RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 MT-CO2P00403 227 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 C1QAP02745 245 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 HIST1H2ABP04908 130 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 SOD3P08294 240 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 ADRA2AP08913 450 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 CST2P09228 141 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 OR8U9P0C7N5 309 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 CD79AP11912 226 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 CEACAM1P13688 526 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 FABP4P15090 132 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 MGMTP16455 207 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 HOXB6P17509 224 aaKnown RBP2.88□□□□□ -1.95
VPS35-208ENST00000568612 NFYAP23511 347 aaPredicted RBP2.88□□□□□ -1.95
VPS35-208ENST00000568612 AK4P27144 223 aaPredicted RBP2.88□□□□□ -1.95
VPS35-208ENST00000568612 TM4SF1P30408 202 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 SDC2P34741 201 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 SSTR5P35346 364 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 RPL4P36578 427 aaKnown RBP2.88□□□□□ -1.95
VPS35-208ENST00000568612 ELK3P41970 407 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 RPL29P47914 159 aaKnown RBP2.88□□□□□ -1.95
VPS35-208ENST00000568612 SLC6A8P48029 635 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 CSNK1A1P48729 337 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 INPP1P49441 399 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 RAB28P51157 221 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 ATP4BP51164 291 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 ZNF84P51523 738 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 GEMP55040 296 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 BIDP55957 195 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 NDUFA6P56556 154 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 ERVPABLB-1P60509 514 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 RHOGP84095 191 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 FAM3AP98173 230 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 AESQ08117 197 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 TMEM115Q12893 351 aaPredicted RBP2.88□□□□□ -1.95
VPS35-208ENST00000568612 OLIG2Q13516 323 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 TPBGQ13641 420 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 GPR18Q14330 331 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 ZNF235Q14590 738 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 MEF2DQ14814 521 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 MAD2L1BPQ15013 274 aaPredicted RBP2.88□□□□□ -1.95
VPS35-208ENST00000568612 RHEBQ15382 184 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 NSDHLQ15738 373 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 RAB30Q15771 203 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 SGCBQ16585 318 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 PRTGQ2VWP7 1150 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 ZNF699Q32M78 642 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 PGGHGQ32M88 737 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 ANXA2RQ3ZCQ2 193 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 ZNF658BQ4V348 819 aaPredicted RBP2.88□□□□□ -1.95
VPS35-208ENST00000568612 RAB6CQ53S08 254 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 ZNF789Q5FWF6 425 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 ALG10BQ5I7T1 473 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 PHYHD1Q5SRE7 291 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 LGSNQ5TDP6 509 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 OR2G6Q5TZ20 316 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 SYPL2Q5VXT5 272 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 TMEM198Q66K66 360 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 AWAT2Q6E213 333 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 OR10K2Q6IF99 312 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 PRR27Q6MZM9 219 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 STEAP1BQ6NZ63 245 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 ACSM6Q6P461 480 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 TMEM220Q6QAJ8 160 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 TBPL2Q6SJ96 375 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 SMARCD3Q6STE5 483 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 ENPP6Q6UWR7 440 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 HEPN1Q6WQI6 88 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 FAM57BQ71RH2 274 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 CHST9Q7L1S5 443 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 HIST3H2AQ7L7L0 130 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 C6orf120Q7Z4R8 191 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 RTN4RL2Q86UN3 420 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 CBWD2Q8IUF1 395 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 TRAPPC5Q8IUR0 188 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 ZDHHC21Q8IVQ6 265 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 CCDC117Q8IWD4 279 aaPredicted RBP2.88□□□□□ -1.95
VPS35-208ENST00000568612 RIMKLAQ8IXN7 391 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 CMTM1Q8IZ96 169 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 PELI3Q8N2H9 469 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 Q8N402 240 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 ZBTB2Q8N680 514 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 SLC38A9Q8NBW4 561 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 RNF149Q8NC42 400 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 ST6GALNAC3Q8NDV1 305 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 GPR26Q8NDV2 337 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 ZNF738Q8NE65 137 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 ZNF548Q8NEK5 533 aaPredicted RBP2.88□□□□□ -1.95
VPS35-208ENST00000568612 SDR9C7Q8NEX9 313 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 ATP6V1C2Q8NEY4 427 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 OR2Z1Q8NG97 314 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 OR7G2Q8NG99 324 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 OR10G3Q8NGC4 313 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 OR4K5Q8NGD3 323 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 OR9K2Q8NGE7 335 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 OR1S2Q8NGQ3 325 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 OR13C9Q8NGT0 318 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 CNIH3Q8TBE1 160 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 SMAP2Q8WU79 429 aaPredicted RBP2.88□□□□□ -1.95
VPS35-208ENST00000568612 OVCA2Q8WZ82 227 aa2.88□□□□□ -1.95
VPS35-208ENST00000568612 SEMA4DQ92854 862 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms