RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 OR1M1Q8NGA1 313 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 OR51D1Q8NGF3 324 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 OR1J2Q8NGS2 313 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 ZNF775Q96BV0 537 aaPredicted RBP12.48□□□□□ -0.41
LIG3-205ENST00000585941 FOXB1Q99853 325 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 UQCC2Q9BRT2 126 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 PRRG4Q9BZD6 226 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 SLCO5A1Q9H2Y9 848 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 GPR35Q9HC97 309 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 PLEK2Q9NYT0 353 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 COPZ2Q9P299 210 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 SLC5A6Q9Y289 635 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 A0A0A6YYH2 397 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 MEIOCA2RUB1 952 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 A6NJ64 397 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 SGCEO43556 437 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 LANCL1O43813 399 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 KRT33AO76009 404 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 ADRB1P08588 477 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 GSTT2BP0CG30 244 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 FAM157BP0CG42 384 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 CPN1P15169 458 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 ARSBP15848 533 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 SLC6A1P30531 599 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 NTF4P34130 210 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 GALK2Q01415 458 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 SRYQ05066 204 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 GPR176Q14439 515 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 ZNF813Q6ZN06 617 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 FAM57BQ71RH2 274 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 PRSS45Q7RTY3 260 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 SLC22A24Q8N4F4 322 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 DEDD2Q8WXF8 326 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 SLC25A28Q96A46 364 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 CREB3L1Q96BA8 519 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 FBXO17Q96EF6 278 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 PGAM5Q96HS1 289 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 MARVELD1Q9BSK0 173 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 MMP28Q9H239 520 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 BCO1Q9HAY6 547 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 GPR84Q9NQS5 396 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 PROB1E7EW31 1015 aa12.47□□□□□ -0.41
LIG3-205ENST00000585941 BOLA2-SMG1P6H3BVE0 249 aa12.47□□□□□ -0.41
LIG3-205ENST00000585941 TFECO14948 347 aaPredicted RBP12.47□□□□□ -0.41
LIG3-205ENST00000585941 ORC5O43913 435 aa12.47□□□□□ -0.41
LIG3-205ENST00000585941 DOK2O60496 412 aa12.47□□□□□ -0.41
LIG3-205ENST00000585941 FARS2O95363 451 aaKnown RBP12.47□□□□□ -0.41
LIG3-205ENST00000585941 CD3GP09693 182 aa12.47□□□□□ -0.41
LIG3-205ENST00000585941 CCL11P51671 97 aa12.47□□□□□ -0.41
LIG3-205ENST00000585941 TAS2R20P59543 309 aa12.47□□□□□ -0.41
LIG3-205ENST00000585941 SPOCK1Q08629 439 aa12.47□□□□□ -0.41
LIG3-205ENST00000585941 RSBN1Q5VWQ0 802 aaPredicted RBP12.47□□□□□ -0.41
LIG3-205ENST00000585941 DRAM2Q6UX65 266 aa12.47□□□□□ -0.41
LIG3-205ENST00000585941 UBE2J2Q8N2K1 259 aa12.47□□□□□ -0.41
LIG3-205ENST00000585941 JAGN1Q8N5M9 183 aa12.47□□□□□ -0.41
LIG3-205ENST00000585941 OR52H1Q8NGJ2 320 aa12.47□□□□□ -0.41
LIG3-205ENST00000585941 HPS1Q92902 700 aa12.47□□□□□ -0.41
LIG3-205ENST00000585941 C10orf35Q96D05 121 aa12.47□□□□□ -0.41
LIG3-205ENST00000585941 ADAT3Q96EY9 351 aaPredicted RBP12.47□□□□□ -0.41
LIG3-205ENST00000585941 LDAHQ9H6V9 325 aa12.47□□□□□ -0.41
LIG3-205ENST00000585941 EXO5Q9H790 373 aa12.47□□□□□ -0.41
LIG3-205ENST00000585941 METTL17Q9H7H0 456 aaPredicted RBP12.47□□□□□ -0.41
LIG3-205ENST00000585941 ZDHHC11Q9H8X9 412 aa12.47□□□□□ -0.41
LIG3-205ENST00000585941 RBMX2Q9Y388 322 aaKnown RBP12.47□□□□□ -0.41
LIG3-205ENST00000585941 TIMM10BQ9Y5J6 103 aa12.47□□□□□ -0.41
LIG3-205ENST00000585941 DNAJC13O75165 2243 aa12.47□□□□□ -0.41
LIG3-205ENST00000585941 RIF1Q5UIP0 2472 aaKnown RBP12.47□□□□□ -0.41
LIG3-205ENST00000585941 TRGV5A0A0B4J1U4 118 aa12.46□□□□□ -0.41
LIG3-205ENST00000585941 DCDC2BA2VCK2 349 aa12.46□□□□□ -0.41
LIG3-205ENST00000585941 NAP1L6A6NFF2 107 aa12.46□□□□□ -0.41
LIG3-205ENST00000585941 GGT3PA6NGU5 568 aa12.46□□□□□ -0.41
LIG3-205ENST00000585941 M0R135 149 aa12.46□□□□□ -0.41
LIG3-205ENST00000585941 CTAG2O75638 210 aa12.46□□□□□ -0.41
LIG3-205ENST00000585941 IGLV3-1P01715 115 aa12.46□□□□□ -0.41
LIG3-205ENST00000585941 GABRA1P14867 456 aa12.46□□□□□ -0.41
LIG3-205ENST00000585941 RAB6AP20340 208 aa12.46□□□□□ -0.41
LIG3-205ENST00000585941 GDNFP39905 211 aa12.46□□□□□ -0.41
LIG3-205ENST00000585941 SLC6A9P48067 706 aa12.46□□□□□ -0.41
LIG3-205ENST00000585941 TPTEP56180 551 aa12.46□□□□□ -0.41
LIG3-205ENST00000585941 BTG1P62324 171 aa12.46□□□□□ -0.41
LIG3-205ENST00000585941 CEACAM16Q2WEN9 425 aa12.46□□□□□ -0.41
LIG3-205ENST00000585941 Q6ZSR3 168 aa12.46□□□□□ -0.41
LIG3-205ENST00000585941 ADGRE4PQ86SQ3 457 aa12.46□□□□□ -0.41
LIG3-205ENST00000585941 LYPD6Q86Y78 171 aa12.46□□□□□ -0.41
LIG3-205ENST00000585941 IZUMO1Q8IYV9 350 aa12.46□□□□□ -0.41
LIG3-205ENST00000585941 OR51A2Q8NGJ7 313 aa12.46□□□□□ -0.41
LIG3-205ENST00000585941 ZNF837Q96EG3 531 aaPredicted RBP12.46□□□□□ -0.41
LIG3-205ENST00000585941 ZNF799Q96GE5 643 aa12.46□□□□□ -0.41
LIG3-205ENST00000585941 ALKBH3Q96Q83 286 aaPredicted RBP12.46□□□□□ -0.41
LIG3-205ENST00000585941 DPAGT1Q9H3H5 408 aa12.46□□□□□ -0.41
LIG3-205ENST00000585941 GP6Q9HCN6 339 aa12.46□□□□□ -0.41
LIG3-205ENST00000585941 NLKQ9UBE8 527 aa12.46□□□□□ -0.41
LIG3-205ENST00000585941 MUC6Q6W4X9 2439 aa12.46□□□□□ -0.42
LIG3-205ENST00000585941 ZNF407Q9C0G0 2248 aa12.46□□□□□ -0.42
LIG3-205ENST00000585941 TRAV17A0A0B4J275 112 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 TMEM272A0A1B0GTI8 110 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 F5H5K5 113 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 RPL36A-HNRNPH2H7BZ11 118 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 LMX1BO60663 402 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 MTRF1O75570 445 aaKnown RBP12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms