RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 A0A0B4J2A0 478 aa13.31□□□□□ -0.28
CUX1-215ENST00000556210 SNRPGP15A8MWD9 76 aa13.31□□□□□ -0.28
CUX1-215ENST00000556210 PATE3B3GLJ2 98 aa13.31□□□□□ -0.28
CUX1-215ENST00000556210 MBTPS2O43462 519 aa13.31□□□□□ -0.28
CUX1-215ENST00000556210 MT-ATP6P00846 226 aa13.31□□□□□ -0.28
CUX1-215ENST00000556210 SERPINA5P05154 406 aa13.31□□□□□ -0.28
CUX1-215ENST00000556210 CELA2AP08217 269 aa13.31□□□□□ -0.28
CUX1-215ENST00000556210 PNLIPRP2P54317 469 aa13.31□□□□□ -0.28
CUX1-215ENST00000556210 PLGLB1Q02325 96 aa13.31□□□□□ -0.28
CUX1-215ENST00000556210 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.31□□□□□ -0.28
CUX1-215ENST00000556210 TRIM61Q5EBN2 209 aa13.31□□□□□ -0.28
CUX1-215ENST00000556210 VASH2Q86V25 355 aa13.31□□□□□ -0.28
CUX1-215ENST00000556210 CDH26Q8IXH8 852 aa13.31□□□□□ -0.28
CUX1-215ENST00000556210 HOXB13Q92826 284 aaPredicted RBP13.31□□□□□ -0.28
CUX1-215ENST00000556210 MARVELD3Q96A59 401 aa13.31□□□□□ -0.28
CUX1-215ENST00000556210 TMEM59Q9BXS4 323 aa13.31□□□□□ -0.28
CUX1-215ENST00000556210 SHPKQ9UHJ6 478 aa13.31□□□□□ -0.28
CUX1-215ENST00000556210 ICAM5Q9UMF0 924 aa13.31□□□□□ -0.28
CUX1-215ENST00000556210 PCDHGA5Q9Y5G8 931 aa13.31□□□□□ -0.28
CUX1-215ENST00000556210 PCDHGA1Q9Y5H4 931 aa13.31□□□□□ -0.28
CUX1-215ENST00000556210 CHD9Q3L8U1 2897 aa13.31□□□□□ -0.28
CUX1-215ENST00000556210 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.3□□□□□ -0.28
CUX1-215ENST00000556210 STMND1H3BQB6 276 aa13.3□□□□□ -0.28
CUX1-215ENST00000556210 TNFSF12O43508 249 aa13.3□□□□□ -0.28
CUX1-215ENST00000556210 NDUFB6O95139 128 aa13.3□□□□□ -0.28
CUX1-215ENST00000556210 THBS2P35442 1172 aa13.3□□□□□ -0.28
CUX1-215ENST00000556210 INSM1Q01101 510 aaPredicted RBP13.3□□□□□ -0.28
CUX1-215ENST00000556210 BRICD5Q6PL45 260 aa13.3□□□□□ -0.28
CUX1-215ENST00000556210 OR52N4Q8NGI2 321 aa13.3□□□□□ -0.28
CUX1-215ENST00000556210 PHYHIPQ92561 330 aa13.3□□□□□ -0.28
CUX1-215ENST00000556210 RAB3CQ96E17 227 aa13.3□□□□□ -0.28
CUX1-215ENST00000556210 DUSP15Q9H1R2 295 aaPredicted RBP13.3□□□□□ -0.28
CUX1-215ENST00000556210 CHST11Q9NPF2 352 aa13.3□□□□□ -0.28
CUX1-215ENST00000556210 EHFQ9NZC4 300 aa13.3□□□□□ -0.28
CUX1-215ENST00000556210 A0A0A6YYH2 397 aa13.3□□□□□ -0.28
CUX1-215ENST00000556210 A6NJ64 397 aa13.3□□□□□ -0.28
CUX1-215ENST00000556210 FBXO24O75426 580 aa13.3□□□□□ -0.28
CUX1-215ENST00000556210 CTAG2O75638 210 aa13.3□□□□□ -0.28
CUX1-215ENST00000556210 P04436 131 aa13.3□□□□□ -0.28
CUX1-215ENST00000556210 ERCC1P07992 297 aaPredicted RBP13.3□□□□□ -0.28
CUX1-215ENST00000556210 NMBP08949 121 aa13.3□□□□□ -0.28
CUX1-215ENST00000556210 HRH1P35367 487 aa13.3□□□□□ -0.28
CUX1-215ENST00000556210 CAPZA1P52907 286 aa13.3□□□□□ -0.28
CUX1-215ENST00000556210 OR1J2Q8NGS2 313 aa13.3□□□□□ -0.28
CUX1-215ENST00000556210 SLC25A38Q96DW6 304 aa13.3□□□□□ -0.28
CUX1-215ENST00000556210 NPAS1Q99742 590 aa13.3□□□□□ -0.28
CUX1-215ENST00000556210 NKX6-2Q9C056 277 aaPredicted RBP13.3□□□□□ -0.28
CUX1-215ENST00000556210 ZNF768Q9H5H4 540 aaKnown RBP13.3□□□□□ -0.28
CUX1-215ENST00000556210 ALG1L2C9J202 215 aa13.3□□□□□ -0.28
CUX1-215ENST00000556210 STK17BO94768 372 aa13.3□□□□□ -0.28
CUX1-215ENST00000556210 GLSO94925 669 aaPredicted RBP13.3□□□□□ -0.28
CUX1-215ENST00000556210 DBHP09172 617 aa13.3□□□□□ -0.28
CUX1-215ENST00000556210 RPS4Y1P22090 263 aaKnown RBP13.3□□□□□ -0.28
CUX1-215ENST00000556210 CLDN6P56747 220 aa13.3□□□□□ -0.28
CUX1-215ENST00000556210 ADGRE4PQ86SQ3 457 aa13.3□□□□□ -0.28
CUX1-215ENST00000556210 ZSCAN1Q8NBB4 408 aa13.3□□□□□ -0.28
CUX1-215ENST00000556210 BHLHE23Q8NDY6 225 aa13.3□□□□□ -0.28
CUX1-215ENST00000556210 THRSPQ92748 146 aa13.3□□□□□ -0.28
CUX1-215ENST00000556210 PHB2Q99623 299 aa13.3□□□□□ -0.28
CUX1-215ENST00000556210 LSM5Q9Y4Y9 91 aaKnown RBP13.3□□□□□ -0.28
CUX1-215ENST00000556210 RPS10-NUDT3A0A1W2PQS6 291 aa13.29□□□□□ -0.28
CUX1-215ENST00000556210 BLACEA4D250 179 aa13.29□□□□□ -0.28
CUX1-215ENST00000556210 XRCC3O43542 346 aa13.29□□□□□ -0.28
CUX1-215ENST00000556210 RBMXP38159 391 aaKnown RBP13.29□□□□□ -0.28
CUX1-215ENST00000556210 NXPH1P58417 271 aa13.29□□□□□ -0.28
CUX1-215ENST00000556210 ZP1P60852 638 aa13.29□□□□□ -0.28
CUX1-215ENST00000556210 ZNF442Q9H7R0 627 aa13.29□□□□□ -0.28
CUX1-215ENST00000556210 A0A0D9SG52 128 aa13.29□□□□□ -0.28
CUX1-215ENST00000556210 IGF2P01344 180 aa13.29□□□□□ -0.28
CUX1-215ENST00000556210 RSU1Q15404 277 aa13.29□□□□□ -0.28
CUX1-215ENST00000556210 FAM76BQ5HYJ3 339 aa13.29□□□□□ -0.28
CUX1-215ENST00000556210 CCDC74BQ96LY2 380 aa13.29□□□□□ -0.28
CUX1-215ENST00000556210 ZNF230Q9UIE0 474 aaPredicted RBP13.29□□□□□ -0.28
CUX1-215ENST00000556210 BDP1A6H8Y1 2624 aa13.29□□□□□ -0.28
CUX1-215ENST00000556210 TMEM272A0A1B0GTI8 110 aa13.29□□□□□ -0.28
CUX1-215ENST00000556210 DDAH2O95865 285 aa13.29□□□□□ -0.28
CUX1-215ENST00000556210 GABRA1P14867 456 aa13.29□□□□□ -0.28
CUX1-215ENST00000556210 OPRM1P35372 400 aa13.29□□□□□ -0.28
CUX1-215ENST00000556210 ZNF84P51523 738 aa13.29□□□□□ -0.28
CUX1-215ENST00000556210 RPS18P62269 152 aaKnown RBP13.29□□□□□ -0.28
CUX1-215ENST00000556210 LINC01590Q5TEZ4 76 aa13.29□□□□□ -0.28
CUX1-215ENST00000556210 ZNF626Q68DY1 528 aa13.29□□□□□ -0.28
CUX1-215ENST00000556210 GPR137CQ8N3F9 429 aa13.29□□□□□ -0.28
CUX1-215ENST00000556210 SLC25A45Q8N413 288 aa13.29□□□□□ -0.28
CUX1-215ENST00000556210 PRR18Q8N4B5 295 aa13.29□□□□□ -0.28
CUX1-215ENST00000556210 ZNF721Q8TF20 911 aa13.29□□□□□ -0.28
CUX1-215ENST00000556210 C14orf166Q9Y224 244 aaKnown RBP13.29□□□□□ -0.28
CUX1-215ENST00000556210 PCDHGA9Q9Y5G4 932 aaKnown RBP13.29□□□□□ -0.28
CUX1-215ENST00000556210 ETV7Q9Y603 341 aa13.29□□□□□ -0.28
CUX1-215ENST00000556210 A0A0G2JK05 382 aa13.29□□□□□ -0.28
CUX1-215ENST00000556210 ANGPTL7O43827 346 aa13.29□□□□□ -0.28
CUX1-215ENST00000556210 EGR3Q06889 387 aa13.29□□□□□ -0.28
CUX1-215ENST00000556210 LINC00696Q6ZRV3 163 aa13.29□□□□□ -0.28
CUX1-215ENST00000556210 CPEB2Q7Z5Q1 589 aaKnown RBP13.29□□□□□ -0.28
CUX1-215ENST00000556210 SVBPQ8N300 66 aa13.29□□□□□ -0.28
CUX1-215ENST00000556210 SPICQ8N5J4 248 aa13.29□□□□□ -0.28
CUX1-215ENST00000556210 ZNF485Q8NCK3 441 aa13.29□□□□□ -0.28
CUX1-215ENST00000556210 CLRN3Q8NCR9 226 aa13.29□□□□□ -0.28
CUX1-215ENST00000556210 MARCH1Q8TCQ1 289 aa13.29□□□□□ -0.28
CUX1-215ENST00000556210 SLC39A7Q92504 469 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms