RNA–Protein interactions for RNA: ENST00000565442.1

CHD9-215, Transcript of chromodomain helicase DNA binding protein 9, human

TSL 2

Gene CHD9, Length 703 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD9-215	ENST00000565442	PLPP1	O14494	284 aa		2.57	□□□□□ -2
CHD9-215	ENST00000565442	BCKDK	O14874	412 aa		2.57	□□□□□ -2
CHD9-215	ENST00000565442	REM1	O75628	298 aa		2.57	□□□□□ -2
CHD9-215	ENST00000565442	SEMA3D	O95025	777 aa		2.57	□□□□□ -2
CHD9-215	ENST00000565442	HLA-H	P01893	362 aa		2.57	□□□□□ -2
CHD9-215	ENST00000565442	ASGR1	P07306	291 aa		2.57	□□□□□ -2
CHD9-215	ENST00000565442	ZNF286B	P0CG31	522 aa		2.57	□□□□□ -2
CHD9-215	ENST00000565442	RAB4A	P20338	218 aa		2.57	□□□□□ -2
CHD9-215	ENST00000565442	RFC3	P40938	356 aa		2.57	□□□□□ -2
CHD9-215	ENST00000565442	SYNJ2BP	P57105	145 aa		2.57	□□□□□ -2
CHD9-215	ENST00000565442	ZNF121	P58317	390 aa	Predicted RBP	2.57	□□□□□ -2
CHD9-215	ENST00000565442	RPS15A	P62244	130 aa	Known RBP	2.57	□□□□□ -2
CHD9-215	ENST00000565442	GCSAML	Q5JQS6	135 aa		2.57	□□□□□ -2
CHD9-215	ENST00000565442	STUM	Q69YW2	141 aa		2.57	□□□□□ -2
CHD9-215	ENST00000565442	CDKL3	Q8IVW4	592 aa	Predicted RBP	2.57	□□□□□ -2
CHD9-215	ENST00000565442	MICU2	Q8IYU8	434 aa		2.57	□□□□□ -2
CHD9-215	ENST00000565442	ARRDC1	Q8N5I2	433 aa		2.57	□□□□□ -2
CHD9-215	ENST00000565442	COMMD1	Q8N668	190 aa		2.57	□□□□□ -2
CHD9-215	ENST00000565442	ZNF709	Q8N972	641 aa		2.57	□□□□□ -2
CHD9-215	ENST00000565442	OR6N1	Q8NGY5	312 aa		2.57	□□□□□ -2
CHD9-215	ENST00000565442	L3HYPDH	Q96EM0	354 aa		2.57	□□□□□ -2
CHD9-215	ENST00000565442	ANP32E	Q9BTT0	268 aa		2.57	□□□□□ -2
CHD9-215	ENST00000565442	FGF23	Q9GZV9	251 aa	Predicted RBP	2.57	□□□□□ -2
CHD9-215	ENST00000565442	MRPS30	Q9NP92	439 aa	Known RBP	2.57	□□□□□ -2
CHD9-215	ENST00000565442	MYOZ1	Q9NP98	299 aa	Predicted RBP	2.57	□□□□□ -2
CHD9-215	ENST00000565442	SLC17A7	Q9P2U7	560 aa		2.57	□□□□□ -2
CHD9-215	ENST00000565442	IGHV1OR15-9	A0A0B4J2B8	117 aa		2.56	□□□□□ -2
CHD9-215	ENST00000565442	C7orf66	A4D0T2	115 aa		2.56	□□□□□ -2
CHD9-215	ENST00000565442	LRRIQ4	A6NIV6	560 aa		2.56	□□□□□ -2
CHD9-215	ENST00000565442	COLCA2	A8K830	154 aa		2.56	□□□□□ -2
CHD9-215	ENST00000565442	BPY2	O14599	106 aa		2.56	□□□□□ -2
CHD9-215	ENST00000565442	NMT2	O60551	498 aa		2.56	□□□□□ -2
CHD9-215	ENST00000565442	CCNK	O75909	580 aa		2.56	□□□□□ -2
CHD9-215	ENST00000565442	HPRT1	P00492	218 aa		2.56	□□□□□ -2
CHD9-215	ENST00000565442	TCP1	P17987	556 aa	Known RBP	2.56	□□□□□ -2
CHD9-215	ENST00000565442	USF1	P22415	310 aa	Predicted RBP	2.56	□□□□□ -2
CHD9-215	ENST00000565442	OPRK1	P41145	380 aa		2.56	□□□□□ -2
CHD9-215	ENST00000565442	TNFSF9	P41273	254 aa		2.56	□□□□□ -2
CHD9-215	ENST00000565442	SERPINB8	P50452	374 aa		2.56	□□□□□ -2
CHD9-215	ENST00000565442	CDK5	Q00535	292 aa		2.56	□□□□□ -2
CHD9-215	ENST00000565442	RBMY1F	Q15415	496 aa	Known RBP	2.56	□□□□□ -2
CHD9-215	ENST00000565442	MPV17L2	Q567V2	206 aa		2.56	□□□□□ -2
CHD9-215	ENST00000565442	ADNP2	Q6IQ32	1131 aa		2.56	□□□□□ -2
CHD9-215	ENST00000565442	ZNF880	Q6PDB4	577 aa		2.56	□□□□□ -2
CHD9-215	ENST00000565442	SHISA6	Q6ZSJ9	500 aa		2.56	□□□□□ -2
CHD9-215	ENST00000565442	SLC16A13	Q7RTY0	426 aa		2.56	□□□□□ -2
CHD9-215	ENST00000565442	HORMAD1	Q86X24	394 aa		2.56	□□□□□ -2
CHD9-215	ENST00000565442	CIRBP-AS1	Q8TBR5	109 aa		2.56	□□□□□ -2
CHD9-215	ENST00000565442	ESR2	Q92731	530 aa		2.56	□□□□□ -2
CHD9-215	ENST00000565442	OR10C1	Q96KK4	312 aa		2.56	□□□□□ -2
CHD9-215	ENST00000565442	JSRP1	Q96MG2	331 aa	Predicted RBP	2.56	□□□□□ -2
CHD9-215	ENST00000565442	UQCC2	Q9BRT2	126 aa		2.56	□□□□□ -2
CHD9-215	ENST00000565442	RSPO3	Q9BXY4	272 aa	Predicted RBP	2.56	□□□□□ -2
CHD9-215	ENST00000565442	SLIRP	Q9GZT3	109 aa	Known RBP	2.56	□□□□□ -2
CHD9-215	ENST00000565442	TMEM27	Q9HBJ8	222 aa		2.56	□□□□□ -2
CHD9-215	ENST00000565442	MED4	Q9NPJ6	270 aa		2.56	□□□□□ -2
CHD9-215	ENST00000565442	PXMP2	Q9NR77	195 aa		2.56	□□□□□ -2
CHD9-215	ENST00000565442	IGHV1-69D	A0A0B4J2H0	117 aa		2.55	□□□□□ -2
CHD9-215	ENST00000565442		A6NDN8	102 aa		2.55	□□□□□ -2
CHD9-215	ENST00000565442	NCF1B	A6NI72	391 aa	Predicted RBP	2.55	□□□□□ -2
CHD9-215	ENST00000565442	GABRR3	A8MPY1	467 aa		2.55	□□□□□ -2
CHD9-215	ENST00000565442	NCF1C	A8MVU1	366 aa	Predicted RBP	2.55	□□□□□ -2
CHD9-215	ENST00000565442		H0YJW9	148 aa		2.55	□□□□□ -2
CHD9-215	ENST00000565442	SOCS1	O15524	211 aa		2.55	□□□□□ -2
CHD9-215	ENST00000565442	SLC22A5	O76082	557 aa		2.55	□□□□□ -2
CHD9-215	ENST00000565442	HLA-DQA1	P01909	254 aa		2.55	□□□□□ -2
CHD9-215	ENST00000565442	KRT16	P08779	473 aa		2.55	□□□□□ -2
CHD9-215	ENST00000565442	PGA5	P0DJD9	388 aa		2.55	□□□□□ -2
CHD9-215	ENST00000565442	C1GALT1C1L	P0DN25	315 aa		2.55	□□□□□ -2
CHD9-215	ENST00000565442	SFTPC	P11686	197 aa		2.55	□□□□□ -2
CHD9-215	ENST00000565442	TAS2R46	P59540	309 aa		2.55	□□□□□ -2
CHD9-215	ENST00000565442	RPL23	P62829	140 aa	Known RBP	2.55	□□□□□ -2
CHD9-215	ENST00000565442	CACNG7	P62955	275 aa		2.55	□□□□□ -2
CHD9-215	ENST00000565442	CYP24A1	Q07973	514 aa		2.55	□□□□□ -2
CHD9-215	ENST00000565442	COX19	Q49B96	90 aa		2.55	□□□□□ -2
CHD9-215	ENST00000565442	BEX5	Q5H9J7	111 aa		2.55	□□□□□ -2
CHD9-215	ENST00000565442	ZFP1	Q6P2D0	407 aa		2.55	□□□□□ -2
CHD9-215	ENST00000565442	TTC41P	Q6P2S7	1318 aa		2.55	□□□□□ -2
CHD9-215	ENST00000565442	ZNF547	Q8IVP9	402 aa		2.55	□□□□□ -2
CHD9-215	ENST00000565442	ZNF561	Q8N587	486 aa		2.55	□□□□□ -2
CHD9-215	ENST00000565442	CSGALNACT2	Q8N6G5	542 aa		2.55	□□□□□ -2
CHD9-215	ENST00000565442	ZNF615	Q8N8J6	731 aa		2.55	□□□□□ -2
CHD9-215	ENST00000565442	C8orf31	Q8N9H6	132 aa		2.55	□□□□□ -2
CHD9-215	ENST00000565442	OR52P1P	Q8NH57	321 aa		2.55	□□□□□ -2
CHD9-215	ENST00000565442	OR51F2	Q8NH61	342 aa		2.55	□□□□□ -2
CHD9-215	ENST00000565442	CA5BP1	Q8WTZ4	195 aa		2.55	□□□□□ -2
CHD9-215	ENST00000565442	RPE	Q96AT9	228 aa		2.55	□□□□□ -2
CHD9-215	ENST00000565442	RNF5	Q99942	180 aa		2.55	□□□□□ -2
CHD9-215	ENST00000565442	PCDH11X	Q9BZA7	1347 aa		2.55	□□□□□ -2
CHD9-215	ENST00000565442	IQCG	Q9H095	443 aa	Known RBP	2.55	□□□□□ -2
CHD9-215	ENST00000565442	CAB39	Q9Y376	341 aa	Predicted RBP	2.55	□□□□□ -2
CHD9-215	ENST00000565442	SAR1B	Q9Y6B6	198 aa		2.55	□□□□□ -2
CHD9-215	ENST00000565442	PLA2R1	Q13018	1463 aa		2.54	□□□□□ -2
CHD9-215	ENST00000565442	PTPRT	O14522	1441 aa		2.54	□□□□□ -2
CHD9-215	ENST00000565442	MROH7	Q68CQ1	1323 aa		2.54	□□□□□ -2
CHD9-215	ENST00000565442	KRBOX1	C9JBD0	128 aa		2.54	□□□□□ -2
CHD9-215	ENST00000565442	NDUFC2-KCTD14	E9PQ53	114 aa		2.54	□□□□□ -2
CHD9-215	ENST00000565442	MPZL1	O95297	269 aa		2.54	□□□□□ -2
CHD9-215	ENST00000565442	CCNE2	O96020	404 aa		2.54	□□□□□ -2
CHD9-215	ENST00000565442	OXT	P01178	125 aa		2.54	□□□□□ -2

Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms