RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 HLA-DPB1P04440 258 aa13.62□□□□□ -0.23
CLN3-208ENST00000561505 CRABP1P29762 137 aa13.62□□□□□ -0.23
CLN3-208ENST00000561505 ECH1Q13011 328 aa13.62□□□□□ -0.23
CLN3-208ENST00000561505 CD276Q5ZPR3 534 aa13.62□□□□□ -0.23
CLN3-208ENST00000561505 ZNF620Q6ZNG0 422 aa13.62□□□□□ -0.23
CLN3-208ENST00000561505 ARPINQ7Z6K5 226 aa13.62□□□□□ -0.23
CLN3-208ENST00000561505 ZBTB46Q86UZ6 589 aa13.62□□□□□ -0.23
CLN3-208ENST00000561505 SSMEM1Q8WWF3 244 aa13.62□□□□□ -0.23
CLN3-208ENST00000561505 DYRK2Q92630 601 aa13.62□□□□□ -0.23
CLN3-208ENST00000561505 ZDHHC16Q969W1 377 aa13.62□□□□□ -0.23
CLN3-208ENST00000561505 FAM46AQ96IP4 442 aaKnown RBP13.62□□□□□ -0.23
CLN3-208ENST00000561505 DHRS1Q96LJ7 313 aa13.62□□□□□ -0.23
CLN3-208ENST00000561505 HCAR1Q9BXC0 346 aa13.62□□□□□ -0.23
CLN3-208ENST00000561505 SIRPDQ9H106 197 aa13.62□□□□□ -0.23
CLN3-208ENST00000561505 MARCH7Q9H992 704 aa13.62□□□□□ -0.23
CLN3-208ENST00000561505 PNRC2Q9NPJ4 139 aaKnown RBP13.62□□□□□ -0.23
CLN3-208ENST00000561505 B9D1Q9UPM9 204 aa13.62□□□□□ -0.23
CLN3-208ENST00000561505 IER3IP1Q9Y5U9 82 aa13.62□□□□□ -0.23
CLN3-208ENST00000561505 M0QZ24 198 aa13.61□□□□□ -0.23
CLN3-208ENST00000561505 CXCR6O00574 342 aa13.61□□□□□ -0.23
CLN3-208ENST00000561505 TIMM23O14925 209 aa13.61□□□□□ -0.23
CLN3-208ENST00000561505 ARPC3O15145 178 aa13.61□□□□□ -0.23
CLN3-208ENST00000561505 NDUFA2O43678 99 aa13.61□□□□□ -0.23
CLN3-208ENST00000561505 FAM20BO75063 409 aa13.61□□□□□ -0.23
CLN3-208ENST00000561505 FCN3O75636 299 aa13.61□□□□□ -0.23
CLN3-208ENST00000561505 PROK1P58294 105 aa13.61□□□□□ -0.23
CLN3-208ENST00000561505 MPPED2Q15777 294 aa13.61□□□□□ -0.23
CLN3-208ENST00000561505 MEP1BQ16820 701 aa13.61□□□□□ -0.23
CLN3-208ENST00000561505 SLC18B1Q6NT16 456 aa13.61□□□□□ -0.23
CLN3-208ENST00000561505 CGB2Q6NT52 195 aa13.61□□□□□ -0.23
CLN3-208ENST00000561505 C17orf107Q6ZR85 190 aa13.61□□□□□ -0.23
CLN3-208ENST00000561505 RRM2BQ7LG56 351 aa13.61□□□□□ -0.23
CLN3-208ENST00000561505 LDLRAD3Q86YD5 345 aa13.61□□□□□ -0.23
CLN3-208ENST00000561505 OR6V1Q8N148 313 aa13.61□□□□□ -0.23
CLN3-208ENST00000561505 BHLHE23Q8NDY6 225 aa13.61□□□□□ -0.23
CLN3-208ENST00000561505 LINC01006Q8NI28 216 aa13.61□□□□□ -0.23
CLN3-208ENST00000561505 HSH2DQ96JZ2 352 aa13.61□□□□□ -0.23
CLN3-208ENST00000561505 C7orf34Q96L11 122 aa13.61□□□□□ -0.23
CLN3-208ENST00000561505 TSSK2Q96PF2 358 aa13.61□□□□□ -0.23
CLN3-208ENST00000561505 SLC22A4Q9H015 551 aa13.61□□□□□ -0.23
CLN3-208ENST00000561505 CYB5R1Q9UHQ9 305 aa13.61□□□□□ -0.23
CLN3-208ENST00000561505 IGHV3-64DA0A0J9YX35 117 aa13.6□□□□□ -0.23
CLN3-208ENST00000561505 LGALS8O00214 317 aa13.6□□□□□ -0.23
CLN3-208ENST00000561505 NME4O00746 187 aa13.6□□□□□ -0.23
CLN3-208ENST00000561505 SOCS2O14508 198 aa13.6□□□□□ -0.23
CLN3-208ENST00000561505 CRYBA1P05813 215 aa13.6□□□□□ -0.23
CLN3-208ENST00000561505 SFTPBP07988 381 aa13.6□□□□□ -0.23
CLN3-208ENST00000561505 OTX1P32242 354 aaPredicted RBP13.6□□□□□ -0.23
CLN3-208ENST00000561505 GGT2P36268 569 aa13.6□□□□□ -0.23
CLN3-208ENST00000561505 MDH1P40925 334 aaKnown RBP13.6□□□□□ -0.23
CLN3-208ENST00000561505 RPS6KA3P51812 740 aa13.6□□□□□ -0.23
CLN3-208ENST00000561505 LIPEQ05469 1076 aa13.6□□□□□ -0.23
CLN3-208ENST00000561505 PDCD1Q15116 288 aa13.6□□□□□ -0.23
CLN3-208ENST00000561505 DNM1P34Q6PK57 102 aa13.6□□□□□ -0.23
CLN3-208ENST00000561505 CFAP77Q6ZQR2 320 aa13.6□□□□□ -0.23
CLN3-208ENST00000561505 NAA40Q86UY6 237 aa13.6□□□□□ -0.23
CLN3-208ENST00000561505 OR11L1Q8NGX0 322 aa13.6□□□□□ -0.23
CLN3-208ENST00000561505 RSRC1Q96IZ7 334 aaKnown RBP13.6□□□□□ -0.23
CLN3-208ENST00000561505 DMRTB1Q96MA1 342 aa13.6□□□□□ -0.23
CLN3-208ENST00000561505 WDFY2Q96P53 400 aa13.6□□□□□ -0.23
CLN3-208ENST00000561505 WDR76Q9H967 626 aa13.6□□□□□ -0.23
CLN3-208ENST00000561505 VIPAS39Q9H9C1 493 aa13.6□□□□□ -0.23
CLN3-208ENST00000561505 ACOXLQ9NUZ1 547 aa13.6□□□□□ -0.23
CLN3-208ENST00000561505 NDUFAF4Q9P032 175 aa13.6□□□□□ -0.23
CLN3-208ENST00000561505 ERVK-18Q9QC07 812 aa13.6□□□□□ -0.23
CLN3-208ENST00000561505 RNF7Q9UBF6 113 aa13.6□□□□□ -0.23
CLN3-208ENST00000561505 KAAG1Q9UBP8 84 aa13.6□□□□□ -0.23
CLN3-208ENST00000561505 TMCC3Q9ULS5 477 aa13.6□□□□□ -0.23
CLN3-208ENST00000561505 GMDSO60547 372 aa13.59□□□□□ -0.23
CLN3-208ENST00000561505 ZNF682O95780 498 aa13.59□□□□□ -0.23
CLN3-208ENST00000561505 LHBP01229 141 aa13.59□□□□□ -0.23
CLN3-208ENST00000561505 H1F0P07305 194 aaKnown RBP13.59□□□□□ -0.23
CLN3-208ENST00000561505 IRF2P14316 349 aa13.59□□□□□ -0.23
CLN3-208ENST00000561505 RHCEP18577 417 aa13.59□□□□□ -0.23
CLN3-208ENST00000561505 IER3P46695 156 aa13.59□□□□□ -0.23
CLN3-208ENST00000561505 SEC23BQ15437 767 aa13.59□□□□□ -0.23
CLN3-208ENST00000561505 KCNJ8Q15842 424 aa13.59□□□□□ -0.23
CLN3-208ENST00000561505 RUSC1-AS1Q66K80 236 aa13.59□□□□□ -0.23
CLN3-208ENST00000561505 CORO6Q6QEF8 472 aa13.59□□□□□ -0.23
CLN3-208ENST00000561505 RP9Q8TA86 221 aaKnown RBP13.59□□□□□ -0.23
CLN3-208ENST00000561505 TBC1D15Q8TC07 691 aa13.59□□□□□ -0.23
CLN3-208ENST00000561505 HOPXQ9BPY8 73 aaPredicted RBP13.59□□□□□ -0.23
CLN3-208ENST00000561505 RBM4BQ9BQ04 359 aaKnown RBP13.59□□□□□ -0.23
CLN3-208ENST00000561505 RERGLQ9H628 205 aa13.59□□□□□ -0.23
CLN3-208ENST00000561505 C16orf95Q9H693 158 aa13.59□□□□□ -0.23
CLN3-208ENST00000561505 SMURF1Q9HCE7 757 aa13.59□□□□□ -0.23
CLN3-208ENST00000561505 TRIM36Q9NQ86 728 aa13.59□□□□□ -0.23
CLN3-208ENST00000561505 RPS6KA6Q9UK32 745 aa13.59□□□□□ -0.23
CLN3-208ENST00000561505 NOP16Q9Y3C1 178 aaKnown RBP13.59□□□□□ -0.23
CLN3-208ENST00000561505 IGHV1-69DA0A0B4J2H0 117 aa13.58□□□□□ -0.24
CLN3-208ENST00000561505 TOX4O94842 621 aa13.58□□□□□ -0.24
CLN3-208ENST00000561505 SERPINA1P01009 418 aa13.58□□□□□ -0.24
CLN3-208ENST00000561505 IGHV1-69P01742 117 aa13.58□□□□□ -0.24
CLN3-208ENST00000561505 GSK3BP49841 420 aa13.58□□□□□ -0.24
CLN3-208ENST00000561505 TRAP1Q12931 704 aaKnown RBP13.58□□□□□ -0.24
CLN3-208ENST00000561505 RFX4Q33E94 735 aa13.58□□□□□ -0.24
CLN3-208ENST00000561505 SLC36A3Q495N2 470 aa13.58□□□□□ -0.24
CLN3-208ENST00000561505 PRAMEF6Q5VXH4 476 aa13.58□□□□□ -0.24
CLN3-208ENST00000561505 BRICD5Q6PL45 260 aa13.58□□□□□ -0.24
CLN3-208ENST00000561505 SMARCD3Q6STE5 483 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms