RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 NOXA1Q86UR1 476 aa7.48□□□□□ -1.21
USP3-208ENST00000558285 SVOPLQ8N434 492 aa7.48□□□□□ -1.21
USP3-208ENST00000558285 CLDN22Q8N7P3 220 aa7.48□□□□□ -1.21
USP3-208ENST00000558285 LRRC75AQ8NAA5 344 aa7.48□□□□□ -1.21
USP3-208ENST00000558285 GJC3Q8NFK1 279 aa7.48□□□□□ -1.21
USP3-208ENST00000558285 OR5H6Q8NGV6 325 aa7.48□□□□□ -1.21
USP3-208ENST00000558285 OR2T4Q8NH00 348 aa7.48□□□□□ -1.21
USP3-208ENST00000558285 TEX47Q8TBZ9 253 aa7.48□□□□□ -1.21
USP3-208ENST00000558285 ZFAND1Q8TCF1 268 aa7.48□□□□□ -1.21
USP3-208ENST00000558285 CANT1Q8WVQ1 401 aa7.48□□□□□ -1.21
USP3-208ENST00000558285 TMEM80Q96HE8 168 aa7.48□□□□□ -1.21
USP3-208ENST00000558285 Q96M85 177 aa7.48□□□□□ -1.21
USP3-208ENST00000558285 OR2H1Q9GZK4 316 aa7.48□□□□□ -1.21
USP3-208ENST00000558285 EGLN1Q9GZT9 426 aa7.48□□□□□ -1.21
USP3-208ENST00000558285 OR52D1Q9H346 318 aa7.48□□□□□ -1.21
USP3-208ENST00000558285 POLE4Q9NR33 117 aa7.48□□□□□ -1.21
USP3-208ENST00000558285 VSX1Q9NZR4 365 aaPredicted RBP7.48□□□□□ -1.21
USP3-208ENST00000558285 GMPR2Q9P2T1 348 aaKnown RBP7.48□□□□□ -1.21
USP3-208ENST00000558285 KLHL21Q9UJP4 597 aa7.48□□□□□ -1.21
USP3-208ENST00000558285 IER3IP1Q9Y5U9 82 aa7.48□□□□□ -1.21
USP3-208ENST00000558285 CDH10Q9Y6N8 788 aa7.48□□□□□ -1.21
USP3-208ENST00000558285 PRRC2AP48634 2157 aaKnown RBP7.48□□□□□ -1.21
USP3-208ENST00000558285 ARID1AO14497 2285 aa7.48□□□□□ -1.21
USP3-208ENST00000558285 LRBAP50851 2863 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 NBPF19A0A087WUL8 3843 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 C5orf49A4QMS7 147 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 ARRDC5A6NEK1 342 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 OR6C6A6NF89 314 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 RIIAD1A6NNX1 92 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 TRIM77I1YAP6 450 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 CDC42EP2O14613 210 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 SGCEO43556 437 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 DOK2O60496 412 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 DIRAS1O95057 198 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 CST1P01037 141 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 HLA-DQA2P01906 255 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 CELA3BP08861 270 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 ZNF3P17036 446 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 ZNF32P17041 273 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 USF1P22415 310 aaPredicted RBP7.47□□□□□ -1.21
USP3-208ENST00000558285 MSX2P35548 267 aaPredicted RBP7.47□□□□□ -1.21
USP3-208ENST00000558285 POLR2IP36954 125 aaKnown RBP7.47□□□□□ -1.21
USP3-208ENST00000558285 MAGEA2P43356 314 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 GZMKP49863 264 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 ALDH3A2P51648 485 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 MRPS11P82912 194 aaKnown RBP7.47□□□□□ -1.21
USP3-208ENST00000558285 HGFACQ04756 655 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 RUNX1T1Q06455 604 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 SLC3A1Q07837 685 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 STEAP3Q658P3 488 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 FOXL2NBQ6ZUU3 175 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 SPATC1Q76KD6 591 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 FAM86B1Q8N7N1 296 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 OR2T33Q8NG76 320 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 OR1J1Q8NGS3 322 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 HTRA1Q92743 480 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 YIPF6Q96EC8 236 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 ST6GAL2Q96JF0 529 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 RNF170Q96K19 258 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 ZNF416Q9BWM5 594 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 SLIRPQ9GZT3 109 aaKnown RBP7.47□□□□□ -1.21
USP3-208ENST00000558285 NXF2Q9GZY0 626 aaKnown RBP7.47□□□□□ -1.21
USP3-208ENST00000558285 RACGAP1Q9H0H5 632 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 HDHD2Q9H0R4 259 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 SYT4Q9H2B2 425 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 NIPAL2Q9H841 368 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 DECR2Q9NUI1 292 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 PLEK2Q9NYT0 353 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 CCDC59Q9P031 241 aaKnown RBP7.47□□□□□ -1.21
USP3-208ENST00000558285 OAZ3Q9UMX2 235 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 NOP16Q9Y3C1 178 aaKnown RBP7.47□□□□□ -1.21
USP3-208ENST00000558285 ADAM18Q9Y3Q7 739 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 LYVE1Q9Y5Y7 322 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 AUP1Q9Y679 476 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 FBN2P35556 2912 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 RAI1Q7Z5J4 1906 aaPredicted RBP7.47□□□□□ -1.21
USP3-208ENST00000558285 PDZD2O15018 2839 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 ROS1P08922 2347 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 RNF223E7ERA6 249 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 EI24O14681 340 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 SURF4O15260 269 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 PPP1R3DO95685 299 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 ABHD16AO95870 558 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 ADRA2AP08913 450 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 DAOP14920 347 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 HNF1AP20823 631 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 HTR2BP41595 481 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 HTR5AP47898 357 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 FMODQ06828 376 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 LOXL1Q08397 574 aaPredicted RBP7.47□□□□□ -1.21
USP3-208ENST00000558285 MICAQ29983 383 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 ZNF404Q494X3 552 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 MESTQ5EB52 335 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 C6orf141Q5SZD1 244 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 LEG1Q6P5S2 330 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 ZNF620Q6ZNG0 422 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 RASSF6Q6ZTQ3 369 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 FAM122BQ7Z309 247 aa7.47□□□□□ -1.21
USP3-208ENST00000558285 PEG10Q86TG7 708 aaKnown RBP7.47□□□□□ -1.21
USP3-208ENST00000558285 KRTAP1-3Q8IUG1 177 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms