RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 TRAPPC2P0DI81 140 aa23.16■■□□□ 1.3
CCDC88C-205ENST00000553403 TRAPPC2BP0DI82 140 aa23.16■■□□□ 1.3
CCDC88C-205ENST00000553403 BDKRB2P30411 391 aa23.16■■□□□ 1.3
CCDC88C-205ENST00000553403 CAPZA1P52907 286 aa23.16■■□□□ 1.3
CCDC88C-205ENST00000553403 ARG2P78540 354 aa23.16■■□□□ 1.3
CCDC88C-205ENST00000553403 FOXC1Q12948 553 aa23.16■■□□□ 1.3
CCDC88C-205ENST00000553403 PLA1AQ53H76 456 aa23.16■■□□□ 1.3
CCDC88C-205ENST00000553403 ZNF529Q6P280 563 aa23.16■■□□□ 1.3
CCDC88C-205ENST00000553403 DOK3Q7L591 496 aa23.16■■□□□ 1.3
CCDC88C-205ENST00000553403 SIAH3Q8IW03 269 aa23.16■■□□□ 1.3
CCDC88C-205ENST00000553403 OR5D14Q8NGL3 314 aa23.16■■□□□ 1.3
CCDC88C-205ENST00000553403 ADAT3Q96EY9 351 aaPredicted RBP23.16■■□□□ 1.3
CCDC88C-205ENST00000553403 CNTNAP3BQ96NU0 1288 aa23.16■■□□□ 1.3
CCDC88C-205ENST00000553403 CNTNAP3Q9BZ76 1288 aa23.16■■□□□ 1.3
CCDC88C-205ENST00000553403 ACTL6AO96019 429 aa23.16■■□□□ 1.3
CCDC88C-205ENST00000553403 OTX1P32242 354 aaPredicted RBP23.16■■□□□ 1.3
CCDC88C-205ENST00000553403 SRP9P49458 86 aaKnown RBP23.16■■□□□ 1.3
CCDC88C-205ENST00000553403 TPTEP56180 551 aa23.16■■□□□ 1.3
CCDC88C-205ENST00000553403 PLA2G7Q13093 441 aa23.16■■□□□ 1.3
CCDC88C-205ENST00000553403 KLF9Q13886 244 aaPredicted RBP23.16■■□□□ 1.3
CCDC88C-205ENST00000553403 SLC10A1Q14973 349 aa23.16■■□□□ 1.3
CCDC88C-205ENST00000553403 RNASE12Q5GAN4 147 aaKnown RBP23.16■■□□□ 1.3
CCDC88C-205ENST00000553403 ZNF766Q5HY98 468 aa23.16■■□□□ 1.3
CCDC88C-205ENST00000553403 GLYATL3Q5SZD4 288 aa23.16■■□□□ 1.3
CCDC88C-205ENST00000553403 ZNF813Q6ZN06 617 aa23.16■■□□□ 1.3
CCDC88C-205ENST00000553403 FAM57BQ71RH2 274 aa23.16■■□□□ 1.3
CCDC88C-205ENST00000553403 FAM109AQ8N4B1 249 aa23.16■■□□□ 1.3
CCDC88C-205ENST00000553403 TMEM178AQ8NBL3 297 aa23.16■■□□□ 1.3
CCDC88C-205ENST00000553403 OR1M1Q8NGA1 313 aa23.16■■□□□ 1.3
CCDC88C-205ENST00000553403 FCAMRQ8WWV6 532 aa23.16■■□□□ 1.3
CCDC88C-205ENST00000553403 FBXO17Q96EF6 278 aa23.16■■□□□ 1.3
CCDC88C-205ENST00000553403 DIABLOQ9NR28 239 aa23.16■■□□□ 1.3
CCDC88C-205ENST00000553403 SLC5A6Q9Y289 635 aa23.16■■□□□ 1.3
CCDC88C-205ENST00000553403 MED13Q9UHV7 2174 aa23.15■■□□□ 1.3
CCDC88C-205ENST00000553403 TMEM272A0A1B0GTI8 110 aa23.15■■□□□ 1.3
CCDC88C-205ENST00000553403 SLC2A1P11166 492 aa23.15■■□□□ 1.3
CCDC88C-205ENST00000553403 ZNF20P17024 532 aa23.15■■□□□ 1.3
CCDC88C-205ENST00000553403 GNALP38405 381 aa23.15■■□□□ 1.3
CCDC88C-205ENST00000553403 GDNFP39905 211 aa23.15■■□□□ 1.3
CCDC88C-205ENST00000553403 GALK2Q01415 458 aa23.15■■□□□ 1.3
CCDC88C-205ENST00000553403 SRYQ05066 204 aa23.15■■□□□ 1.3
CCDC88C-205ENST00000553403 ABHD12BQ7Z5M8 362 aaPredicted RBP23.15■■□□□ 1.3
CCDC88C-205ENST00000553403 CREB3L1Q96BA8 519 aa23.15■■□□□ 1.3
CCDC88C-205ENST00000553403 PGAM5Q96HS1 289 aa23.15■■□□□ 1.3
CCDC88C-205ENST00000553403 SORCS2Q96PQ0 1159 aa23.15■■□□□ 1.3
CCDC88C-205ENST00000553403 AUNIPQ9H7T9 357 aa23.15■■□□□ 1.3
CCDC88C-205ENST00000553403 RNF122Q9H9V4 155 aa23.15■■□□□ 1.3
CCDC88C-205ENST00000553403 TMEM138Q9NPI0 162 aa23.15■■□□□ 1.3
CCDC88C-205ENST00000553403 GPR84Q9NQS5 396 aa23.15■■□□□ 1.3
CCDC88C-205ENST00000553403 EMC3Q9P0I2 261 aa23.15■■□□□ 1.3
CCDC88C-205ENST00000553403 ZNF319Q9P2F9 582 aa23.15■■□□□ 1.3
CCDC88C-205ENST00000553403 CGGBP1Q9UFW8 167 aaPredicted RBP23.15■■□□□ 1.3
CCDC88C-205ENST00000553403 MCTS1Q9ULC4 181 aaKnown RBP23.15■■□□□ 1.3
CCDC88C-205ENST00000553403 RBMX2Q9Y388 322 aaKnown RBP23.15■■□□□ 1.3
CCDC88C-205ENST00000553403 ACOT7O00154 380 aa23.14■■□□□ 1.29
CCDC88C-205ENST00000553403 ORC5O43913 435 aa23.14■■□□□ 1.29
CCDC88C-205ENST00000553403 CTAG2O75638 210 aa23.14■■□□□ 1.29
CCDC88C-205ENST00000553403 ECDO95905 644 aaPredicted RBP23.14■■□□□ 1.29
CCDC88C-205ENST00000553403 IGLV3-1P01715 115 aa23.14■■□□□ 1.29
CCDC88C-205ENST00000553403 BTCP35070 178 aa23.14■■□□□ 1.29
CCDC88C-205ENST00000553403 DNM1P46Q6ZS02 220 aa23.14■■□□□ 1.29
CCDC88C-205ENST00000553403 PNPLA5Q7Z6Z6 429 aaPredicted RBP23.14■■□□□ 1.29
CCDC88C-205ENST00000553403 GLCCI1Q86VQ1 547 aa23.14■■□□□ 1.29
CCDC88C-205ENST00000553403 JAGN1Q8N5M9 183 aa23.14■■□□□ 1.29
CCDC88C-205ENST00000553403 OR52I2Q8NH67 350 aa23.14■■□□□ 1.29
CCDC88C-205ENST00000553403 LINC00470Q9BZP3 86 aa23.14■■□□□ 1.29
CCDC88C-205ENST00000553403 GPR35Q9HC97 309 aa23.14■■□□□ 1.29
CCDC88C-205ENST00000553403 NOSIPQ9Y314 301 aaKnown RBP23.14■■□□□ 1.29
CCDC88C-205ENST00000553403 RHBDD3Q9Y3P4 386 aa23.14■■□□□ 1.29
CCDC88C-205ENST00000553403 HMX3A6NHT5 357 aa23.13■■□□□ 1.29
CCDC88C-205ENST00000553403 ERCC1P07992 297 aaPredicted RBP23.13■■□□□ 1.29
CCDC88C-205ENST00000553403 TMIGD3P0DMS9 266 aaPredicted RBP23.13■■□□□ 1.29
CCDC88C-205ENST00000553403 RAB3AP20336 220 aa23.13■■□□□ 1.29
CCDC88C-205ENST00000553403 EFNB2P52799 333 aa23.13■■□□□ 1.29
CCDC88C-205ENST00000553403 BTG1P62324 171 aa23.13■■□□□ 1.29
CCDC88C-205ENST00000553403 RAB35Q15286 201 aa23.13■■□□□ 1.29
CCDC88C-205ENST00000553403 STK11Q15831 433 aa23.13■■□□□ 1.29
CCDC88C-205ENST00000553403 SPTSSAQ969W0 71 aa23.13■■□□□ 1.29
CCDC88C-205ENST00000553403 UPRTQ96BW1 309 aa23.13■■□□□ 1.29
CCDC88C-205ENST00000553403 FOXB1Q99853 325 aa23.13■■□□□ 1.29
CCDC88C-205ENST00000553403 DPAGT1Q9H3H5 408 aa23.13■■□□□ 1.29
CCDC88C-205ENST00000553403 PARPBPQ9NWS1 579 aa23.13■■□□□ 1.29
CCDC88C-205ENST00000553403 PLEK2Q9NYT0 353 aa23.13■■□□□ 1.29
CCDC88C-205ENST00000553403 N6AMT1Q9Y5N5 214 aa23.13■■□□□ 1.29
CCDC88C-205ENST00000553403 PTPRBP23467 1997 aa23.13■■□□□ 1.29
CCDC88C-205ENST00000553403 A0A0U1RQV5 110 aa23.13■■□□□ 1.29
CCDC88C-205ENST00000553403 LDLRAD4O15165 306 aa23.13■■□□□ 1.29
CCDC88C-205ENST00000553403 ARSBP15848 533 aa23.13■■□□□ 1.29
CCDC88C-205ENST00000553403 HLA-DMAP28067 261 aa23.13■■□□□ 1.29
CCDC88C-205ENST00000553403 AP3S2P59780 193 aa23.13■■□□□ 1.29
CCDC88C-205ENST00000553403 SCRN3Q0VDG4 424 aa23.13■■□□□ 1.29
CCDC88C-205ENST00000553403 ECH1Q13011 328 aa23.13■■□□□ 1.29
CCDC88C-205ENST00000553403 PGAP1Q75T13 922 aa23.13■■□□□ 1.29
CCDC88C-205ENST00000553403 COMMD2Q86X83 199 aa23.13■■□□□ 1.29
CCDC88C-205ENST00000553403 CCDC54Q8NEL0 328 aa23.13■■□□□ 1.29
CCDC88C-205ENST00000553403 PTX4Q96A99 478 aa23.13■■□□□ 1.29
CCDC88C-205ENST00000553403 ALKBH3Q96Q83 286 aaPredicted RBP23.13■■□□□ 1.29
CCDC88C-205ENST00000553403 UQCC2Q9BRT2 126 aa23.13■■□□□ 1.29
CCDC88C-205ENST00000553403 GGT3PA6NGU5 568 aa23.12■■□□□ 1.29
CCDC88C-205ENST00000553403 GSTT2BP0CG30 244 aa23.12■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms