RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 IFNL4K9M1U5 179 aa17.47■□□□□ 0.39
CLN3-219ENST00000565778 GNGT2O14610 69 aa17.47■□□□□ 0.39
CLN3-219ENST00000565778 ACOT8O14734 319 aa17.47■□□□□ 0.39
CLN3-219ENST00000565778 FOXH1O75593 365 aa17.47■□□□□ 0.39
CLN3-219ENST00000565778 GYPBP06028 91 aa17.47■□□□□ 0.39
CLN3-219ENST00000565778 GATA3P23771 443 aa17.47■□□□□ 0.39
CLN3-219ENST00000565778 PRSS12P56730 875 aa17.47■□□□□ 0.39
CLN3-219ENST00000565778 BTG1P62324 171 aa17.47■□□□□ 0.39
CLN3-219ENST00000565778 CRMP1Q14194 572 aa17.47■□□□□ 0.39
CLN3-219ENST00000565778 GK2Q14410 553 aaPredicted RBP17.47■□□□□ 0.39
CLN3-219ENST00000565778 TMEM155Q4W5P6 130 aa17.47■□□□□ 0.39
CLN3-219ENST00000565778 LYPD4Q6UWN0 246 aa17.47■□□□□ 0.39
CLN3-219ENST00000565778 ZNF511Q8NB15 262 aa17.47■□□□□ 0.39
CLN3-219ENST00000565778 OR10G2Q8NGC3 310 aa17.47■□□□□ 0.39
CLN3-219ENST00000565778 ZNF420Q8TAQ5 688 aaPredicted RBP17.47■□□□□ 0.39
CLN3-219ENST00000565778 GIPC3Q8TF64 312 aa17.47■□□□□ 0.39
CLN3-219ENST00000565778 RBM4Q9BWF3 364 aaKnown RBP17.47■□□□□ 0.39
CLN3-219ENST00000565778 C7orf69Q9H7B7 122 aa17.47■□□□□ 0.39
CLN3-219ENST00000565778 F5H5P2 479 aa17.46■□□□□ 0.39
CLN3-219ENST00000565778 TMEM178BH3BS89 294 aa17.46■□□□□ 0.39
CLN3-219ENST00000565778 M0R135 149 aa17.46■□□□□ 0.39
CLN3-219ENST00000565778 ZNF593O00488 134 aaPredicted RBP17.46■□□□□ 0.39
CLN3-219ENST00000565778 IFNGP01579 166 aa17.46■□□□□ 0.39
CLN3-219ENST00000565778 SPARCP09486 303 aa17.46■□□□□ 0.39
CLN3-219ENST00000565778 SLC6A9P48067 706 aa17.46■□□□□ 0.39
CLN3-219ENST00000565778 ZMYND11Q15326 602 aa17.46■□□□□ 0.39
CLN3-219ENST00000565778 TAF13Q15543 124 aa17.46■□□□□ 0.39
CLN3-219ENST00000565778 PGAP1Q75T13 922 aa17.46■□□□□ 0.39
CLN3-219ENST00000565778 DCXRQ7Z4W1 244 aa17.46■□□□□ 0.39
CLN3-219ENST00000565778 OR10S1Q8NGN2 331 aa17.46■□□□□ 0.39
CLN3-219ENST00000565778 SPRYD4Q8WW59 207 aaPredicted RBP17.46■□□□□ 0.39
CLN3-219ENST00000565778 ZNF799Q96GE5 643 aa17.46■□□□□ 0.39
CLN3-219ENST00000565778 FEVQ99581 238 aa17.46■□□□□ 0.39
CLN3-219ENST00000565778 NIPSNAP1Q9BPW8 284 aa17.46■□□□□ 0.39
CLN3-219ENST00000565778 PATZ1Q9HBE1 687 aaKnown RBP17.46■□□□□ 0.39
CLN3-219ENST00000565778 CENPMQ9NSP4 180 aa17.46■□□□□ 0.39
CLN3-219ENST00000565778 DYSFO75923 2080 aa17.46■□□□□ 0.39
CLN3-219ENST00000565778 RIIAD1A6NNX1 92 aa17.45■□□□□ 0.38
CLN3-219ENST00000565778 H3BN98 237 aa17.45■□□□□ 0.38
CLN3-219ENST00000565778 MLNRO43193 412 aa17.45■□□□□ 0.38
CLN3-219ENST00000565778 HLA-DPB1P04440 258 aa17.45■□□□□ 0.38
CLN3-219ENST00000565778 CLUP10909 449 aa17.45■□□□□ 0.38
CLN3-219ENST00000565778 SPI1P17947 270 aa17.45■□□□□ 0.38
CLN3-219ENST00000565778 ZFP36P26651 326 aaKnown RBP17.45■□□□□ 0.38
CLN3-219ENST00000565778 ENTPD1P49961 510 aa17.45■□□□□ 0.38
CLN3-219ENST00000565778 SLC25A1P53007 311 aa17.45■□□□□ 0.38
CLN3-219ENST00000565778 GK3PQ14409 553 aa17.45■□□□□ 0.38
CLN3-219ENST00000565778 TRPM8Q7Z2W7 1104 aa17.45■□□□□ 0.38
CLN3-219ENST00000565778 MRPL21Q7Z2W9 205 aaKnown RBP17.45■□□□□ 0.38
CLN3-219ENST00000565778 ADGRG5Q8IZF4 528 aa17.45■□□□□ 0.38
CLN3-219ENST00000565778 NANPQ8TBE9 248 aa17.45■□□□□ 0.38
CLN3-219ENST00000565778 BCAS4Q8TDM0 211 aa17.45■□□□□ 0.38
CLN3-219ENST00000565778 CANT1Q8WVQ1 401 aa17.45■□□□□ 0.38
CLN3-219ENST00000565778 OTULINQ96BN8 352 aa17.45■□□□□ 0.38
CLN3-219ENST00000565778 SIGLEC11Q96RL6 698 aa17.45■□□□□ 0.38
CLN3-219ENST00000565778 N6AMT1Q9Y5N5 214 aa17.45■□□□□ 0.38
CLN3-219ENST00000565778 COMMD3-BMI1R4GMX3 469 aa17.45■□□□□ 0.38
CLN3-219ENST00000565778 A0A0A6YYJ9 748 aa17.44■□□□□ 0.38
CLN3-219ENST00000565778 AQP12BA6NM10 295 aa17.44■□□□□ 0.38
CLN3-219ENST00000565778 GYG2O15488 501 aa17.44■□□□□ 0.38
CLN3-219ENST00000565778 ZNF205O95201 554 aa17.44■□□□□ 0.38
CLN3-219ENST00000565778 MDH2P40926 338 aaKnown RBP17.44■□□□□ 0.38
CLN3-219ENST00000565778 MMP16P51512 607 aa17.44■□□□□ 0.38
CLN3-219ENST00000565778 PRKXP51817 358 aa17.44■□□□□ 0.38
CLN3-219ENST00000565778 CD300LDQ6UXZ3 194 aa17.44■□□□□ 0.38
CLN3-219ENST00000565778 MOGAT3Q86VF5 341 aa17.44■□□□□ 0.38
CLN3-219ENST00000565778 AQP12AQ8IXF9 295 aa17.44■□□□□ 0.38
CLN3-219ENST00000565778 OR6K6Q8NGW6 343 aa17.44■□□□□ 0.38
CLN3-219ENST00000565778 TEX47Q8TBZ9 253 aa17.44■□□□□ 0.38
CLN3-219ENST00000565778 ZNF418Q8TF45 676 aaPredicted RBP17.44■□□□□ 0.38
CLN3-219ENST00000565778 SLAMF6Q96DU3 332 aa17.44■□□□□ 0.38
CLN3-219ENST00000565778 COPS4Q9BT78 406 aa17.44■□□□□ 0.38
CLN3-219ENST00000565778 NMNAT2Q9BZQ4 307 aa17.44■□□□□ 0.38
CLN3-219ENST00000565778 DDX28Q9NUL7 540 aaKnown RBP17.44■□□□□ 0.38
CLN3-219ENST00000565778 DHRS12A0PJE2 317 aa17.43■□□□□ 0.38
CLN3-219ENST00000565778 LRRC30A6NM36 301 aa17.43■□□□□ 0.38
CLN3-219ENST00000565778 RGS9O75916 674 aaPredicted RBP17.43■□□□□ 0.38
CLN3-219ENST00000565778 CYB5R3P00387 301 aaPredicted RBP17.43■□□□□ 0.38
CLN3-219ENST00000565778 ZNF3P17036 446 aa17.43■□□□□ 0.38
CLN3-219ENST00000565778 ADRA2CP18825 462 aa17.43■□□□□ 0.38
CLN3-219ENST00000565778 EPHA1P21709 976 aa17.43■□□□□ 0.38
CLN3-219ENST00000565778 BLVRAP53004 296 aa17.43■□□□□ 0.38
CLN3-219ENST00000565778 SNAI3Q3KNW1 292 aa17.43■□□□□ 0.38
CLN3-219ENST00000565778 DRAM2Q6UX65 266 aa17.43■□□□□ 0.38
CLN3-219ENST00000565778 MUC20Q8N307 709 aaPredicted RBP17.43■□□□□ 0.38
CLN3-219ENST00000565778 CMC2Q9NRP2 79 aa17.43■□□□□ 0.38
CLN3-219ENST00000565778 PDP1Q9P0J1 537 aaPredicted RBP17.43■□□□□ 0.38
CLN3-219ENST00000565778 GGT3PA6NGU5 568 aa17.42■□□□□ 0.38
CLN3-219ENST00000565778 VENTXO95231 258 aa17.42■□□□□ 0.38
CLN3-219ENST00000565778 PSKH1P11801 424 aa17.42■□□□□ 0.38
CLN3-219ENST00000565778 POU1F1P28069 291 aa17.42■□□□□ 0.38
CLN3-219ENST00000565778 RAD23AP54725 363 aa17.42■□□□□ 0.38
CLN3-219ENST00000565778 ZNF92Q03936 586 aa17.42■□□□□ 0.38
CLN3-219ENST00000565778 TEX30Q5JUR7 227 aa17.42■□□□□ 0.38
CLN3-219ENST00000565778 C1QL2Q7Z5L3 287 aa17.42■□□□□ 0.38
CLN3-219ENST00000565778 SPATA24Q86W54 205 aa17.42■□□□□ 0.38
CLN3-219ENST00000565778 C1orf87Q8N0U7 546 aa17.42■□□□□ 0.38
CLN3-219ENST00000565778 IQCF1Q8N6M8 205 aa17.42■□□□□ 0.38
CLN3-219ENST00000565778 KCNJ15Q99712 375 aa17.42■□□□□ 0.38
CLN3-219ENST00000565778 MED20Q9H944 212 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms