RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 TMEM158Q8WZ71 300 aa12.73□□□□□ -0.37
VPS39-210ENST00000568357 SPTSSAQ969W0 71 aa12.73□□□□□ -0.37
VPS39-210ENST00000568357 SLAMF6Q96DU3 332 aa12.73□□□□□ -0.37
VPS39-210ENST00000568357 ELMOD3Q96FG2 381 aa12.73□□□□□ -0.37
VPS39-210ENST00000568357 ZNF799Q96GE5 643 aa12.73□□□□□ -0.37
VPS39-210ENST00000568357 MARCH7Q9H992 704 aa12.73□□□□□ -0.37
VPS39-210ENST00000568357 PAPOLBQ9NRJ5 636 aaKnown RBP12.73□□□□□ -0.37
VPS39-210ENST00000568357 CENPMQ9NSP4 180 aa12.73□□□□□ -0.37
VPS39-210ENST00000568357 TMEM160Q9NX00 188 aa12.73□□□□□ -0.37
VPS39-210ENST00000568357 PRR23D1E9PI22 279 aaPredicted RBP12.72□□□□□ -0.37
VPS39-210ENST00000568357 G3V2T6 193 aa12.72□□□□□ -0.37
VPS39-210ENST00000568357 MITFO75030 526 aaPredicted RBP12.72□□□□□ -0.37
VPS39-210ENST00000568357 GLCEO94923 617 aa12.72□□□□□ -0.37
VPS39-210ENST00000568357 PRR23D2P0DMB1 279 aaPredicted RBP12.72□□□□□ -0.37
VPS39-210ENST00000568357 IGFBP5P24593 272 aa12.72□□□□□ -0.37
VPS39-210ENST00000568357 FASP25445 335 aa12.72□□□□□ -0.37
VPS39-210ENST00000568357 OTX1P32242 354 aaPredicted RBP12.72□□□□□ -0.37
VPS39-210ENST00000568357 CRISP1P54107 249 aa12.72□□□□□ -0.37
VPS39-210ENST00000568357 SNAI3Q3KNW1 292 aa12.72□□□□□ -0.37
VPS39-210ENST00000568357 CHRFAM7AQ494W8 412 aa12.72□□□□□ -0.37
VPS39-210ENST00000568357 SPATC1Q76KD6 591 aa12.72□□□□□ -0.37
VPS39-210ENST00000568357 DPY19L4Q7Z388 723 aa12.72□□□□□ -0.37
VPS39-210ENST00000568357 AMIGO2Q86SJ2 522 aa12.72□□□□□ -0.37
VPS39-210ENST00000568357 LINC01356Q8N9X3 169 aa12.72□□□□□ -0.37
VPS39-210ENST00000568357 OR8G5Q8NG78 346 aa12.72□□□□□ -0.37
VPS39-210ENST00000568357 LRTOMTQ8WZ04 291 aa12.72□□□□□ -0.37
VPS39-210ENST00000568357 ZMYND19Q96E35 227 aaPredicted RBP12.72□□□□□ -0.37
VPS39-210ENST00000568357 ZNF582Q96NG8 517 aaPredicted RBP12.72□□□□□ -0.37
VPS39-210ENST00000568357 INTS14Q96SY0 518 aa12.72□□□□□ -0.37
VPS39-210ENST00000568357 SLC25A19Q9HC21 320 aa12.72□□□□□ -0.37
VPS39-210ENST00000568357 DCAF16Q9NXF7 216 aa12.72□□□□□ -0.37
VPS39-210ENST00000568357 WIPI2Q9Y4P8 454 aa12.72□□□□□ -0.37
VPS39-210ENST00000568357 SVEP1Q4LDE5 3571 aa12.71□□□□□ -0.37
VPS39-210ENST00000568357 IQCF6A8MYZ5 107 aa12.71□□□□□ -0.37
VPS39-210ENST00000568357 FAM157AC9JC47 383 aa12.71□□□□□ -0.37
VPS39-210ENST00000568357 H0YL77 283 aa12.71□□□□□ -0.37
VPS39-210ENST00000568357 PAICSP22234 425 aaKnown RBP12.71□□□□□ -0.37
VPS39-210ENST00000568357 SLC6A9P48067 706 aa12.71□□□□□ -0.37
VPS39-210ENST00000568357 PRKXP51817 358 aa12.71□□□□□ -0.37
VPS39-210ENST00000568357 CDH15P55291 814 aa12.71□□□□□ -0.37
VPS39-210ENST00000568357 EIF2B1Q14232 305 aaKnown RBP12.71□□□□□ -0.37
VPS39-210ENST00000568357 PTGES3Q15185 160 aaKnown RBP12.71□□□□□ -0.37
VPS39-210ENST00000568357 KLHL12Q53G59 568 aa12.71□□□□□ -0.37
VPS39-210ENST00000568357 ERI1Q8IV48 349 aaKnown RBP12.71□□□□□ -0.37
VPS39-210ENST00000568357 TIGD4Q8IY51 512 aa12.71□□□□□ -0.37
VPS39-210ENST00000568357 PARP8Q8N3A8 854 aa12.71□□□□□ -0.37
VPS39-210ENST00000568357 BHLHE23Q8NDY6 225 aa12.71□□□□□ -0.37
VPS39-210ENST00000568357 BBS1Q8NFJ9 593 aa12.71□□□□□ -0.37
VPS39-210ENST00000568357 OR13G1Q8NGZ3 307 aa12.71□□□□□ -0.37
VPS39-210ENST00000568357 ITLN1Q8WWA0 313 aa12.71□□□□□ -0.37
VPS39-210ENST00000568357 DNAJC9Q8WXX5 260 aa12.71□□□□□ -0.37
VPS39-210ENST00000568357 AMELYQ99218 206 aa12.71□□□□□ -0.37
VPS39-210ENST00000568357 KCNJ15Q99712 375 aa12.71□□□□□ -0.37
VPS39-210ENST00000568357 SLC30A2Q9BRI3 323 aa12.71□□□□□ -0.37
VPS39-210ENST00000568357 COPS4Q9BT78 406 aa12.71□□□□□ -0.37
VPS39-210ENST00000568357 ABHD6Q9BV23 337 aa12.71□□□□□ -0.37
VPS39-210ENST00000568357 TVP23BQ9NYZ1 205 aa12.71□□□□□ -0.37
VPS39-210ENST00000568357 KIF17Q9P2E2 1029 aa12.71□□□□□ -0.37
VPS39-210ENST00000568357 IL19Q9UHD0 177 aa12.71□□□□□ -0.37
VPS39-210ENST00000568357 KCNS2Q9ULS6 477 aa12.71□□□□□ -0.37
VPS39-210ENST00000568357 CLDN25C9JDP6 229 aa12.7□□□□□ -0.38
VPS39-210ENST00000568357 CIB2O75838 187 aa12.7□□□□□ -0.38
VPS39-210ENST00000568357 SLC2A1P11166 492 aa12.7□□□□□ -0.38
VPS39-210ENST00000568357 SLC2A5P22732 501 aa12.7□□□□□ -0.38
VPS39-210ENST00000568357 TNFSF4P23510 183 aa12.7□□□□□ -0.38
VPS39-210ENST00000568357 EPHA2P29317 976 aa12.7□□□□□ -0.38
VPS39-210ENST00000568357 ZNF92Q03936 586 aa12.7□□□□□ -0.38
VPS39-210ENST00000568357 MALLQ13021 153 aa12.7□□□□□ -0.38
VPS39-210ENST00000568357 TAF13Q15543 124 aa12.7□□□□□ -0.38
VPS39-210ENST00000568357 SNAPC1Q16533 368 aa12.7□□□□□ -0.38
VPS39-210ENST00000568357 FAM120AOSQ5T036 256 aa12.7□□□□□ -0.38
VPS39-210ENST00000568357 DRAM2Q6UX65 266 aa12.7□□□□□ -0.38
VPS39-210ENST00000568357 CCDC121Q6ZUS5 278 aa12.7□□□□□ -0.38
VPS39-210ENST00000568357 ZNF283Q8N7M2 679 aa12.7□□□□□ -0.38
VPS39-210ENST00000568357 OR10AD1Q8NGE0 317 aa12.7□□□□□ -0.38
VPS39-210ENST00000568357 OR6N2Q8NGY6 317 aa12.7□□□□□ -0.38
VPS39-210ENST00000568357 RAB1CQ92928 201 aa12.7□□□□□ -0.38
VPS39-210ENST00000568357 OR2V2Q96R30 315 aa12.7□□□□□ -0.38
VPS39-210ENST00000568357 BEX2Q9BXY8 128 aa12.7□□□□□ -0.38
VPS39-210ENST00000568357 SEMA6AQ9H2E6 1030 aa12.7□□□□□ -0.38
VPS39-210ENST00000568357 CDC42EP3Q9UKI2 254 aa12.7□□□□□ -0.38
VPS39-210ENST00000568357 N6AMT1Q9Y5N5 214 aa12.7□□□□□ -0.38
VPS39-210ENST00000568357 A0A1B0GWJ7 208 aa12.69□□□□□ -0.38
VPS39-210ENST00000568357 B4DSR2 109 aa12.69□□□□□ -0.38
VPS39-210ENST00000568357 ZNF878C9JN71 531 aa12.69□□□□□ -0.38
VPS39-210ENST00000568357 HAX1O00165 279 aa12.69□□□□□ -0.38
VPS39-210ENST00000568357 PHF1O43189 567 aaPredicted RBP12.69□□□□□ -0.38
VPS39-210ENST00000568357 MLNRO43193 412 aa12.69□□□□□ -0.38
VPS39-210ENST00000568357 SELENOFO60613 162 aa12.69□□□□□ -0.38
VPS39-210ENST00000568357 HLA-DPB1P04440 258 aa12.69□□□□□ -0.38
VPS39-210ENST00000568357 SELEP16581 610 aa12.69□□□□□ -0.38
VPS39-210ENST00000568357 TNFRSF1AP19438 455 aa12.69□□□□□ -0.38
VPS39-210ENST00000568357 ESRRGP62508 458 aa12.69□□□□□ -0.38
VPS39-210ENST00000568357 GLYATL3Q5SZD4 288 aa12.69□□□□□ -0.38
VPS39-210ENST00000568357 KDM4DQ6B0I6 523 aa12.69□□□□□ -0.38
VPS39-210ENST00000568357 IL17RELQ6ZVW7 336 aa12.69□□□□□ -0.38
VPS39-210ENST00000568357 PGAP1Q75T13 922 aa12.69□□□□□ -0.38
VPS39-210ENST00000568357 ZDHHC13Q8IUH4 622 aa12.69□□□□□ -0.38
VPS39-210ENST00000568357 OR2AE1Q8NHA4 323 aa12.69□□□□□ -0.38
VPS39-210ENST00000568357 RNF133Q8WVZ7 376 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms