RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 USP43Q70EL4 1123 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 PGAP1Q75T13 922 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 TIPARPQ7Z3E1 657 aaKnown RBP4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 CROCCP2Q86T23 111 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 ABHD12Q8N2K0 398 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 BPIFB2Q8N4F0 458 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 C15orf54Q8N8G6 183 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 OR1K1Q8NGR3 316 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 OR5K2Q8NHB8 316 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 ACTL9Q8TC94 416 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 DTD1Q8TEA8 209 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 RNF133Q8WVZ7 376 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 CDS1Q92903 461 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 C2orf48Q96LS8 159 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 MS4A4EQ96PG1 132 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 MCCC1Q96RQ3 725 aaPredicted RBP4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 PSD2Q9BQI7 771 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 SLC35A5Q9BS91 424 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 SLC25A33Q9BSK2 321 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 COPS4Q9BT78 406 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 TMEM59Q9BXS4 323 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 REEP4Q9H6H4 257 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 ARMC7Q9H6L4 198 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 PLAC1Q9HBJ0 212 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 FZD3Q9NPG1 666 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 ESM1Q9NQ30 184 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 IFT46Q9NQC8 304 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 PAK1IP1Q9NWT1 392 aaPredicted RBP4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 CLN6Q9NWW5 311 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 TEX10Q9NXF1 929 aaPredicted RBP4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 THUMPD1Q9NXG2 353 aaKnown RBP4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 EIF3KQ9UBQ5 218 aaKnown RBP4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 CLEC4EQ9ULY5 219 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 MRPS18BQ9Y676 258 aaKnown RBP4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 CSNK1G3Q9Y6M4 447 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 PTPRDP23468 1912 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 TSC2P49815 1807 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 PATJQ8NI35 1801 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 MYO10Q9HD67 2058 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 A0A0D9SEW6 157 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 hCG_38984A0A1B0GV85 526 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 SMIM23A6NLE4 172 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 ZNF724A8MTY0 619 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 TRDCB7Z8K6 153 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 TMX2-CTNND1H3BSU7 103 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 ATP8B1O43520 1251 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 RGS14O43566 566 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 GAGE7O76087 117 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 NDUFB8O95169 186 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 LYPD3O95274 346 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 UTS2O95399 124 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 TNFP01375 233 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 IFNA5P01569 189 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 CRYABP02511 175 aaKnown RBP4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 SERPINA5P05154 406 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 HOXC4P09017 264 aaPredicted RBP4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 GAGE12FP0CL80 117 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 GAGE12GP0CL81 117 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 GAGE12IP0CL82 117 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 ADRB3P13945 408 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 ZP3P21754 424 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 CFL1P23528 166 aaKnown RBP4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 CD38P28907 300 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 FGF9P31371 208 aaPredicted RBP4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 PHBP35232 272 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 RFC3P40938 356 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 PSMD8P48556 350 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 EMDP50402 254 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 NKX2-5P52952 324 aaPredicted RBP4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 LIM2P55344 173 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 TUBA4AP68366 448 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 BLOC1S1P78537 153 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 CDC20Q12834 499 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 GAGE1Q13065 139 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 GAGE4Q13068 117 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 MED21Q13503 144 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 NAB1Q13506 487 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 GGTLC2Q14390 218 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 OXA1LQ15070 435 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 ELOCQ15369 112 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 TAL2Q16559 108 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 EIPR1Q53HC9 387 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 ACTL10Q5JWF8 245 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 TIMM23BQ5SRD1 257 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 C9orf64Q5T6V5 341 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 NCBP2-AS2Q69YL0 99 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 THOC7Q6I9Y2 204 aaKnown RBP4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 OR8G2PQ6IF36 304 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 FAM199XQ6PEV8 388 aaPredicted RBP4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 SSX6Q7RTT6 188 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 CMC1Q7Z7K0 106 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 HORMAD1Q86X24 394 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 IFT20Q8IY31 132 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 STK40Q8N2I9 435 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 IQCF1Q8N6M8 205 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 RBMXL3Q8N7X1 1067 aaKnown RBP4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 OR2A12Q8NGT7 310 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 OR6K2Q8NGY2 324 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 OR1L3Q8NH93 324 aa4.36□□□□□ -1.71
VPS35P1-201ENST00000563400 BLOC1S5Q8TDH9 187 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms