RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 FOXRED1Q96CU9 486 aaPredicted RBP11.79□□□□□ -0.52
CLN3-210ENST00000563874 NICN1Q9BSH3 213 aa11.79□□□□□ -0.52
CLN3-210ENST00000563874 SLC5A6Q9Y289 635 aa11.79□□□□□ -0.52
CLN3-210ENST00000563874 KCNK7Q9Y2U2 307 aa11.79□□□□□ -0.52
CLN3-210ENST00000563874 PRELID3BQ9Y3B1 194 aa11.79□□□□□ -0.52
CLN3-210ENST00000563874 LRP4O75096 1905 aa11.79□□□□□ -0.52
CLN3-210ENST00000563874 SIGLEC6O43699 453 aa11.78□□□□□ -0.52
CLN3-210ENST00000563874 MT-ATP6P00846 226 aa11.78□□□□□ -0.52
CLN3-210ENST00000563874 IGKV3-11P04433 115 aa11.78□□□□□ -0.52
CLN3-210ENST00000563874 IFNA6P05013 189 aa11.78□□□□□ -0.52
CLN3-210ENST00000563874 PI3P19957 117 aa11.78□□□□□ -0.52
CLN3-210ENST00000563874 SRSF4Q08170 494 aaKnown RBP11.78□□□□□ -0.52
CLN3-210ENST00000563874 EBPQ15125 230 aaKnown RBP11.78□□□□□ -0.52
CLN3-210ENST00000563874 PLEKHN1Q494U1 663 aaPredicted RBP11.78□□□□□ -0.52
CLN3-210ENST00000563874 ARMC10Q8N2F6 343 aa11.78□□□□□ -0.52
CLN3-210ENST00000563874 BHLHE23Q8NDY6 225 aa11.78□□□□□ -0.52
CLN3-210ENST00000563874 OR13C9Q8NGT0 318 aa11.78□□□□□ -0.52
CLN3-210ENST00000563874 ELP5Q8TE02 316 aa11.78□□□□□ -0.52
CLN3-210ENST00000563874 ADAT3Q96EY9 351 aaPredicted RBP11.78□□□□□ -0.52
CLN3-210ENST00000563874 USB1Q9BQ65 265 aaKnown RBP11.78□□□□□ -0.52
CLN3-210ENST00000563874 ZNF768Q9H5H4 540 aaKnown RBP11.78□□□□□ -0.52
CLN3-210ENST00000563874 CHMP1AQ9HD42 196 aaPredicted RBP11.78□□□□□ -0.52
CLN3-210ENST00000563874 H7C2Y5 167 aa11.78□□□□□ -0.52
CLN3-210ENST00000563874 EFSO43281 561 aa11.78□□□□□ -0.52
CLN3-210ENST00000563874 AHSA1O95433 338 aa11.78□□□□□ -0.52
CLN3-210ENST00000563874 VSIG8P0DPA2 414 aa11.78□□□□□ -0.52
CLN3-210ENST00000563874 GABRA4P48169 554 aa11.78□□□□□ -0.52
CLN3-210ENST00000563874 DLX2Q07687 328 aaPredicted RBP11.78□□□□□ -0.52
CLN3-210ENST00000563874 C1orf100Q5SVJ3 147 aa11.78□□□□□ -0.52
CLN3-210ENST00000563874 HAGHLQ6PII5 290 aaPredicted RBP11.78□□□□□ -0.52
CLN3-210ENST00000563874 SHISA6Q6ZSJ9 500 aa11.78□□□□□ -0.52
CLN3-210ENST00000563874 COX15Q7KZN9 410 aa11.78□□□□□ -0.52
CLN3-210ENST00000563874 CCDC36Q8IYA8 594 aa11.78□□□□□ -0.52
CLN3-210ENST00000563874 SLC26A10Q8NG04 563 aa11.78□□□□□ -0.52
CLN3-210ENST00000563874 OR4K17Q8NGC6 315 aa11.78□□□□□ -0.52
CLN3-210ENST00000563874 ST7LQ8TDW4 575 aa11.78□□□□□ -0.52
CLN3-210ENST00000563874 PHYHIPLQ96FC7 376 aa11.78□□□□□ -0.52
CLN3-210ENST00000563874 ARL5BQ96KC2 179 aa11.78□□□□□ -0.52
CLN3-210ENST00000563874 EMC6Q9BV81 110 aa11.78□□□□□ -0.52
CLN3-210ENST00000563874 MLXQ9UH92 298 aa11.78□□□□□ -0.52
CLN3-210ENST00000563874 A8MVM7 634 aa11.78□□□□□ -0.52
CLN3-210ENST00000563874 NPIPB7O75200 414 aa11.78□□□□□ -0.52
CLN3-210ENST00000563874 H2BFMP0C1H6 154 aa11.78□□□□□ -0.52
CLN3-210ENST00000563874 ABCD3P28288 659 aa11.78□□□□□ -0.52
CLN3-210ENST00000563874 POLR2HP52434 150 aaKnown RBP11.78□□□□□ -0.52
CLN3-210ENST00000563874 NSDHLQ15738 373 aa11.78□□□□□ -0.52
CLN3-210ENST00000563874 RLN3Q8WXF3 142 aa11.78□□□□□ -0.52
CLN3-210ENST00000563874 RRNAD1Q96FB5 475 aaKnown RBP11.78□□□□□ -0.52
CLN3-210ENST00000563874 RAB22AQ9UL26 194 aa11.78□□□□□ -0.52
CLN3-210ENST00000563874 RHBDD3Q9Y3P4 386 aa11.78□□□□□ -0.52
CLN3-210ENST00000563874 ALG1L2C9J202 215 aa11.77□□□□□ -0.53
CLN3-210ENST00000563874 F8W036 122 aa11.77□□□□□ -0.53
CLN3-210ENST00000563874 LINC01387J3KSC0 135 aa11.77□□□□□ -0.53
CLN3-210ENST00000563874 IL2RAP01589 272 aa11.77□□□□□ -0.53
CLN3-210ENST00000563874 PSMB6P28072 239 aa11.77□□□□□ -0.53
CLN3-210ENST00000563874 CRABP1P29762 137 aa11.77□□□□□ -0.53
CLN3-210ENST00000563874 SLC26A5P58743 744 aa11.77□□□□□ -0.53
CLN3-210ENST00000563874 BLOC1S1P78537 153 aa11.77□□□□□ -0.53
CLN3-210ENST00000563874 FLI1Q01543 452 aaPredicted RBP11.77□□□□□ -0.53
CLN3-210ENST00000563874 ZNF813Q6ZN06 617 aa11.77□□□□□ -0.53
CLN3-210ENST00000563874 NUP54Q7Z3B4 507 aa11.77□□□□□ -0.53
CLN3-210ENST00000563874 LYPD6Q86Y78 171 aa11.77□□□□□ -0.53
CLN3-210ENST00000563874 PIK3IP1Q96FE7 263 aa11.77□□□□□ -0.53
CLN3-210ENST00000563874 ZNF175Q9Y473 711 aa11.77□□□□□ -0.53
CLN3-210ENST00000563874 MED12Q93074 2177 aa11.77□□□□□ -0.53
CLN3-210ENST00000563874 ATG2AQ2TAZ0 1938 aa11.77□□□□□ -0.53
CLN3-210ENST00000563874 LOC390937A0A1W2PQ73 354 aa11.77□□□□□ -0.53
CLN3-210ENST00000563874 ADAP1O75689 374 aa11.77□□□□□ -0.53
CLN3-210ENST00000563874 CRHP06850 196 aa11.77□□□□□ -0.53
CLN3-210ENST00000563874 POU3F1Q03052 451 aaPredicted RBP11.77□□□□□ -0.53
CLN3-210ENST00000563874 SLC9A3R2Q15599 337 aa11.77□□□□□ -0.53
CLN3-210ENST00000563874 TMEM200AQ86VY9 491 aa11.77□□□□□ -0.53
CLN3-210ENST00000563874 ZNF101Q8IZC7 436 aa11.77□□□□□ -0.53
CLN3-210ENST00000563874 SVIPQ8NHG7 77 aa11.77□□□□□ -0.53
CLN3-210ENST00000563874 TLNRD1Q9H1K6 362 aa11.77□□□□□ -0.53
CLN3-210ENST00000563874 PDE7BQ9NP56 450 aa11.77□□□□□ -0.53
CLN3-210ENST00000563874 CUTCQ9NTM9 273 aa11.77□□□□□ -0.53
CLN3-210ENST00000563874 SLC2A8Q9NY64 477 aa11.77□□□□□ -0.53
CLN3-210ENST00000563874 A0A0A6YYH2 397 aa11.76□□□□□ -0.53
CLN3-210ENST00000563874 A6NJ64 397 aa11.76□□□□□ -0.53
CLN3-210ENST00000563874 SSX5O60225 188 aa11.76□□□□□ -0.53
CLN3-210ENST00000563874 NPY4RP50391 375 aa11.76□□□□□ -0.53
CLN3-210ENST00000563874 AWAT2Q6E213 333 aa11.76□□□□□ -0.53
CLN3-210ENST00000563874 SVBPQ8N300 66 aa11.76□□□□□ -0.53
CLN3-210ENST00000563874 ZNF248Q8NDW4 579 aa11.76□□□□□ -0.53
CLN3-210ENST00000563874 THAP3Q8WTV1 239 aaPredicted RBP11.76□□□□□ -0.53
CLN3-210ENST00000563874 CPNE2Q96FN4 548 aaPredicted RBP11.76□□□□□ -0.53
CLN3-210ENST00000563874 NUDT22Q9BRQ3 303 aa11.76□□□□□ -0.53
CLN3-210ENST00000563874 DUSP15Q9H1R2 295 aaPredicted RBP11.76□□□□□ -0.53
CLN3-210ENST00000563874 MTIF3Q9H2K0 278 aaKnown RBP11.76□□□□□ -0.53
CLN3-210ENST00000563874 OR2S2Q9NQN1 319 aa11.76□□□□□ -0.53
CLN3-210ENST00000563874 SHISA8B8ZZ34 492 aa11.76□□□□□ -0.53
CLN3-210ENST00000563874 NPIPA5E9PKD4 350 aa11.76□□□□□ -0.53
CLN3-210ENST00000563874 SYT7O43581 403 aa11.76□□□□□ -0.53
CLN3-210ENST00000563874 NUDT21O43809 227 aaKnown RBP11.76□□□□□ -0.53
CLN3-210ENST00000563874 TSPAN2O60636 221 aa11.76□□□□□ -0.53
CLN3-210ENST00000563874 ZNF217O75362 1048 aa11.76□□□□□ -0.53
CLN3-210ENST00000563874 SLC2A1P11166 492 aa11.76□□□□□ -0.53
CLN3-210ENST00000563874 SCRN3Q0VDG4 424 aa11.76□□□□□ -0.53
CLN3-210ENST00000563874 HYAL1Q12794 435 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms