RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-222	ENST00000582792	IGHV2-70D	A0A0C4DH43	119 aa		11.36	□□□□□ -0.59
SS18-222	ENST00000582792		A0A1B0GUS0	222 aa		11.36	□□□□□ -0.59
SS18-222	ENST00000582792	TMEM178B	H3BS89	294 aa		11.36	□□□□□ -0.59
SS18-222	ENST00000582792	SURF4	O15260	269 aa		11.36	□□□□□ -0.59
SS18-222	ENST00000582792	E2F6	O75461	281 aa		11.36	□□□□□ -0.59
SS18-222	ENST00000582792	GAST	P01350	101 aa		11.36	□□□□□ -0.59
SS18-222	ENST00000582792	CD14	P08571	375 aa		11.36	□□□□□ -0.59
SS18-222	ENST00000582792	COX5B	P10606	129 aa		11.36	□□□□□ -0.59
SS18-222	ENST00000582792	ANXA8	P13928	327 aa		11.36	□□□□□ -0.59
SS18-222	ENST00000582792	GUCA1A	P43080	201 aa	Predicted RBP	11.36	□□□□□ -0.59
SS18-222	ENST00000582792	ERF	P50548	548 aa		11.36	□□□□□ -0.59
SS18-222	ENST00000582792	CTXN1	P60606	82 aa		11.36	□□□□□ -0.59
SS18-222	ENST00000582792	RPL27	P61353	136 aa	Known RBP	11.36	□□□□□ -0.59
SS18-222	ENST00000582792	TOP3A	Q13472	1001 aa	Predicted RBP	11.36	□□□□□ -0.59
SS18-222	ENST00000582792	ENDOG	Q14249	297 aa	Known RBP	11.36	□□□□□ -0.59
SS18-222	ENST00000582792	RFX4	Q33E94	735 aa		11.36	□□□□□ -0.59
SS18-222	ENST00000582792	SMARCD3	Q6STE5	483 aa		11.36	□□□□□ -0.59
SS18-222	ENST00000582792	BTNL3	Q6UXE8	466 aa		11.36	□□□□□ -0.59
SS18-222	ENST00000582792	LRRN1	Q6UXK5	716 aa		11.36	□□□□□ -0.59
SS18-222	ENST00000582792	DPY19L2P2	Q6ZN68	376 aa		11.36	□□□□□ -0.59
SS18-222	ENST00000582792	SYT9	Q86SS6	491 aa		11.36	□□□□□ -0.59
SS18-222	ENST00000582792	AQP11	Q8NBQ7	271 aa		11.36	□□□□□ -0.59
SS18-222	ENST00000582792	OR9Q2	Q8NGE9	314 aa		11.36	□□□□□ -0.59
SS18-222	ENST00000582792	OR51A7	Q8NH64	312 aa		11.36	□□□□□ -0.59
SS18-222	ENST00000582792	WFDC12	Q8WWY7	111 aa		11.36	□□□□□ -0.59
SS18-222	ENST00000582792	CENPN	Q96H22	339 aa	Predicted RBP	11.36	□□□□□ -0.59
SS18-222	ENST00000582792	OR2V2	Q96R30	315 aa		11.36	□□□□□ -0.59
SS18-222	ENST00000582792	SSBP3	Q9BWW4	388 aa	Predicted RBP	11.36	□□□□□ -0.59
SS18-222	ENST00000582792	OSBPL10	Q9BXB5	764 aa		11.36	□□□□□ -0.59
SS18-222	ENST00000582792	NRIP3	Q9NQ35	241 aa		11.36	□□□□□ -0.59
SS18-222	ENST00000582792		U3KQV3	271 aa		11.36	□□□□□ -0.59
SS18-222	ENST00000582792	MDFIC2	A0A1B0GVS7	189 aa		11.35	□□□□□ -0.59
SS18-222	ENST00000582792		A0A1W2PPL8	197 aa		11.35	□□□□□ -0.59
SS18-222	ENST00000582792		A6NIZ1	184 aa		11.35	□□□□□ -0.59
SS18-222	ENST00000582792	C12orf71	A8MTZ7	269 aa		11.35	□□□□□ -0.59
SS18-222	ENST00000582792		H3BNX3	289 aa		11.35	□□□□□ -0.59
SS18-222	ENST00000582792	IFNL4	K9M1U5	179 aa		11.35	□□□□□ -0.59
SS18-222	ENST00000582792	IMPA2	O14732	288 aa		11.35	□□□□□ -0.59
SS18-222	ENST00000582792	HOXA3	O43365	443 aa	Predicted RBP	11.35	□□□□□ -0.59
SS18-222	ENST00000582792	IDH3B	O43837	385 aa		11.35	□□□□□ -0.59
SS18-222	ENST00000582792	AHCYL1	O43865	530 aa		11.35	□□□□□ -0.59
SS18-222	ENST00000582792	TXNDC12	O95881	172 aa		11.35	□□□□□ -0.59
SS18-222	ENST00000582792	KNG1	P01042	644 aa		11.35	□□□□□ -0.59
SS18-222	ENST00000582792	ZNF26	P17031	533 aa	Predicted RBP	11.35	□□□□□ -0.59
SS18-222	ENST00000582792	MSR1	P21757	451 aa		11.35	□□□□□ -0.59
SS18-222	ENST00000582792	SLC6A6	P31641	620 aa		11.35	□□□□□ -0.59
SS18-222	ENST00000582792	MMP16	P51512	607 aa		11.35	□□□□□ -0.59
SS18-222	ENST00000582792	RAP1B	P61224	184 aa		11.35	□□□□□ -0.59
SS18-222	ENST00000582792	RAP1A	P62834	184 aa		11.35	□□□□□ -0.59
SS18-222	ENST00000582792	SRSF4	Q08170	494 aa	Known RBP	11.35	□□□□□ -0.59
SS18-222	ENST00000582792	ZNF362	Q5T0B9	420 aa	Predicted RBP	11.35	□□□□□ -0.59
SS18-222	ENST00000582792	GPR139	Q6DWJ6	353 aa		11.35	□□□□□ -0.59
SS18-222	ENST00000582792	ZNF620	Q6ZNG0	422 aa		11.35	□□□□□ -0.59
SS18-222	ENST00000582792	TMEM179B	Q7Z7N9	219 aa		11.35	□□□□□ -0.59
SS18-222	ENST00000582792	PYDC1	Q8WXC3	89 aa		11.35	□□□□□ -0.59
SS18-222	ENST00000582792	LRTOMT	Q8WZ04	291 aa		11.35	□□□□□ -0.59
SS18-222	ENST00000582792	DACT3	Q96B18	629 aa	Predicted RBP	11.35	□□□□□ -0.59
SS18-222	ENST00000582792	HAVCR1	Q96D42	359 aa		11.35	□□□□□ -0.59
SS18-222	ENST00000582792	CMBL	Q96DG6	245 aa		11.35	□□□□□ -0.59
SS18-222	ENST00000582792	WAC	Q9BTA9	647 aa		11.35	□□□□□ -0.59
SS18-222	ENST00000582792	PRDM13	Q9H4Q3	707 aa		11.35	□□□□□ -0.59
SS18-222	ENST00000582792	S100A14	Q9HCY8	104 aa		11.35	□□□□□ -0.59
SS18-222	ENST00000582792	GCM1	Q9NP62	436 aa		11.35	□□□□□ -0.59
SS18-222	ENST00000582792	IL20	Q9NYY1	176 aa		11.35	□□□□□ -0.59
SS18-222	ENST00000582792	PDP1	Q9P0J1	537 aa	Predicted RBP	11.35	□□□□□ -0.59
SS18-222	ENST00000582792	CDH10	Q9Y6N8	788 aa		11.35	□□□□□ -0.59
SS18-222	ENST00000582792	FAM181B	A6NEQ2	426 aa		11.34	□□□□□ -0.59
SS18-222	ENST00000582792	ARPC3	O15145	178 aa		11.34	□□□□□ -0.59
SS18-222	ENST00000582792	SCG5	P05408	212 aa		11.34	□□□□□ -0.59
SS18-222	ENST00000582792	RPS2	P15880	293 aa	Known RBP	11.34	□□□□□ -0.59
SS18-222	ENST00000582792	RPS6KA3	P51812	740 aa		11.34	□□□□□ -0.59
SS18-222	ENST00000582792	FXYD6P3	P58550	94 aa		11.34	□□□□□ -0.59
SS18-222	ENST00000582792	GNB2	P62879	340 aa		11.34	□□□□□ -0.59
SS18-222	ENST00000582792	PPP1R8	Q12972	351 aa	Known RBP	11.34	□□□□□ -0.59
SS18-222	ENST00000582792	DEFB112	Q30KQ8	113 aa		11.34	□□□□□ -0.59
SS18-222	ENST00000582792	C17orf107	Q6ZR85	190 aa		11.34	□□□□□ -0.59
SS18-222	ENST00000582792	FAM122B	Q7Z309	247 aa		11.34	□□□□□ -0.59
SS18-222	ENST00000582792	KLB	Q86Z14	1044 aa		11.34	□□□□□ -0.59
SS18-222	ENST00000582792	KIR3DL3	Q8N743	410 aa		11.34	□□□□□ -0.59
SS18-222	ENST00000582792	OR4F5	Q8NH21	305 aa		11.34	□□□□□ -0.59
SS18-222	ENST00000582792	FANK1	Q8TC84	345 aa		11.34	□□□□□ -0.59
SS18-222	ENST00000582792	RAB40A	Q8WXH6	277 aa		11.34	□□□□□ -0.59
SS18-222	ENST00000582792	FEV	Q99581	238 aa		11.34	□□□□□ -0.59
SS18-222	ENST00000582792	GABARAPL1	Q9H0R8	117 aa		11.34	□□□□□ -0.59
SS18-222	ENST00000582792	OR52D1	Q9H346	318 aa		11.34	□□□□□ -0.59
SS18-222	ENST00000582792	ZNF556	Q9HAH1	456 aa		11.34	□□□□□ -0.59
SS18-222	ENST00000582792	BEX1	Q9HBH7	125 aa		11.34	□□□□□ -0.59
SS18-222	ENST00000582792	POLE4	Q9NR33	117 aa		11.34	□□□□□ -0.59
SS18-222	ENST00000582792	STARD10	Q9Y365	291 aa		11.34	□□□□□ -0.59
SS18-222	ENST00000582792	WNK1	Q9H4A3	2382 aa		11.34	□□□□□ -0.59
SS18-222	ENST00000582792	SRRM5	B3KS81	715 aa		11.33	□□□□□ -0.6
SS18-222	ENST00000582792	DOK2	O60496	412 aa		11.33	□□□□□ -0.6
SS18-222	ENST00000582792	SDHA	P31040	664 aa		11.33	□□□□□ -0.6
SS18-222	ENST00000582792	RPL4	P36578	427 aa	Known RBP	11.33	□□□□□ -0.6
SS18-222	ENST00000582792	HTR5A	P47898	357 aa		11.33	□□□□□ -0.6
SS18-222	ENST00000582792	RAG2	P55895	527 aa		11.33	□□□□□ -0.6
SS18-222	ENST00000582792	SCRN3	Q0VDG4	424 aa		11.33	□□□□□ -0.6
SS18-222	ENST00000582792	OLFML2A	Q68BL7	652 aa		11.33	□□□□□ -0.6
SS18-222	ENST00000582792	FAHD1	Q6P587	224 aa		11.33	□□□□□ -0.6
SS18-222	ENST00000582792	AMIGO2	Q86SJ2	522 aa		11.33	□□□□□ -0.6

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