RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 LRP5LA4QPB2 252 aa11.38□□□□□ -0.59
CLK3-213ENST00000563842 LMX1BO60663 402 aa11.38□□□□□ -0.59
CLK3-213ENST00000563842 CRLF1O75462 422 aa11.38□□□□□ -0.59
CLK3-213ENST00000563842 OTX1P32242 354 aaPredicted RBP11.38□□□□□ -0.59
CLK3-213ENST00000563842 RPS27P42677 84 aaKnown RBP11.38□□□□□ -0.59
CLK3-213ENST00000563842 GRB2P62993 217 aaKnown RBP11.38□□□□□ -0.59
CLK3-213ENST00000563842 EIF2B1Q14232 305 aaKnown RBP11.38□□□□□ -0.59
CLK3-213ENST00000563842 SNAPC1Q16533 368 aa11.38□□□□□ -0.59
CLK3-213ENST00000563842 TMEM255AQ5JRV8 349 aa11.38□□□□□ -0.59
CLK3-213ENST00000563842 PLBD1Q6P4A8 553 aa11.38□□□□□ -0.59
CLK3-213ENST00000563842 LYPD4Q6UWN0 246 aa11.38□□□□□ -0.59
CLK3-213ENST00000563842 AMIGO2Q86SJ2 522 aa11.38□□□□□ -0.59
CLK3-213ENST00000563842 OR8G5Q8NG78 346 aa11.38□□□□□ -0.59
CLK3-213ENST00000563842 OR2Z1Q8NG97 314 aa11.38□□□□□ -0.59
CLK3-213ENST00000563842 OR13G1Q8NGZ3 307 aa11.38□□□□□ -0.59
CLK3-213ENST00000563842 GTF3AQ92664 365 aaKnown RBP11.38□□□□□ -0.59
CLK3-213ENST00000563842 RAB1CQ92928 201 aa11.38□□□□□ -0.59
CLK3-213ENST00000563842 CENPNQ96H22 339 aaPredicted RBP11.38□□□□□ -0.59
CLK3-213ENST00000563842 KCNJ15Q99712 375 aa11.38□□□□□ -0.59
CLK3-213ENST00000563842 OSBPL10Q9BXB5 764 aa11.38□□□□□ -0.59
CLK3-213ENST00000563842 MED20Q9H944 212 aa11.38□□□□□ -0.59
CLK3-213ENST00000563842 MARCH7Q9H992 704 aa11.38□□□□□ -0.59
CLK3-213ENST00000563842 IL19Q9UHD0 177 aa11.38□□□□□ -0.59
CLK3-213ENST00000563842 IQCF6A8MYZ5 107 aa11.37□□□□□ -0.59
CLK3-213ENST00000563842 IFNL4K9M1U5 179 aa11.37□□□□□ -0.59
CLK3-213ENST00000563842 TGFAP01135 160 aa11.37□□□□□ -0.59
CLK3-213ENST00000563842 ZNF16P17020 682 aaPredicted RBP11.37□□□□□ -0.59
CLK3-213ENST00000563842 HSD11B1P28845 292 aa11.37□□□□□ -0.59
CLK3-213ENST00000563842 RPS7P62081 194 aaKnown RBP11.37□□□□□ -0.59
CLK3-213ENST00000563842 HLXQ14774 488 aaPredicted RBP11.37□□□□□ -0.59
CLK3-213ENST00000563842 PTGES3Q15185 160 aaKnown RBP11.37□□□□□ -0.59
CLK3-213ENST00000563842 TRIP10Q15642 601 aa11.37□□□□□ -0.59
CLK3-213ENST00000563842 KLHL12Q53G59 568 aa11.37□□□□□ -0.59
CLK3-213ENST00000563842 TMEM236Q5W0B7 351 aa11.37□□□□□ -0.59
CLK3-213ENST00000563842 OR2T2Q6IF00 324 aa11.37□□□□□ -0.59
CLK3-213ENST00000563842 ZFP1Q6P2D0 407 aa11.37□□□□□ -0.59
CLK3-213ENST00000563842 PGAP1Q75T13 922 aa11.37□□□□□ -0.59
CLK3-213ENST00000563842 CXXC5Q7LFL8 322 aaKnown RBP11.37□□□□□ -0.59
CLK3-213ENST00000563842 MRPL21Q7Z2W9 205 aaKnown RBP11.37□□□□□ -0.59
CLK3-213ENST00000563842 DPY19L4Q7Z388 723 aa11.37□□□□□ -0.59
CLK3-213ENST00000563842 CPOQ8IVL8 374 aa11.37□□□□□ -0.59
CLK3-213ENST00000563842 OR5AS1Q8N127 324 aa11.37□□□□□ -0.59
CLK3-213ENST00000563842 ZNF283Q8N7M2 679 aa11.37□□□□□ -0.59
CLK3-213ENST00000563842 ZNF454Q8N9F8 522 aa11.37□□□□□ -0.59
CLK3-213ENST00000563842 LINC01356Q8N9X3 169 aa11.37□□□□□ -0.59
CLK3-213ENST00000563842 OR10S1Q8NGN2 331 aa11.37□□□□□ -0.59
CLK3-213ENST00000563842 ST7LQ8TDW4 575 aa11.37□□□□□ -0.59
CLK3-213ENST00000563842 LRTOMTQ8WZ04 291 aa11.37□□□□□ -0.59
CLK3-213ENST00000563842 CCL17Q92583 94 aa11.37□□□□□ -0.59
CLK3-213ENST00000563842 MSI2Q96DH6 328 aaKnown RBP11.37□□□□□ -0.59
CLK3-213ENST00000563842 GABARAPL1Q9H0R8 117 aa11.37□□□□□ -0.59
CLK3-213ENST00000563842 OPA3Q9H6K4 179 aa11.37□□□□□ -0.59
CLK3-213ENST00000563842 TMEM100Q9NV29 134 aa11.37□□□□□ -0.59
CLK3-213ENST00000563842 TVP23BQ9NYZ1 205 aa11.37□□□□□ -0.59
CLK3-213ENST00000563842 LPAR3Q9UBY5 353 aa11.37□□□□□ -0.59
CLK3-213ENST00000563842 CDC42EP3Q9UKI2 254 aa11.37□□□□□ -0.59
CLK3-213ENST00000563842 NOP16Q9Y3C1 178 aaKnown RBP11.37□□□□□ -0.59
CLK3-213ENST00000563842 JMJD1CQ15652 2540 aa11.37□□□□□ -0.59
CLK3-213ENST00000563842 ANPEPP15144 967 aa11.36□□□□□ -0.59
CLK3-213ENST00000563842 PCMT1P22061 227 aa11.36□□□□□ -0.59
CLK3-213ENST00000563842 SRP9P49458 86 aaKnown RBP11.36□□□□□ -0.59
CLK3-213ENST00000563842 PRKXP51817 358 aa11.36□□□□□ -0.59
CLK3-213ENST00000563842 ACTR3P61158 418 aa11.36□□□□□ -0.59
CLK3-213ENST00000563842 GK2Q14410 553 aaPredicted RBP11.36□□□□□ -0.59
CLK3-213ENST00000563842 CHRFAM7AQ494W8 412 aa11.36□□□□□ -0.59
CLK3-213ENST00000563842 LCN1P1Q5VSP4 162 aa11.36□□□□□ -0.59
CLK3-213ENST00000563842 KDM4DQ6B0I6 523 aa11.36□□□□□ -0.59
CLK3-213ENST00000563842 Q6ZR03 302 aa11.36□□□□□ -0.59
CLK3-213ENST00000563842 NAA40Q86UY6 237 aa11.36□□□□□ -0.59
CLK3-213ENST00000563842 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.36□□□□□ -0.59
CLK3-213ENST00000563842 TIGD4Q8IY51 512 aa11.36□□□□□ -0.59
CLK3-213ENST00000563842 CLDND2Q8NHS1 167 aa11.36□□□□□ -0.59
CLK3-213ENST00000563842 RNF133Q8WVZ7 376 aa11.36□□□□□ -0.59
CLK3-213ENST00000563842 RAB39BQ96DA2 213 aa11.36□□□□□ -0.59
CLK3-213ENST00000563842 ZMYND19Q96E35 227 aaPredicted RBP11.36□□□□□ -0.59
CLK3-213ENST00000563842 C1orf159Q96HA4 380 aa11.36□□□□□ -0.59
CLK3-213ENST00000563842 SLC30A2Q9BRI3 323 aa11.36□□□□□ -0.59
CLK3-213ENST00000563842 ABHD6Q9BV23 337 aa11.36□□□□□ -0.59
CLK3-213ENST00000563842 SLC22A4Q9H015 551 aa11.36□□□□□ -0.59
CLK3-213ENST00000563842 H2AFY2Q9P0M6 372 aaPredicted RBP11.36□□□□□ -0.59
CLK3-213ENST00000563842 B4DSR2 109 aa11.35□□□□□ -0.59
CLK3-213ENST00000563842 XRCC2O43543 280 aa11.35□□□□□ -0.59
CLK3-213ENST00000563842 LYNP07948 512 aa11.35□□□□□ -0.59
CLK3-213ENST00000563842 H2BFMP0C1H6 154 aa11.35□□□□□ -0.59
CLK3-213ENST00000563842 HNF1AP20823 631 aa11.35□□□□□ -0.59
CLK3-213ENST00000563842 IGFBP5P24593 272 aa11.35□□□□□ -0.59
CLK3-213ENST00000563842 RAD23AP54725 363 aa11.35□□□□□ -0.59
CLK3-213ENST00000563842 CDH15P55291 814 aa11.35□□□□□ -0.59
CLK3-213ENST00000563842 MVKQ03426 396 aa11.35□□□□□ -0.59
CLK3-213ENST00000563842 OTOSQ8NHW6 89 aa11.35□□□□□ -0.59
CLK3-213ENST00000563842 SPRYD4Q8WW59 207 aaPredicted RBP11.35□□□□□ -0.59
CLK3-213ENST00000563842 RAB3IPQ96QF0 476 aaPredicted RBP11.35□□□□□ -0.59
CLK3-213ENST00000563842 OR2V2Q96R30 315 aa11.35□□□□□ -0.59
CLK3-213ENST00000563842 RBM4BQ9BQ04 359 aaKnown RBP11.35□□□□□ -0.59
CLK3-213ENST00000563842 REPIN1Q9BWE0 567 aaKnown RBP11.35□□□□□ -0.59
CLK3-213ENST00000563842 BEX2Q9BXY8 128 aa11.35□□□□□ -0.59
CLK3-213ENST00000563842 SHARPINQ9H0F6 387 aa11.35□□□□□ -0.59
CLK3-213ENST00000563842 SEMA6AQ9H2E6 1030 aa11.35□□□□□ -0.59
CLK3-213ENST00000563842 NIPAL2Q9H841 368 aa11.35□□□□□ -0.59
CLK3-213ENST00000563842 PPP1R3CQ9UQK1 317 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 166 ms