIM28-210ENST00000597618 IFI30P13284 250 aa8.3□□□□□ -1.08
TRIM28-210ENST00000597618 CTLA4P16410 223 aa8.3□□□□□ -1.08
TRIM28-210ENST00000597618 SAA4P35542 130 aa8.3□□□□□ -1.08
TRIM28-210ENST00000597618 CRYBA2P53672 197 aa8.3□□□□□ -1.08
TRIM28-210ENST00000597618 WDR4P57081 412 aaKnown RBP8.3□□□□□ -1.08
TRIM28-210ENST00000597618 MTPNP58546 118 aa8.3□□□□□ -1.08
TRIM28-210ENST00000597618 PIN1Q13526 163 aaPredicted RBP8.3□□□□□ -1.08
TRIM28-210ENST00000597618 GK2Q14410 553 aaPredicted RBP8.3□□□□□ -1.08
TRIM28-210ENST00000597618 OR8G1Q15617 311 aa8.3□□□□□ -1.08
TRIM28-210ENST00000597618 NSUN5P1Q3KNT7 163 aa8.3□□□□□ -1.08
TRIM28-210ENST00000597618 EPGNQ6UW88 154 aa8.3□□□□□ -1.08
TRIM28-210ENST00000597618 COLCA1Q6ZS62 124 aa8.3□□□□□ -1.08
TRIM28-210ENST00000597618 DHDDSQ86SQ9 333 aa8.3□□□□□ -1.08
TRIM28-210ENST00000597618 FAM90A1Q86YD7 464 aa8.3□□□□□ -1.08
TRIM28-210ENST00000597618 GLB1L2Q8IW92 636 aa8.3□□□□□ -1.08
TRIM28-210ENST00000597618 OR51A7Q8NH64 312 aa8.3□□□□□ -1.08
TRIM28-210ENST00000597618 PPP1R35Q8TAP8 253 aa8.3□□□□□ -1.08
TRIM28-210ENST00000597618 SPRYD4Q8WW59 207 aaPredicted RBP8.3□□□□□ -1.08
TRIM28-210ENST00000597618 R3HDM4Q96D70 268 aa8.3□□□□□ -1.08
TRIM28-210ENST00000597618 ITPKCQ96DU7 683 aa8.3□□□□□ -1.08
TRIM28-210ENST00000597618 ADAT1Q9BUB4 502 aaKnown RBP8.3□□□□□ -1.08
TRIM28-210ENST00000597618 RAB18Q9NP72 206 aa8.3□□□□□ -1.08
TRIM28-210ENST00000597618 SIRT7Q9NRC8 400 aa8.3□□□□□ -1.08
TRIM28-210ENST00000597618 KAAG1Q9UBP8 84 aa8.3□□□□□ -1.08
TRIM28-210ENST00000597618 BAG5Q9UL15 447 aa8.3□□□□□ -1.08
TRIM28-210ENST00000597618 AURKCQ9UQB9 309 aa8.3□□□□□ -1.08
TRIM28-210ENST00000597618 POLR1DQ9Y2S0 133 aa8.3□□□□□ -1.08
TRIM28-210ENST00000597618 MAB21L2Q9Y586 359 aa8.3□□□□□ -1.08
TRIM28-210ENST00000597618 BIRC6Q9NR09 4857 aa8.3□□□□□ -1.08
TRIM28-210ENST00000597618 RYR2Q92736 4967 aa8.3□□□□□ -1.08
TRIM28-210ENST00000597618 MEIOCA2RUB1 952 aa8.29□□□□□ -1.08
TRIM28-210ENST00000597618 H3BUX3 64 aa8.29□□□□□ -1.08
TRIM28-210ENST00000597618 K7EIL1 84 aa8.29□□□□□ -1.08
TRIM28-210ENST00000597618 FCN3O75636 299 aa8.29□□□□□ -1.08
TRIM28-210ENST00000597618 VSIG10L2P0DP72 767 aa8.29□□□□□ -1.08
TRIM28-210ENST00000597618 TNFRSF1BP20333 461 aa8.29□□□□□ -1.08
TRIM28-210ENST00000597618 RPL4P36578 427 aaKnown RBP8.29□□□□□ -1.08
TRIM28-210ENST00000597618 PRSS12P56730 875 aa8.29□□□□□ -1.08
TRIM28-210ENST00000597618 MALLQ13021 153 aa8.29□□□□□ -1.08
TRIM28-210ENST00000597618 SELPLGQ14242 412 aa8.29□□□□□ -1.08
TRIM28-210ENST00000597618 AGKQ53H12 422 aa8.29□□□□□ -1.08
TRIM28-210ENST00000597618 MESTQ5EB52 335 aa8.29□□□□□ -1.08
TRIM28-210ENST00000597618 TNFAIP8L3Q5GJ75 292 aa8.29□□□□□ -1.08
TRIM28-210ENST00000597618 OTPQ5XKR4 325 aa8.29□□□□□ -1.08
TRIM28-210ENST00000597618 PGAP1Q75T13 922 aa8.29□□□□□ -1.08
TRIM28-210ENST00000597618 CCDC80Q76M96 950 aa8.29□□□□□ -1.08
TRIM28-210ENST00000597618 OAFQ86UD1 273 aa8.29□□□□□ -1.08
TRIM28-210ENST00000597618 NDUFA11Q86Y39 141 aa8.29□□□□□ -1.08
TRIM28-210ENST00000597618 MICU2Q8IYU8 434 aa8.29□□□□□ -1.08
TRIM28-210ENST00000597618 LYG1Q8N1E2 194 aa8.29□□□□□ -1.08
TRIM28-210ENST00000597618 MREGQ8N565 214 aa8.29□□□□□ -1.08
TRIM28-210ENST00000597618 FAM156AQ8NDB6 213 aa8.29□□□□□ -1.08
TRIM28-210ENST00000597618 LY6G5BQ8NDX9 201 aa8.29□□□□□ -1.08
TRIM28-210ENST00000597618 BEND2Q8NDZ0 799 aa8.29□□□□□ -1.08
TRIM28-210ENST00000597618 GJC3Q8NFK1 279 aa8.29□□□□□ -1.08
TRIM28-210ENST00000597618 ZNF570Q96NI8 536 aa8.29□□□□□ -1.08
TRIM28-210ENST00000597618 CGREF1Q99674 301 aa8.29□□□□□ -1.08
TRIM28-210ENST00000597618 OCSTAMPQ9BR26 566 aa8.29□□□□□ -1.08
TRIM28-210ENST00000597618 NDEL1Q9GZM8 345 aa8.29□□□□□ -1.08
TRIM28-210ENST00000597618 NPFFR1Q9GZQ6 430 aa8.29□□□□□ -1.08
TRIM28-210ENST00000597618 FAM234AQ9H0X4 552 aa8.29□□□□□ -1.08
TRIM28-210ENST00000597618 MMP28Q9H239 520 aa8.29□□□□□ -1.08
TRIM28-210ENST00000597618 KAT8Q9H7Z6 458 aaKnown RBP8.29□□□□□ -1.08
TRIM28-210ENST00000597618 C1orf123Q9NWV4 160 aa8.29□□□□□ -1.08
TRIM28-210ENST00000597618 ADAM18Q9Y3Q7 739 aa8.29□□□□□ -1.08
TRIM28-210ENST00000597618 EPPK1P58107 5090 aaKnown RBP8.29□□□□□ -1.08
TRIM28-210ENST00000597618 LOC100653049A0A140TA62 436 aa8.28□□□□□ -1.08
TRIM28-210ENST00000597618 A0A1W2PRD5 423 aa8.28□□□□□ -1.08
TRIM28-210ENST00000597618 A0A1W2PRF3 423 aa8.28□□□□□ -1.08
TRIM28-210ENST00000597618 A0A1W2PRM7 423 aa8.28□□□□□ -1.08
TRIM28-210ENST00000597618 TMEM120BA0PK00 339 aa8.28□□□□□ -1.08
TRIM28-210ENST00000597618 EFCAB9A8MZ26 197 aa8.28□□□□□ -1.08
TRIM28-210ENST00000597618 GMDSO60547 372 aa8.28□□□□□ -1.08
TRIM28-210ENST00000597618 SLC16A7O60669 478 aa8.28□□□□□ -1.08
TRIM28-210ENST00000597618 SHOX2O60902 331 aaPredicted RBP8.28□□□□□ -1.08
TRIM28-210ENST00000597618 KHDRBS3O75525 346 aaKnown RBP8.28□□□□□ -1.08
TRIM28-210ENST00000597618 KRT34O76011 436 aa8.28□□□□□ -1.08
TRIM28-210ENST00000597618 CD14P08571 375 aa8.28□□□□□ -1.08
TRIM28-210ENST00000597618 CA6P23280 308 aa8.28□□□□□ -1.08
TRIM28-210ENST00000597618 IFNA8P32881 189 aa8.28□□□□□ -1.08
TRIM28-210ENST00000597618 SLC9A3P48764 834 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 114.7 ms