RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 ZNF441Q8N8Z8 693 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 OR2Z1Q8NG97 314 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 OR56B2PQ8NGI1 322 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 OTOSQ8NHW6 89 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 APH1BQ8WW43 257 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 H1FXQ92522 213 aaKnown RBP4.8□□□□□ -1.64
VPS13C-209ENST00000560637 CCL17Q92583 94 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 RDH5Q92781 318 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 REEP6Q96HR9 211 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 ST6GALNAC5Q9BVH7 336 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 PBOV1Q9GZY1 135 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 LPAR2Q9HBW0 351 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 DECR2Q9NUI1 292 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 KLHDC2Q9Y2U9 406 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 BOD1L1Q8NFC6 3051 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 PLXNB3Q9ULL4 1909 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 MYO9AB2RTY4 2548 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP4.8□□□□□ -1.64
VPS13C-209ENST00000560637 TMEM229AB2RXF0 380 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 H3BMQ9 156 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 SLC33A1O00400 549 aaPredicted RBP4.8□□□□□ -1.64
VPS13C-209ENST00000560637 DLGAP1O14490 977 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 HS3ST1O14792 307 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 TRAF3IP2O43734 574 aaPredicted RBP4.8□□□□□ -1.64
VPS13C-209ENST00000560637 NXPH2O95156 264 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 ZFPL1O95159 310 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 IGHV3-13P01766 116 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 IGHV3-7P01780 117 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 PTHLHP12272 177 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 MAP2K3P46734 347 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 VEGFCP49767 419 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 FXYD6P3P58550 94 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 GALEQ14376 348 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 SLC17A1Q14916 467 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 TBCEQ15813 527 aaPredicted RBP4.8□□□□□ -1.64
VPS13C-209ENST00000560637 RAB11BQ15907 218 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 ZMAT1Q5H9K5 638 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 C12orf73Q69YU5 71 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 RPL22L1Q6P5R6 122 aaKnown RBP4.8□□□□□ -1.64
VPS13C-209ENST00000560637 PAMR1Q6UXH9 720 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 TMEM17Q86X19 198 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 SKA3Q8IX90 412 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 PHC2Q8IXK0 858 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 ZCCHC24Q8N2G6 241 aaKnown RBP4.8□□□□□ -1.64
VPS13C-209ENST00000560637 ZFP62Q8NB50 900 aaPredicted RBP4.8□□□□□ -1.64
VPS13C-209ENST00000560637 SLC26A10Q8NG04 563 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 OR51A4Q8NGJ6 313 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 OR2G2Q8NGZ5 317 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 OR1F12Q8NHA8 337 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 FNDC8Q8TC99 324 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 ASB17Q8WXJ9 295 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 MAFIPQ8WZ33 124 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 PELI1Q96FA3 418 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 COG8Q96MW5 612 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 SELENOIQ9C0D9 397 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 GABARAPL1Q9H0R8 117 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 KCNK15Q9H427 330 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 NIPAL2Q9H841 368 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 SIAEQ9HAT2 523 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 SLC25A19Q9HC21 320 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 DMXL1Q9Y485 3027 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 C16orf97H3BN30 126 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 LINC01387J3KSC0 135 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 HPGDSO60760 199 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 TSC22D2O75157 780 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 LIMS3P0CW19 117 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 LIMS4P0CW20 117 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 GLI4P10075 376 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 ARSBP15848 533 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 HAAOP46952 286 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 MAP2K6P52564 334 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 FXYD4P59646 89 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 IKZF1Q13422 519 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 WDR38Q5JTN6 314 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 ZNF684Q5T5D7 378 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 FNDC7Q5VTL7 733 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 AADACL4Q5VUY2 407 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 CFAP77Q6ZQR2 320 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 BHLHA15Q7RTS1 189 aaPredicted RBP4.79□□□□□ -1.64
VPS13C-209ENST00000560637 FOXRED2Q8IWF2 684 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 OR6X1Q8NH79 312 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 TOMM40LQ969M1 308 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 OR2M2Q96R28 347 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 PTDSS2Q9BVG9 487 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 ADGRL4Q9HBW9 690 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 ERRFI1Q9UJM3 462 aaPredicted RBP4.79□□□□□ -1.64
VPS13C-209ENST00000560637 PRSS44E7EML9 344 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 AKR7A2O43488 359 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 PMS2P2O95744 297 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 LALBAP00709 142 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 CD3GP09693 182 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 ZNF93P35789 620 aaPredicted RBP4.79□□□□□ -1.64
VPS13C-209ENST00000560637 RAD52P43351 418 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 GPM6AP51674 278 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 GP2P55259 537 aaKnown RBP4.79□□□□□ -1.64
VPS13C-209ENST00000560637 ARPC4P59998 168 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 GABARAPL2P60520 117 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 CCL8P80075 99 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 FABP5Q01469 135 aa4.79□□□□□ -1.64
VPS13C-209ENST00000560637 RBM39Q14498 530 aaKnown RBP4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms