RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 BRD7Q9NPI1 651 aa16.7■□□□□ 0.26
CLN3-225ENST00000566824 CLN6Q9NWW5 311 aa16.7■□□□□ 0.26
CLN3-225ENST00000566824 ZSCAN5BA6NJL1 495 aa16.69■□□□□ 0.26
CLN3-225ENST00000566824 M0R233 179 aa16.69■□□□□ 0.26
CLN3-225ENST00000566824 SSX4O60224 188 aa16.69■□□□□ 0.26
CLN3-225ENST00000566824 LILRA1O75019 489 aa16.69■□□□□ 0.26
CLN3-225ENST00000566824 HSD11B1P28845 292 aa16.69■□□□□ 0.26
CLN3-225ENST00000566824 AQP4P55087 323 aa16.69■□□□□ 0.26
CLN3-225ENST00000566824 ZNF121P58317 390 aaPredicted RBP16.69■□□□□ 0.26
CLN3-225ENST00000566824 CXCR4P61073 352 aa16.69■□□□□ 0.26
CLN3-225ENST00000566824 GRB2P62993 217 aaKnown RBP16.69■□□□□ 0.26
CLN3-225ENST00000566824 GK2Q14410 553 aaPredicted RBP16.69■□□□□ 0.26
CLN3-225ENST00000566824 NKPD1Q17RQ9 610 aa16.69■□□□□ 0.26
CLN3-225ENST00000566824 GLYATL3Q5SZD4 288 aa16.69■□□□□ 0.26
CLN3-225ENST00000566824 OR2T2Q6IF00 324 aa16.69■□□□□ 0.26
CLN3-225ENST00000566824 UNQ6126/PRO20091Q6UXV3 157 aa16.69■□□□□ 0.26
CLN3-225ENST00000566824 FBXW12Q6X9E4 464 aa16.69■□□□□ 0.26
CLN3-225ENST00000566824 Q6ZR03 302 aa16.69■□□□□ 0.26
CLN3-225ENST00000566824 CNIH3Q8TBE1 160 aa16.69■□□□□ 0.26
CLN3-225ENST00000566824 RFKQ969G6 155 aa16.69■□□□□ 0.26
CLN3-225ENST00000566824 HAVCR1Q96D42 359 aa16.69■□□□□ 0.26
CLN3-225ENST00000566824 RNFT2Q96EX2 444 aa16.69■□□□□ 0.26
CLN3-225ENST00000566824 OR8B4Q96RC9 309 aa16.69■□□□□ 0.26
CLN3-225ENST00000566824 PURGQ9UJV8 347 aaKnown RBP16.69■□□□□ 0.26
CLN3-225ENST00000566824 ZNF469Q96JG9 3925 aaPredicted RBP16.68■□□□□ 0.26
CLN3-225ENST00000566824 A0A1W2PQL4 384 aaPredicted RBP16.68■□□□□ 0.26
CLN3-225ENST00000566824 H3BSA7 217 aa16.68■□□□□ 0.26
CLN3-225ENST00000566824 J3QRE1 110 aa16.68■□□□□ 0.26
CLN3-225ENST00000566824 NCR1O76036 304 aa16.68■□□□□ 0.26
CLN3-225ENST00000566824 BMP4P12644 408 aa16.68■□□□□ 0.26
CLN3-225ENST00000566824 KITLGP21583 273 aa16.68■□□□□ 0.26
CLN3-225ENST00000566824 CAPGP40121 348 aa16.68■□□□□ 0.26
CLN3-225ENST00000566824 MAGEB1P43366 347 aa16.68■□□□□ 0.26
CLN3-225ENST00000566824 SLC15A1P46059 708 aa16.68■□□□□ 0.26
CLN3-225ENST00000566824 MTNR1AP48039 350 aa16.68■□□□□ 0.26
CLN3-225ENST00000566824 EFNA4P52798 201 aa16.68■□□□□ 0.26
CLN3-225ENST00000566824 IL5RAQ01344 420 aa16.68■□□□□ 0.26
CLN3-225ENST00000566824 ZNF92Q03936 586 aa16.68■□□□□ 0.26
CLN3-225ENST00000566824 ZNF91Q05481 1191 aa16.68■□□□□ 0.26
CLN3-225ENST00000566824 HNRNPA0Q13151 305 aaKnown RBP16.68■□□□□ 0.26
CLN3-225ENST00000566824 RIPK1Q13546 671 aa16.68■□□□□ 0.26
CLN3-225ENST00000566824 SPRNQ5BIV9 151 aa16.68■□□□□ 0.26
CLN3-225ENST00000566824 MEDAGQ5VYS4 303 aa16.68■□□□□ 0.26
CLN3-225ENST00000566824 ZNF322Q6U7Q0 402 aaPredicted RBP16.68■□□□□ 0.26
CLN3-225ENST00000566824 PLEKHG7Q6ZR37 379 aa16.68■□□□□ 0.26
CLN3-225ENST00000566824 FAM57BQ71RH2 274 aa16.68■□□□□ 0.26
CLN3-225ENST00000566824 KRT77Q7Z794 578 aa16.68■□□□□ 0.26
CLN3-225ENST00000566824 C1orf174Q8IYL3 243 aa16.68■□□□□ 0.26
CLN3-225ENST00000566824 OR5AS1Q8N127 324 aa16.68■□□□□ 0.26
CLN3-225ENST00000566824 LGALS12Q96DT0 336 aa16.68■□□□□ 0.26
CLN3-225ENST00000566824 MSL2Q9HCI7 577 aa16.68■□□□□ 0.26
CLN3-225ENST00000566824 MRM2Q9UI43 246 aaKnown RBP16.68■□□□□ 0.26
CLN3-225ENST00000566824 RRP15Q9Y3B9 282 aaKnown RBP16.68■□□□□ 0.26
CLN3-225ENST00000566824 ZNF670-ZNF695F2Z2N8 137 aa16.67■□□□□ 0.26
CLN3-225ENST00000566824 LYNX1G3V0Z9 82 aa16.67■□□□□ 0.26
CLN3-225ENST00000566824 J3QW42 95 aa16.67■□□□□ 0.26
CLN3-225ENST00000566824 TIMM8AO60220 97 aaPredicted RBP16.67■□□□□ 0.26
CLN3-225ENST00000566824 F12P00748 615 aaPredicted RBP16.67■□□□□ 0.26
CLN3-225ENST00000566824 ANXA2P07355 339 aaKnown RBP16.67■□□□□ 0.26
CLN3-225ENST00000566824 LYNX1P0DP58 116 aa16.67■□□□□ 0.26
CLN3-225ENST00000566824 SELENOVP59797 346 aa16.67■□□□□ 0.26
CLN3-225ENST00000566824 ISL1P61371 349 aa16.67■□□□□ 0.26
CLN3-225ENST00000566824 ROM1Q03395 351 aa16.67■□□□□ 0.26
CLN3-225ENST00000566824 ZNF85Q03923 595 aa16.67■□□□□ 0.26
CLN3-225ENST00000566824 TMED1Q13445 227 aa16.67■□□□□ 0.26
CLN3-225ENST00000566824 C6orf52Q5T4I8 152 aa16.67■□□□□ 0.26
CLN3-225ENST00000566824 TTC23Q5W5X9 447 aa16.67■□□□□ 0.26
CLN3-225ENST00000566824 LAIR2Q6ISS4 152 aa16.67■□□□□ 0.26
CLN3-225ENST00000566824 DNM1P46Q6ZS02 220 aa16.67■□□□□ 0.26
CLN3-225ENST00000566824 USP51Q70EK9 711 aa16.67■□□□□ 0.26
CLN3-225ENST00000566824 RHOUQ7L0Q8 258 aa16.67■□□□□ 0.26
CLN3-225ENST00000566824 HIST2H2ABQ8IUE6 130 aaPredicted RBP16.67■□□□□ 0.26
CLN3-225ENST00000566824 ZNF525Q8N782 197 aa16.67■□□□□ 0.26
CLN3-225ENST00000566824 OR10H4Q8NGA5 316 aa16.67■□□□□ 0.26
CLN3-225ENST00000566824 OR5L1Q8NGL2 311 aa16.67■□□□□ 0.26
CLN3-225ENST00000566824 PPP1R14AQ96A00 147 aa16.67■□□□□ 0.26
CLN3-225ENST00000566824 Q96MF0 132 aa16.67■□□□□ 0.26
CLN3-225ENST00000566824 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP16.67■□□□□ 0.26
CLN3-225ENST00000566824 TMEM14AQ9Y6G1 99 aa16.67■□□□□ 0.26
CLN3-225ENST00000566824 F8P00451 2351 aa16.67■□□□□ 0.26
CLN3-225ENST00000566824 TRIM64A6NGJ6 449 aa16.66■□□□□ 0.26
CLN3-225ENST00000566824 TRIM64BA6NI03 449 aa16.66■□□□□ 0.26
CLN3-225ENST00000566824 C17orf100A8MU93 164 aa16.66■□□□□ 0.26
CLN3-225ENST00000566824 HPXP02790 462 aa16.66■□□□□ 0.26
CLN3-225ENST00000566824 DBTP11182 482 aaKnown RBP16.66■□□□□ 0.26
CLN3-225ENST00000566824 RAC2P15153 192 aa16.66■□□□□ 0.26
CLN3-225ENST00000566824 TUBG1P23258 451 aa16.66■□□□□ 0.26
CLN3-225ENST00000566824 RBMXP38159 391 aaKnown RBP16.66■□□□□ 0.26
CLN3-225ENST00000566824 MFGE8Q08431 387 aaPredicted RBP16.66■□□□□ 0.26
CLN3-225ENST00000566824 ZNF684Q5T5D7 378 aa16.66■□□□□ 0.26
CLN3-225ENST00000566824 SHEQ5VZ18 495 aa16.66■□□□□ 0.26
CLN3-225ENST00000566824 SPNS3Q6ZMD2 512 aa16.66■□□□□ 0.26
CLN3-225ENST00000566824 ASB17Q8WXJ9 295 aa16.66■□□□□ 0.26
CLN3-225ENST00000566824 TFAP2CQ92754 450 aa16.66■□□□□ 0.26
CLN3-225ENST00000566824 SGK3Q96BR1 496 aa16.66■□□□□ 0.26
CLN3-225ENST00000566824 COG8Q96MW5 612 aa16.66■□□□□ 0.26
CLN3-225ENST00000566824 TUBG2Q9NRH3 451 aa16.66■□□□□ 0.26
CLN3-225ENST00000566824 IKZF2Q9UKS7 526 aa16.66■□□□□ 0.26
CLN3-225ENST00000566824 EXOGQ9Y2C4 368 aaKnown RBP16.66■□□□□ 0.26
CLN3-225ENST00000566824 TBX1O43435 398 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms