RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 DNAJC27Q9NZQ0 273 aa11.82□□□□□ -0.52
CLN3-235ENST00000568497 EIF3KQ9UBQ5 218 aaKnown RBP11.82□□□□□ -0.52
CLN3-235ENST00000568497 FBXL3Q9UKT7 428 aa11.82□□□□□ -0.52
CLN3-235ENST00000568497 SPEF1Q9Y4P9 236 aa11.82□□□□□ -0.52
CLN3-235ENST00000568497 PMF1-BGLAPU3KQ54 211 aa11.82□□□□□ -0.52
CLN3-235ENST00000568497 A0A0A6YYJ9 748 aa11.81□□□□□ -0.52
CLN3-235ENST00000568497 IGHV4-61A0A0C4DH41 118 aa11.81□□□□□ -0.52
CLN3-235ENST00000568497 ZSCAN5BA6NJL1 495 aa11.81□□□□□ -0.52
CLN3-235ENST00000568497 CDC14BO60729 498 aa11.81□□□□□ -0.52
CLN3-235ENST00000568497 GLCEO94923 617 aa11.81□□□□□ -0.52
CLN3-235ENST00000568497 PTHP01270 115 aa11.81□□□□□ -0.52
CLN3-235ENST00000568497 ACSM4P0C7M7 580 aa11.81□□□□□ -0.52
CLN3-235ENST00000568497 BMP4P12644 408 aa11.81□□□□□ -0.52
CLN3-235ENST00000568497 SLC2A5P22732 501 aa11.81□□□□□ -0.52
CLN3-235ENST00000568497 PAX7P23759 505 aa11.81□□□□□ -0.52
CLN3-235ENST00000568497 COL8A2P25067 703 aa11.81□□□□□ -0.52
CLN3-235ENST00000568497 PSG7Q13046 419 aa11.81□□□□□ -0.52
CLN3-235ENST00000568497 C12orf73Q69YU5 71 aa11.81□□□□□ -0.52
CLN3-235ENST00000568497 OR2T2Q6IF00 324 aa11.81□□□□□ -0.52
CLN3-235ENST00000568497 SYT9Q86SS6 491 aa11.81□□□□□ -0.52
CLN3-235ENST00000568497 TIGD4Q8IY51 512 aa11.81□□□□□ -0.52
CLN3-235ENST00000568497 PQLC1Q8N2U9 271 aa11.81□□□□□ -0.52
CLN3-235ENST00000568497 GJC3Q8NFK1 279 aa11.81□□□□□ -0.52
CLN3-235ENST00000568497 SEMA6DQ8NFY4 1073 aa11.81□□□□□ -0.52
CLN3-235ENST00000568497 OR2AE1Q8NHA4 323 aa11.81□□□□□ -0.52
CLN3-235ENST00000568497 YIPF5Q969M3 257 aa11.81□□□□□ -0.52
CLN3-235ENST00000568497 CMBLQ96DG6 245 aa11.81□□□□□ -0.52
CLN3-235ENST00000568497 SLAMF6Q96DU3 332 aa11.81□□□□□ -0.52
CLN3-235ENST00000568497 INTS14Q96SY0 518 aa11.81□□□□□ -0.52
CLN3-235ENST00000568497 MOV10Q9HCE1 1003 aaKnown RBP11.81□□□□□ -0.52
CLN3-235ENST00000568497 DCAF16Q9NXF7 216 aa11.81□□□□□ -0.52
CLN3-235ENST00000568497 COPS3Q9UNS2 423 aa11.81□□□□□ -0.52
CLN3-235ENST00000568497 ZNF281Q9Y2X9 895 aa11.81□□□□□ -0.52
CLN3-235ENST00000568497 TMEM89A2RUT3 159 aa11.8□□□□□ -0.52
CLN3-235ENST00000568497 FAM157AC9JC47 383 aa11.8□□□□□ -0.52
CLN3-235ENST00000568497 M0R233 179 aa11.8□□□□□ -0.52
CLN3-235ENST00000568497 LCATP04180 440 aa11.8□□□□□ -0.52
CLN3-235ENST00000568497 HMGN1P05114 100 aa11.8□□□□□ -0.52
CLN3-235ENST00000568497 ALPLP05186 524 aa11.8□□□□□ -0.52
CLN3-235ENST00000568497 ZNF250P15622 560 aa11.8□□□□□ -0.52
CLN3-235ENST00000568497 RAD52P43351 418 aa11.8□□□□□ -0.52
CLN3-235ENST00000568497 KLF3P57682 345 aaPredicted RBP11.8□□□□□ -0.52
CLN3-235ENST00000568497 HOXA4Q00056 320 aaPredicted RBP11.8□□□□□ -0.52
CLN3-235ENST00000568497 RCN1Q15293 331 aa11.8□□□□□ -0.52
CLN3-235ENST00000568497 KRTAP27-1Q3LI81 207 aa11.8□□□□□ -0.52
CLN3-235ENST00000568497 PLEKHG7Q6ZR37 379 aa11.8□□□□□ -0.52
CLN3-235ENST00000568497 PARP8Q8N3A8 854 aa11.8□□□□□ -0.52
CLN3-235ENST00000568497 GALNT4Q8N4A0 578 aa11.8□□□□□ -0.52
CLN3-235ENST00000568497 BHLHE23Q8NDY6 225 aa11.8□□□□□ -0.52
CLN3-235ENST00000568497 ST7LQ8TDW4 575 aa11.8□□□□□ -0.52
CLN3-235ENST00000568497 DVL3Q92997 716 aaPredicted RBP11.8□□□□□ -0.52
CLN3-235ENST00000568497 TBX5Q99593 518 aa11.8□□□□□ -0.52
CLN3-235ENST00000568497 COQ7Q99807 217 aa11.8□□□□□ -0.52
CLN3-235ENST00000568497 ATF6BQ99941 703 aa11.8□□□□□ -0.52
CLN3-235ENST00000568497 COPS4Q9BT78 406 aa11.8□□□□□ -0.52
CLN3-235ENST00000568497 ABHD6Q9BV23 337 aa11.8□□□□□ -0.52
CLN3-235ENST00000568497 C1orf198Q9H425 327 aa11.8□□□□□ -0.52
CLN3-235ENST00000568497 TOR3AQ9H497 397 aa11.8□□□□□ -0.52
CLN3-235ENST00000568497 NARFLQ9H6Q4 476 aa11.8□□□□□ -0.52
CLN3-235ENST00000568497 METTL17Q9H7H0 456 aaPredicted RBP11.8□□□□□ -0.52
CLN3-235ENST00000568497 NDRG4Q9ULP0 352 aaKnown RBP11.8□□□□□ -0.52
CLN3-235ENST00000568497 H0YL77 283 aa11.79□□□□□ -0.52
CLN3-235ENST00000568497 NDUFS8O00217 210 aa11.79□□□□□ -0.52
CLN3-235ENST00000568497 TMPRSS2O15393 492 aa11.79□□□□□ -0.52
CLN3-235ENST00000568497 SELEP16581 610 aa11.79□□□□□ -0.52
CLN3-235ENST00000568497 HOXB6P17509 224 aaKnown RBP11.79□□□□□ -0.52
CLN3-235ENST00000568497 PAICSP22234 425 aaKnown RBP11.79□□□□□ -0.52
CLN3-235ENST00000568497 SLC6A9P48067 706 aa11.79□□□□□ -0.52
CLN3-235ENST00000568497 CCL8P80075 99 aa11.79□□□□□ -0.52
CLN3-235ENST00000568497 TRIP10Q15642 601 aa11.79□□□□□ -0.52
CLN3-235ENST00000568497 ZFP1Q6P2D0 407 aa11.79□□□□□ -0.52
CLN3-235ENST00000568497 Q6ZR03 302 aa11.79□□□□□ -0.52
CLN3-235ENST00000568497 THEM6Q8WUY1 208 aa11.79□□□□□ -0.52
CLN3-235ENST00000568497 SOX7Q9BT81 388 aa11.79□□□□□ -0.52
CLN3-235ENST00000568497 BCL2L14Q9BZR8 327 aa11.79□□□□□ -0.52
CLN3-235ENST00000568497 PPP1R3EQ9H7J1 279 aa11.79□□□□□ -0.52
CLN3-235ENST00000568497 ZNF696Q9H7X3 374 aa11.79□□□□□ -0.52
CLN3-235ENST00000568497 ZNF319Q9P2F9 582 aa11.79□□□□□ -0.52
CLN3-235ENST00000568497 NKX1-2Q9UD57 310 aaPredicted RBP11.79□□□□□ -0.52
CLN3-235ENST00000568497 NOTCH1P46531 2555 aa11.78□□□□□ -0.52
CLN3-235ENST00000568497 IGLV3-9A0A075B6K5 115 aa11.78□□□□□ -0.52
CLN3-235ENST00000568497 LRP5LA4QPB2 252 aa11.78□□□□□ -0.52
CLN3-235ENST00000568497 WNT9BO14905 357 aa11.78□□□□□ -0.52
CLN3-235ENST00000568497 TIMM8AO60220 97 aaPredicted RBP11.78□□□□□ -0.52
CLN3-235ENST00000568497 IGHV1-46P01743 117 aa11.78□□□□□ -0.52
CLN3-235ENST00000568497 COX5BP10606 129 aa11.78□□□□□ -0.52
CLN3-235ENST00000568497 DAOP14920 347 aa11.78□□□□□ -0.52
CLN3-235ENST00000568497 GCH1P30793 250 aa11.78□□□□□ -0.52
CLN3-235ENST00000568497 PPOXP50336 477 aa11.78□□□□□ -0.52
CLN3-235ENST00000568497 RPS23P62266 143 aaKnown RBP11.78□□□□□ -0.52
CLN3-235ENST00000568497 ESRRGP62508 458 aa11.78□□□□□ -0.52
CLN3-235ENST00000568497 GABPB1Q06547 395 aaPredicted RBP11.78□□□□□ -0.52
CLN3-235ENST00000568497 TAF13Q15543 124 aa11.78□□□□□ -0.52
CLN3-235ENST00000568497 ZNF718Q3SXZ3 478 aa11.78□□□□□ -0.52
CLN3-235ENST00000568497 GLYATL3Q5SZD4 288 aa11.78□□□□□ -0.52
CLN3-235ENST00000568497 LRRN1Q6UXK5 716 aa11.78□□□□□ -0.52
CLN3-235ENST00000568497 TREML4Q6UXN2 200 aa11.78□□□□□ -0.52
CLN3-235ENST00000568497 FAM81AQ8TBF8 368 aa11.78□□□□□ -0.52
CLN3-235ENST00000568497 ZNF418Q8TF45 676 aaPredicted RBP11.78□□□□□ -0.52
CLN3-235ENST00000568497 PPP1R14AQ96A00 147 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms