RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 N6AMT1Q9Y5N5 214 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 NPTNQ9Y639 398 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 SOX21Q9Y651 276 aaPredicted RBP5.66□□□□□ -1.5
VPS53-213ENST00000572334 VWFP04275 2813 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 NOTCH1P46531 2555 aa5.66□□□□□ -1.5
VPS53-213ENST00000572334 A8MXK9 166 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 TRIM77I1YAP6 450 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 MRASO14807 208 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 BET1O15155 118 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 PTP4A3O75365 173 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 NPPAP01160 153 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 MT-ND5P03915 603 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 CTLA4P16410 223 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 KITLGP21583 273 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 MSR1P21757 451 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 GATA3P23771 443 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 GCH1P30793 250 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 SLC6A9P48067 706 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 FXYD6P3P58550 94 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 GABARAPL2P60520 117 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 DBPQ10586 325 aaPredicted RBP5.65□□□□□ -1.5
VPS53-213ENST00000572334 ST3GAL3Q11203 375 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 ZMYND11Q15326 602 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 MESTQ5EB52 335 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 MTX3Q5HYI7 312 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 SAMD4BQ5PRF9 694 aaKnown RBP5.65□□□□□ -1.5
VPS53-213ENST00000572334 C8orf82Q6P1X6 216 aaPredicted RBP5.65□□□□□ -1.5
VPS53-213ENST00000572334 FAM122CQ6P4D5 195 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 ERICH5Q6P6B1 374 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 ZNF773Q6PK81 442 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 VASH1Q7L8A9 365 aaPredicted RBP5.65□□□□□ -1.5
VPS53-213ENST00000572334 SYT9Q86SS6 491 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 ADCK1Q86TW2 530 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 LRRC28Q86X40 367 aaPredicted RBP5.65□□□□□ -1.5
VPS53-213ENST00000572334 OFCC1Q8IZS5 231 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 PARP8Q8N3A8 854 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 SIGLECL1Q8N7X8 197 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 OR51A7Q8NH64 312 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 CAPSLQ8WWF8 208 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 SLC7A6Q92536 515 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 TAF15Q92804 592 aaKnown RBP eCLIP5.65□□□□□ -1.5
VPS53-213ENST00000572334 GCDHQ92947 438 aaPredicted RBP5.65□□□□□ -1.5
VPS53-213ENST00000572334 TIMD4Q96H15 378 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 Q96M85 177 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 RBP7Q96R05 134 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 DCUN1D5Q9BTE7 237 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 SUCNR1Q9BXA5 334 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 KCNN2Q9H2S1 579 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 PATZ1Q9HBE1 687 aaKnown RBP5.65□□□□□ -1.5
VPS53-213ENST00000572334 ZC4H2Q9NQZ6 224 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 TMEM106BQ9NUM4 274 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 ZNF69Q9UC07 566 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 CGGBP1Q9UFW8 167 aaPredicted RBP5.65□□□□□ -1.5
VPS53-213ENST00000572334 EGFL7Q9UHF1 273 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 PURGQ9UJV8 347 aaKnown RBP5.65□□□□□ -1.5
VPS53-213ENST00000572334 ZDHHC8Q9ULC8 765 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 STARD10Q9Y365 291 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 ADAM18Q9Y3Q7 739 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 PPIAL4AQ9Y536 164 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 TIMM10BQ9Y5J6 103 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 A3GALT2U3KPV4 340 aa5.65□□□□□ -1.5
VPS53-213ENST00000572334 LOC100653049A0A140TA62 436 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 A0A1B0GWJ7 208 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 A0A1W2PPL8 197 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 PLSCR5A0PG75 271 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 OR6C6A6NF89 314 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 DNAJC9-AS1A6NH13 148 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 AQP12BA6NM10 295 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 BBIP1A8MTZ0 92 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 TMPRSS2O15393 492 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 FOXH1O75593 365 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 KRT34O76011 436 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 GPANK1O95872 356 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 DBHP09172 617 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 SBK2P0C263 348 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 HKR1P10072 659 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 COX5BP10606 129 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 CTRB1P17538 263 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 ANOS1P23352 680 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 FASP25445 335 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 LIPAP38571 399 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 GPR4P46093 362 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 LIMS1P48059 325 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 NUDT2P50583 147 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 PPP5CP53041 499 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 AP2S1P53680 142 aaPredicted RBP5.64□□□□□ -1.51
VPS53-213ENST00000572334 RAB25P57735 213 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 TNFAIP6P98066 277 aaPredicted RBP5.64□□□□□ -1.51
VPS53-213ENST00000572334 ZNF45Q02386 682 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 PAX8Q06710 450 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 ZNF154Q13106 437 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 SCGB2A2Q13296 93 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 TRIM25Q14258 630 aaKnown RBP5.64□□□□□ -1.51
VPS53-213ENST00000572334 RSPO1Q2MKA7 263 aaPredicted RBP5.64□□□□□ -1.51
VPS53-213ENST00000572334 TMEM155Q4W5P6 130 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 CEP78Q5JTW2 689 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 GPR107Q5VW38 600 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 TTC23Q5W5X9 447 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 FAM205BPQ63HN1 556 aa5.64□□□□□ -1.51
VPS53-213ENST00000572334 CTRB2Q6GPI1 263 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms