RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 MYL12BO14950 172 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 UBDO15205 165 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 ADAM12O43184 909 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 AKR7A2O43488 359 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 AIREO43918 545 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 RAD1O60671 282 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 HCN1O60741 890 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 HUS1O60921 280 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 NIPSNAP2O75323 286 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 CCNB2O95067 398 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 LSM8O95777 96 aaKnown RBP2.23□□□□□ -2.05
VPS13C-208ENST00000559119 CLIC3O95833 236 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 LGI1O95970 557 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 LALBAP00709 142 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 IFNB1P01574 187 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 IFNGP01579 166 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 C2P06681 752 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 FABP1P07148 127 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 IGFBP1P08833 259 aaPredicted RBP2.23□□□□□ -2.05
VPS13C-208ENST00000559119 HIST1H2AGP0C0S8 130 aaPredicted RBP2.23□□□□□ -2.05
VPS13C-208ENST00000559119 CD36P16671 472 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 MYL12AP19105 171 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 KDELR1P24390 212 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 GTF2E2P29084 291 aaKnown RBP2.23□□□□□ -2.05
VPS13C-208ENST00000559119 CALCRP30988 508 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 NUP62P37198 522 aaPredicted RBP2.23□□□□□ -2.05
VPS13C-208ENST00000559119 AP1S1P61966 158 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 RRAS2P62070 204 aaPredicted RBP2.23□□□□□ -2.05
VPS13C-208ENST00000559119 TSPAN5P62079 268 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 YWHAEP62258 255 aaKnown RBP2.23□□□□□ -2.05
VPS13C-208ENST00000559119 CCNA1P78396 465 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 HTD2P86397 168 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 HSF2Q03933 536 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 STX4Q12846 297 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 SLAMF1Q13291 335 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 BTN1A1Q13410 526 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 TFDP2Q14188 446 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 QPRTQ15274 297 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 HADHQ16836 314 aaKnown RBP2.23□□□□□ -2.05
VPS13C-208ENST00000559119 HSDL1Q3SXM5 330 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 DNLZQ5SXM8 178 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 C1orf220Q5T0J3 134 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 ZNF470Q6ECI4 717 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 HIST2H2AA3Q6FI13 130 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 METAP1DQ6UB28 335 aaPredicted RBP2.23□□□□□ -2.05
VPS13C-208ENST00000559119 ANGPTL8Q6UXH0 198 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 C1orf186Q6ZWK4 172 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 PGAP1Q75T13 922 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 HIST2H2ABQ8IUE6 130 aaPredicted RBP2.23□□□□□ -2.05
VPS13C-208ENST00000559119 OFCC1Q8IZS5 231 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 TBC1D19Q8N5T2 526 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 RNF148Q8N7C7 305 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 ZNF557Q8N988 423 aaPredicted RBP2.23□□□□□ -2.05
VPS13C-208ENST00000559119 OR1M1Q8NGA1 313 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 ACTL9Q8TC94 416 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 SPPL2BQ8TCT7 592 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 HIST1H2ACQ93077 130 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 HGDQ93099 445 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 TMEM186Q96B77 213 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 C19orf60Q96EN9 201 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 C14orf79Q96F83 325 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 TRNT1Q96Q11 434 aaKnown RBP2.23□□□□□ -2.05
VPS13C-208ENST00000559119 TCEAL7Q9BRU2 100 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 MARVELD1Q9BSK0 173 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 TBCDQ9BTW9 1192 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 MND1Q9BWT6 205 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 GSDMCQ9BYG8 508 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 ZNF436Q9C0F3 470 aaPredicted RBP2.23□□□□□ -2.05
VPS13C-208ENST00000559119 POLR1EQ9GZS1 481 aaKnown RBP2.23□□□□□ -2.05
VPS13C-208ENST00000559119 SRRQ9GZT4 340 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 GABARAPL1Q9H0R8 117 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 DNTTIP1Q9H147 329 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 ALX4Q9H161 411 aaPredicted RBP2.23□□□□□ -2.05
VPS13C-208ENST00000559119 PIGUQ9H490 435 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 SAV1Q9H4B6 383 aaPredicted RBP2.23□□□□□ -2.05
VPS13C-208ENST00000559119 NCOR1P1Q9H4R4 102 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 C11orf49Q9H6J7 331 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 WDR55Q9H6Y2 383 aaPredicted RBP2.23□□□□□ -2.05
VPS13C-208ENST00000559119 TDRD3Q9H7E2 651 aaKnown RBP2.23□□□□□ -2.05
VPS13C-208ENST00000559119 MEAF6Q9HAF1 191 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 FOLH1BQ9HBA9 442 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 ACOT13Q9NPJ3 140 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 DYRK4Q9NR20 520 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 UFSP2Q9NUQ7 469 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 FAM49BQ9NUQ9 324 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 BABAM2Q9NXR7 383 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 TAS2R3Q9NYW6 316 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 RBAKQ9NYW8 714 aaPredicted RBP2.23□□□□□ -2.05
VPS13C-208ENST00000559119 OR1A1Q9P1Q5 309 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 C3orf18Q9UK00 162 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 BAIAP2Q9UQB8 552 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 KLHDC2Q9Y2U9 406 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 MRPS2Q9Y399 296 aaKnown RBP2.23□□□□□ -2.05
VPS13C-208ENST00000559119 HSPB11Q9Y547 144 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 MAB21L2Q9Y586 359 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 AP1M2Q9Y6Q5 423 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 AFDNP55196 1824 aaKnown RBP2.23□□□□□ -2.05
VPS13C-208ENST00000559119 TNS3Q68CZ2 1445 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 MYH3P11055 1940 aa2.23□□□□□ -2.05
VPS13C-208ENST00000559119 COL24A1Q17RW2 1714 aa2.22□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms