RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 ZNF391Q9UJN7 358 aa7.98□□□□□ -1.13
LDLR-210ENST00000559340 GNG8Q9UK08 70 aa7.98□□□□□ -1.13
LDLR-210ENST00000559340 KLHDC2Q9Y2U9 406 aa7.98□□□□□ -1.13
LDLR-210ENST00000559340 LRP12Q9Y561 859 aa7.98□□□□□ -1.13
LDLR-210ENST00000559340 SNX5Q9Y5X3 404 aa7.98□□□□□ -1.13
LDLR-210ENST00000559340 ARID1AO14497 2285 aa7.98□□□□□ -1.13
LDLR-210ENST00000559340 NBPF19A0A087WUL8 3843 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 CHD3Q12873 2000 aaKnown RBP7.97□□□□□ -1.13
LDLR-210ENST00000559340 TMEM129A0AVI4 362 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 SHISA9B4DS77 424 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 LOC110117498-PIK3R3F6TDL0 507 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 J3QLW9 94 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 HAX1O00165 279 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 HS3ST1O14792 307 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 SMPD2O60906 423 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 HTR1AP08908 422 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 DBHP09172 617 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 FAM157BP0CG42 384 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 SELEP16581 610 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 ZNF19P17023 458 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 COL8A1P27658 744 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 LOXP28300 417 aaPredicted RBP7.97□□□□□ -1.13
LDLR-210ENST00000559340 LIPAP38571 399 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 EVX1P49640 407 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 MMP16P51512 607 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 TAS2R43P59537 309 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 PSMA6P60900 246 aaKnown RBP7.97□□□□□ -1.13
LDLR-210ENST00000559340 SLC35A2P78381 396 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 HGFACQ04756 655 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 TIGD6Q17RP2 521 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 ZNF672Q499Z4 452 aaPredicted RBP7.97□□□□□ -1.13
LDLR-210ENST00000559340 AGAP6Q5VW22 663 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 LIPNQ5VXI9 398 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 LAIR2Q6ISS4 152 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 C20orf204Q6ZNR8 217 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 COLCA1Q6ZS62 124 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 PRSS48Q7RTY5 328 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 CCDC54Q8NEL0 328 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 OR52N1Q8NH53 320 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 SYNPRQ8TBG9 265 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 SLC7A6Q92536 515 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 FBXW5Q969U6 566 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 C4orf36Q96KX1 117 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 AMELYQ99218 206 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 MND1Q9BWT6 205 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 CDCA4Q9BXL8 241 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 CCDC90BQ9GZT6 254 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 CLEC4MQ9H2X3 399 aaPredicted RBP7.97□□□□□ -1.13
LDLR-210ENST00000559340 CA10Q9NS85 328 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 UBAP1Q9NZ09 502 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 MRM2Q9UI43 246 aaKnown RBP7.97□□□□□ -1.13
LDLR-210ENST00000559340 N6AMT1Q9Y5N5 214 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 R4GMQ9 66 aa7.97□□□□□ -1.13
LDLR-210ENST00000559340 RAI1Q7Z5J4 1906 aaPredicted RBP7.96□□□□□ -1.13
LDLR-210ENST00000559340 B9A039 149 aa7.96□□□□□ -1.14
LDLR-210ENST00000559340 PSMD9O00233 223 aa7.96□□□□□ -1.14
LDLR-210ENST00000559340 SIAH2O43255 324 aa7.96□□□□□ -1.14
LDLR-210ENST00000559340 TBX1O43435 398 aa7.96□□□□□ -1.14
LDLR-210ENST00000559340 MTRF1O75570 445 aaKnown RBP7.96□□□□□ -1.14
LDLR-210ENST00000559340 RPP14O95059 124 aaKnown RBP7.96□□□□□ -1.14
LDLR-210ENST00000559340 TNFAIP8O95379 198 aa7.96□□□□□ -1.14
LDLR-210ENST00000559340 LIMS3P0CW19 117 aa7.96□□□□□ -1.14
LDLR-210ENST00000559340 LIMS4P0CW20 117 aa7.96□□□□□ -1.14
LDLR-210ENST00000559340 PSKH1P11801 424 aa7.96□□□□□ -1.14
LDLR-210ENST00000559340 RAC2P15153 192 aa7.96□□□□□ -1.14
LDLR-210ENST00000559340 ATP6V1B1P15313 513 aa7.96□□□□□ -1.14
LDLR-210ENST00000559340 ZNF12P17014 697 aa7.96□□□□□ -1.14
LDLR-210ENST00000559340 THBS4P35443 961 aa7.96□□□□□ -1.14
LDLR-210ENST00000559340 SERPINF1P36955 418 aa7.96□□□□□ -1.14
LDLR-210ENST00000559340 DDOSTP39656 456 aa7.96□□□□□ -1.14
LDLR-210ENST00000559340 TGM4P49221 684 aa7.96□□□□□ -1.14
LDLR-210ENST00000559340 ETV1P50549 477 aa7.96□□□□□ -1.14
LDLR-210ENST00000559340 CHN2P52757 468 aa7.96□□□□□ -1.14
LDLR-210ENST00000559340 OR12D2P58182 307 aa7.96□□□□□ -1.14
LDLR-210ENST00000559340 ZNF121P58317 390 aaPredicted RBP7.96□□□□□ -1.14
LDLR-210ENST00000559340 NKX6-1P78426 367 aaPredicted RBP7.96□□□□□ -1.14
LDLR-210ENST00000559340 RSPO1Q2MKA7 263 aaPredicted RBP7.96□□□□□ -1.14
LDLR-210ENST00000559340 KCTD21Q4G0X4 260 aa7.96□□□□□ -1.14
LDLR-210ENST00000559340 CCDC58Q4VC31 144 aa7.96□□□□□ -1.14
LDLR-210ENST00000559340 TP53I3Q53FA7 332 aa7.96□□□□□ -1.14
LDLR-210ENST00000559340 ZNF684Q5T5D7 378 aa7.96□□□□□ -1.14
LDLR-210ENST00000559340 BCL2L15Q5TBC7 163 aa7.96□□□□□ -1.14
LDLR-210ENST00000559340 FDX2Q6P4F2 183 aa7.96□□□□□ -1.14
LDLR-210ENST00000559340 VHLLQ6RSH7 139 aa7.96□□□□□ -1.14
LDLR-210ENST00000559340 FAM57BQ71RH2 274 aa7.96□□□□□ -1.14
LDLR-210ENST00000559340 SSX6Q7RTT6 188 aa7.96□□□□□ -1.14
LDLR-210ENST00000559340 MRPL21Q7Z2W9 205 aaKnown RBP7.96□□□□□ -1.14
LDLR-210ENST00000559340 MYPOPQ86VE0 399 aaPredicted RBP7.96□□□□□ -1.14
LDLR-210ENST00000559340 PAQR4Q8N4S7 273 aaPredicted RBP7.96□□□□□ -1.14
LDLR-210ENST00000559340 ZNF611Q8N823 705 aa7.96□□□□□ -1.14
LDLR-210ENST00000559340 KBTBD8Q8NFY9 601 aa7.96□□□□□ -1.14
LDLR-210ENST00000559340 NR1H4Q96RI1 486 aaPredicted RBP7.96□□□□□ -1.14
LDLR-210ENST00000559340 SIGLEC11Q96RL6 698 aa7.96□□□□□ -1.14
LDLR-210ENST00000559340 OR51B6Q9H340 312 aa7.96□□□□□ -1.14
LDLR-210ENST00000559340 BRD7Q9NPI1 651 aa7.96□□□□□ -1.14
LDLR-210ENST00000559340 TRIM36Q9NQ86 728 aa7.96□□□□□ -1.14
LDLR-210ENST00000559340 CGGBP1Q9UFW8 167 aaPredicted RBP7.96□□□□□ -1.14
LDLR-210ENST00000559340 OR52A1Q9UKL2 312 aa7.96□□□□□ -1.14
LDLR-210ENST00000559340 GTF2A1LQ9UNN4 478 aa7.96□□□□□ -1.14
LDLR-210ENST00000559340 NOP16Q9Y3C1 178 aaKnown RBP7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms