RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 TWIST2Q8WVJ9 160 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 RAB1CQ92928 201 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 SLC41A3Q96GZ6 507 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 RSRC1Q96IZ7 334 aaKnown RBP2.95□□□□□ -1.94
LIMA1-206ENST00000550611 SLC35G5Q96KT7 338 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 NR1H4Q96RI1 486 aaPredicted RBP2.95□□□□□ -1.94
LIMA1-206ENST00000550611 SH3GL3Q99963 347 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 RBM4BQ9BQ04 359 aaKnown RBP2.95□□□□□ -1.94
LIMA1-206ENST00000550611 TAPBPLQ9BX59 468 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 TXLNGYQ9BZA5 131 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 TCF7L2Q9NQB0 619 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 PAPOLBQ9NRJ5 636 aaKnown RBP2.95□□□□□ -1.94
LIMA1-206ENST00000550611 ADPRHL2Q9NX46 363 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 SLCO1C1Q9NYB5 712 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 C1RLQ9NZP8 487 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 MSRB1Q9NZV6 116 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 TAAR3PQ9P1P4 343 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 SLC7A8Q9UHI5 535 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 PURGQ9UJV8 347 aaKnown RBP2.95□□□□□ -1.94
LIMA1-206ENST00000550611 TMCC3Q9ULS5 477 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 AUP1Q9Y679 476 aa2.95□□□□□ -1.94
LIMA1-206ENST00000550611 HEATR1Q9H583 2144 aaKnown RBP2.95□□□□□ -1.94
LIMA1-206ENST00000550611 IGKV1D-42A0A075B6H8 117 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 A0A096LPI6 279 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 A0A1B0GVY2 172 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 A0A1W2PPW3 197 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 CLPSL1A2RUU4 121 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 CLDN25C9JDP6 229 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 F5H0A9 414 aaPredicted RBP2.94□□□□□ -1.94
LIMA1-206ENST00000550611 M0QZ24 198 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 M0R3G1 203 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 TIMM23O14925 209 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 CFLARO15519 480 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 RIPK2O43353 540 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 OR2T1O43869 369 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 DOK2O60496 412 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 ERLIN1O75477 346 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 SEC14L2O76054 403 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 UBL3O95164 117 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 PPP1R3DO95685 299 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 SNAP29O95721 258 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 HPRP00739 348 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 IGHV1-46P01743 117 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 IGHV2-70P01814 119 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 IGHMP01871 453 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 LCKP06239 509 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 DBIP07108 87 aaKnown RBP2.94□□□□□ -1.94
LIMA1-206ENST00000550611 CD55P08174 381 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 PATE4P0C8F1 98 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 GKN3PP0CG01 181 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 IGHV4-38-2P0DP08 117 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 CD79AP11912 226 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 PRG2P13727 222 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 HLA-DOBP13765 273 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 IL7RP16871 459 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 ALDH3A1P30838 453 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 CD80P33681 288 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 SOAT1P35610 550 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 RPS5P46782 204 aaKnown RBP2.94□□□□□ -1.94
LIMA1-206ENST00000550611 UCP2P55851 309 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 KLF3P57682 345 aaPredicted RBP2.94□□□□□ -1.94
LIMA1-206ENST00000550611 ERVS71-1P61550 626 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 PCLAFQ15004 111 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 CHI3L2Q15782 390 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 MOGQ16653 247 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 HFEQ30201 348 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 ALKBH6Q3KRA9 238 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 GPAT3Q53EU6 434 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 SPRNQ5BIV9 151 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 C6orf10Q5SRN2 563 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 GKAP1Q5VSY0 366 aaPredicted RBP2.94□□□□□ -1.94
LIMA1-206ENST00000550611 FAM205BPQ63HN1 556 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 WBP2NLQ6ICG8 309 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 TMEM154Q6P9G4 183 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 C6orf89Q6UWU4 347 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 CCDC80Q76M96 950 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 TRMT10CQ7L0Y3 403 aaKnown RBP2.94□□□□□ -1.94
LIMA1-206ENST00000550611 PIWIL3Q7Z3Z3 882 aaKnown RBP2.94□□□□□ -1.94
LIMA1-206ENST00000550611 NET1Q7Z628 596 aaPredicted RBP2.94□□□□□ -1.94
LIMA1-206ENST00000550611 LRRC28Q86X40 367 aaPredicted RBP2.94□□□□□ -1.94
LIMA1-206ENST00000550611 VRK2Q86Y07 508 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 SKA3Q8IX90 412 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 FAM185AQ8N0U4 392 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 GPR137CQ8N3F9 429 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 FNDC5Q8NAU1 212 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 OR4A15Q8NGL6 344 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 OR4F5Q8NH21 305 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 OR6S1Q8NH40 331 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 OR52P1PQ8NH57 321 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 SYNPRQ8TBG9 265 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 PNPT1Q8TCS8 783 aaKnown RBP2.94□□□□□ -1.94
LIMA1-206ENST00000550611 IFT81Q8WYA0 676 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 C11orf40Q8WZ69 217 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 GTF3AQ92664 365 aaKnown RBP2.94□□□□□ -1.94
LIMA1-206ENST00000550611 TMEM54Q969K7 222 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 TAAR8Q969N4 342 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 SLC35B4Q969S0 331 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 TESCQ96BS2 214 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 UPRTQ96BW1 309 aa2.94□□□□□ -1.94
LIMA1-206ENST00000550611 SLC25A36Q96CQ1 311 aa2.94□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms