RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 GLCCI1Q86VQ1 547 aa12.56□□□□□ -0.4
SS18-212ENST00000579061 HS3ST5Q8IZT8 346 aa12.56□□□□□ -0.4
SS18-212ENST00000579061 IQCF1Q8N6M8 205 aa12.56□□□□□ -0.4
SS18-212ENST00000579061 ZNF283Q8N7M2 679 aa12.56□□□□□ -0.4
SS18-212ENST00000579061 ATG16L2Q8NAA4 619 aa12.56□□□□□ -0.4
SS18-212ENST00000579061 OR6K6Q8NGW6 343 aa12.56□□□□□ -0.4
SS18-212ENST00000579061 OR51F2Q8NH61 342 aa12.56□□□□□ -0.4
SS18-212ENST00000579061 UTP4Q969X6 686 aaKnown RBP12.56□□□□□ -0.4
SS18-212ENST00000579061 KCNJ15Q99712 375 aa12.56□□□□□ -0.4
SS18-212ENST00000579061 SLC30A2Q9BRI3 323 aa12.56□□□□□ -0.4
SS18-212ENST00000579061 TEX12Q9BXU0 123 aa12.56□□□□□ -0.4
SS18-212ENST00000579061 TREM2Q9NZC2 230 aa12.56□□□□□ -0.4
SS18-212ENST00000579061 TMEFF2Q9UIK5 374 aaPredicted RBP12.56□□□□□ -0.4
SS18-212ENST00000579061 WNK2Q9Y3S1 2297 aa12.56□□□□□ -0.4
SS18-212ENST00000579061 FAM157AC9JC47 383 aa12.55□□□□□ -0.4
SS18-212ENST00000579061 ZNF878C9JN71 531 aa12.55□□□□□ -0.4
SS18-212ENST00000579061 IGHV2-5P01817 119 aa12.55□□□□□ -0.4
SS18-212ENST00000579061 MSMBP08118 114 aa12.55□□□□□ -0.4
SS18-212ENST00000579061 SPARCP09486 303 aa12.55□□□□□ -0.4
SS18-212ENST00000579061 PSKH1P11801 424 aa12.55□□□□□ -0.4
SS18-212ENST00000579061 PRKACGP22612 351 aa12.55□□□□□ -0.4
SS18-212ENST00000579061 GSTT1P30711 240 aa12.55□□□□□ -0.4
SS18-212ENST00000579061 GK2Q14410 553 aaPredicted RBP12.55□□□□□ -0.4
SS18-212ENST00000579061 SPRNQ5BIV9 151 aa12.55□□□□□ -0.4
SS18-212ENST00000579061 SHFQ7M4L6 423 aa12.55□□□□□ -0.4
SS18-212ENST00000579061 NAA40Q86UY6 237 aa12.55□□□□□ -0.4
SS18-212ENST00000579061 OR5AS1Q8N127 324 aa12.55□□□□□ -0.4
SS18-212ENST00000579061 OR5K1Q8NHB7 308 aa12.55□□□□□ -0.4
SS18-212ENST00000579061 ST7LQ8TDW4 575 aa12.55□□□□□ -0.4
SS18-212ENST00000579061 ITLN1Q8WWA0 313 aa12.55□□□□□ -0.4
SS18-212ENST00000579061 TMEM186Q96B77 213 aa12.55□□□□□ -0.4
SS18-212ENST00000579061 SLAMF6Q96DU3 332 aa12.55□□□□□ -0.4
SS18-212ENST00000579061 DUS3LQ96G46 650 aaKnown RBP12.55□□□□□ -0.4
SS18-212ENST00000579061 INTS14Q96SY0 518 aa12.55□□□□□ -0.4
SS18-212ENST00000579061 ZNF665Q9H7R5 613 aa12.55□□□□□ -0.4
SS18-212ENST00000579061 MED20Q9H944 212 aa12.55□□□□□ -0.4
SS18-212ENST00000579061 SLC25A19Q9HC21 320 aa12.55□□□□□ -0.4
SS18-212ENST00000579061 TMEM106BQ9NUM4 274 aa12.55□□□□□ -0.4
SS18-212ENST00000579061 NPTNQ9Y639 398 aa12.55□□□□□ -0.4
SS18-212ENST00000579061 MXRA5Q9NR99 2828 aa12.55□□□□□ -0.4
SS18-212ENST00000579061 FAM183AA6NL82 134 aa12.54□□□□□ -0.4
SS18-212ENST00000579061 PRR23D1E9PI22 279 aaPredicted RBP12.54□□□□□ -0.4
SS18-212ENST00000579061 PRODHO43272 600 aa12.54□□□□□ -0.4
SS18-212ENST00000579061 TIPRLO75663 272 aa12.54□□□□□ -0.4
SS18-212ENST00000579061 PRR23D2P0DMB1 279 aaPredicted RBP12.54□□□□□ -0.4
SS18-212ENST00000579061 SRD5A1P18405 259 aa12.54□□□□□ -0.4
SS18-212ENST00000579061 SLC15A1P46059 708 aa12.54□□□□□ -0.4
SS18-212ENST00000579061 SLC6A9P48067 706 aa12.54□□□□□ -0.4
SS18-212ENST00000579061 SRP9P49458 86 aaKnown RBP12.54□□□□□ -0.4
SS18-212ENST00000579061 GRB2P62993 217 aaKnown RBP12.54□□□□□ -0.4
SS18-212ENST00000579061 TAF13Q15543 124 aa12.54□□□□□ -0.4
SS18-212ENST00000579061 FAHD1Q6P587 224 aa12.54□□□□□ -0.4
SS18-212ENST00000579061 PGAP1Q75T13 922 aa12.54□□□□□ -0.4
SS18-212ENST00000579061 PARP8Q8N3A8 854 aa12.54□□□□□ -0.4
SS18-212ENST00000579061 OR2V2Q96R30 315 aa12.54□□□□□ -0.4
SS18-212ENST00000579061 COPS4Q9BT78 406 aa12.54□□□□□ -0.4
SS18-212ENST00000579061 TOR3AQ9H497 397 aa12.54□□□□□ -0.4
SS18-212ENST00000579061 CENPMQ9NSP4 180 aa12.54□□□□□ -0.4
SS18-212ENST00000579061 TMEM100Q9NV29 134 aa12.54□□□□□ -0.4
SS18-212ENST00000579061 PPP1R3CQ9UQK1 317 aa12.54□□□□□ -0.4
SS18-212ENST00000579061 NOP16Q9Y3C1 178 aaKnown RBP12.54□□□□□ -0.4
SS18-212ENST00000579061 TRAV20A0A0B4J274 112 aa12.53□□□□□ -0.4
SS18-212ENST00000579061 MLNRO43193 412 aa12.53□□□□□ -0.4
SS18-212ENST00000579061 IGHV2-70P01814 119 aa12.53□□□□□ -0.4
SS18-212ENST00000579061 APOC1P02654 83 aa12.53□□□□□ -0.4
SS18-212ENST00000579061 CRISP1P54107 249 aa12.53□□□□□ -0.4
SS18-212ENST00000579061 EIF2B1Q14232 305 aaKnown RBP12.53□□□□□ -0.4
SS18-212ENST00000579061 ATP6AP1Q15904 470 aa12.53□□□□□ -0.4
SS18-212ENST00000579061 ZNF181Q2M3W8 571 aa12.53□□□□□ -0.4
SS18-212ENST00000579061 SLC35D3Q5M8T2 416 aa12.53□□□□□ -0.4
SS18-212ENST00000579061 C1orf146Q5VVC0 180 aa12.53□□□□□ -0.4
SS18-212ENST00000579061 MRPL21Q7Z2W9 205 aaKnown RBP12.53□□□□□ -0.4
SS18-212ENST00000579061 DPY19L4Q7Z388 723 aa12.53□□□□□ -0.4
SS18-212ENST00000579061 ERI1Q8IV48 349 aaKnown RBP12.53□□□□□ -0.4
SS18-212ENST00000579061 TIGD4Q8IY51 512 aa12.53□□□□□ -0.4
SS18-212ENST00000579061 CELF2-AS1Q8N7Q2 184 aa12.53□□□□□ -0.4
SS18-212ENST00000579061 OR6N2Q8NGY6 317 aa12.53□□□□□ -0.4
SS18-212ENST00000579061 RNF133Q8WVZ7 376 aa12.53□□□□□ -0.4
SS18-212ENST00000579061 OTULINQ96BN8 352 aa12.53□□□□□ -0.4
SS18-212ENST00000579061 MEGF10Q96KG7 1140 aa12.53□□□□□ -0.4
SS18-212ENST00000579061 REPIN1Q9BWE0 567 aaKnown RBP12.53□□□□□ -0.4
SS18-212ENST00000579061 SLC22A4Q9H015 551 aa12.53□□□□□ -0.4
SS18-212ENST00000579061 OR51V1Q9H2C8 321 aa12.53□□□□□ -0.4
SS18-212ENST00000579061 OPA3Q9H6K4 179 aa12.53□□□□□ -0.4
SS18-212ENST00000579061 SP140LQ9H930 580 aa12.53□□□□□ -0.4
SS18-212ENST00000579061 GCM1Q9NP62 436 aa12.53□□□□□ -0.4
SS18-212ENST00000579061 PAPOLBQ9NRJ5 636 aaKnown RBP12.53□□□□□ -0.4
SS18-212ENST00000579061 HIF1ANQ9NWT6 349 aa12.53□□□□□ -0.4
SS18-212ENST00000579061 KIF17Q9P2E2 1029 aa12.53□□□□□ -0.4
SS18-212ENST00000579061 DOCK11Q5JSL3 2073 aa12.52□□□□□ -0.4
SS18-212ENST00000579061 SVEP1Q4LDE5 3571 aa12.52□□□□□ -0.4
SS18-212ENST00000579061 XRCC2O43543 280 aa12.52□□□□□ -0.41
SS18-212ENST00000579061 FCGR1AP12314 374 aa12.52□□□□□ -0.41
SS18-212ENST00000579061 FASP25445 335 aa12.52□□□□□ -0.41
SS18-212ENST00000579061 GATA4P43694 442 aa12.52□□□□□ -0.41
SS18-212ENST00000579061 DAPP51397 102 aa12.52□□□□□ -0.41
SS18-212ENST00000579061 PRKXP51817 358 aa12.52□□□□□ -0.41
SS18-212ENST00000579061 ESRRGP62508 458 aa12.52□□□□□ -0.41
SS18-212ENST00000579061 SNAI3Q3KNW1 292 aa12.52□□□□□ -0.41
SS18-212ENST00000579061 TMEM155Q4W5P6 130 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms