RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 HIST2H3PS2Q5TEC6 136 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 CORO6Q6QEF8 472 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 SHISA2Q6UWI4 295 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 FBXW12Q6X9E4 464 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 RBMS3Q6XE24 437 aaKnown RBP7.09□□□□□ -1.27
USP28-215ENST00000545608 DPY19L2P2Q6ZN68 376 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 HIST2H3AQ71DI3 136 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 CYP4Z1Q86W10 505 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 OR8G5Q8NG78 346 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 OR10AD1Q8NGE0 317 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 TAF15Q92804 592 aaKnown RBP eCLIP7.09□□□□□ -1.27
USP28-215ENST00000545608 MEGF10Q96KG7 1140 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 C7orf34Q96L11 122 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 COG8Q96MW5 612 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 KCTD14Q9BQ13 255 aaPredicted RBP7.09□□□□□ -1.27
USP28-215ENST00000545608 MRI1Q9BV20 369 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 ZNF747Q9BV97 191 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 NDEL1Q9GZM8 345 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 WDR76Q9H967 626 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 EFCAB1Q9HAE3 211 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 LHFPL6Q9Y693 200 aa7.09□□□□□ -1.27
USP28-215ENST00000545608 TRBV23-1A0A0A0MS06 115 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 IGLV1-36A0A0B4J1U3 117 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 DNAJC9-AS1A6NH13 148 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 UNC119BA6NIH7 251 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 IQCF6A8MYZ5 107 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 F5H5P2 479 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 MLNRO43193 412 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 ALX3O95076 343 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 PPP1R3DO95685 299 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 IGHV4-38-2P0DP08 117 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 SELEP16581 610 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 RHCEP18577 417 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 RGS6P49758 472 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 RPS6KA3P51812 740 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 PSME3P61289 254 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 FOXL1Q12952 345 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 BAMBIQ13145 260 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 GLYATQ6IB77 296 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 SLC27A4Q6P1M0 643 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 HACD2Q6Y1H2 254 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 ADCK1Q86TW2 530 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 NAA40Q86UY6 237 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 KLBQ86Z14 1044 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 OR6V1Q8N148 313 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 MUC20Q8N307 709 aaPredicted RBP7.08□□□□□ -1.28
USP28-215ENST00000545608 FAM86B1Q8N7N1 296 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 BVESQ8NE79 360 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 GJC3Q8NFK1 279 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 OR5L1Q8NGL2 311 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 OR13G1Q8NGZ3 307 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 OR52J3Q8NH60 311 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 APOBEC3DQ96AK3 386 aaPredicted RBP7.08□□□□□ -1.28
USP28-215ENST00000545608 DACT3Q96B18 629 aaPredicted RBP7.08□□□□□ -1.28
USP28-215ENST00000545608 ZNF582Q96NG8 517 aaPredicted RBP7.08□□□□□ -1.28
USP28-215ENST00000545608 ERMAPQ96PL5 475 aaPredicted RBP7.08□□□□□ -1.28
USP28-215ENST00000545608 RAB3IPQ96QF0 476 aaPredicted RBP7.08□□□□□ -1.28
USP28-215ENST00000545608 COQ7Q99807 217 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 SLC30A2Q9BRI3 323 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 TMEM246Q9BRR3 403 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 FUZQ9BT04 418 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 SSBP3Q9BWW4 388 aaPredicted RBP7.08□□□□□ -1.28
USP28-215ENST00000545608 CCDC134Q9H6E4 229 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 ABCD2Q9UBJ2 740 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 OR5V1Q9UGF6 321 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 ATPIF1Q9UII2 106 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 RPS6KA6Q9UK32 745 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 B9D1Q9UPM9 204 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 AURKCQ9UQB9 309 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 POLR1DQ9Y2S0 133 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 FAM32AQ9Y421 112 aaKnown RBP7.08□□□□□ -1.28
USP28-215ENST00000545608 TANC2Q9HCD6 1990 aa7.08□□□□□ -1.28
USP28-215ENST00000545608 TENM1Q9UKZ4 2725 aa7.07□□□□□ -1.28
USP28-215ENST00000545608 IFNL4K9M1U5 179 aa7.07□□□□□ -1.28
USP28-215ENST00000545608 KCNAB3O43448 404 aa7.07□□□□□ -1.28
USP28-215ENST00000545608 CCDC22O60826 627 aa7.07□□□□□ -1.28
USP28-215ENST00000545608 ATP5HO75947 161 aa7.07□□□□□ -1.28
USP28-215ENST00000545608 HLA-DPB1P04440 258 aa7.07□□□□□ -1.28
USP28-215ENST00000545608 RPS2P15880 293 aaKnown RBP7.07□□□□□ -1.28
USP28-215ENST00000545608 CRABP1P29762 137 aa7.07□□□□□ -1.28
USP28-215ENST00000545608 SRP9P49458 86 aaKnown RBP7.07□□□□□ -1.28
USP28-215ENST00000545608 NUDT2P50583 147 aa7.07□□□□□ -1.28
USP28-215ENST00000545608 ELF3P78545 371 aaPredicted RBP7.07□□□□□ -1.28
USP28-215ENST00000545608 COX10Q12887 443 aa7.07□□□□□ -1.28
USP28-215ENST00000545608 MAB21L1Q13394 359 aa7.07□□□□□ -1.28
USP28-215ENST00000545608 SLC9A3R2Q15599 337 aa7.07□□□□□ -1.28
USP28-215ENST00000545608 C21orf62-AS1Q17RA5 79 aa7.07□□□□□ -1.28
USP28-215ENST00000545608 ZNF181Q2M3W8 571 aa7.07□□□□□ -1.28
USP28-215ENST00000545608 RFX4Q33E94 735 aa7.07□□□□□ -1.28
USP28-215ENST00000545608 KRTAP27-1Q3LI81 207 aa7.07□□□□□ -1.28
USP28-215ENST00000545608 LCE2CQ5TA81 110 aa7.07□□□□□ -1.28
USP28-215ENST00000545608 CDPF1Q6NVV7 123 aa7.07□□□□□ -1.28
USP28-215ENST00000545608 LEG1Q6P5S2 330 aa7.07□□□□□ -1.28
USP28-215ENST00000545608 SMARCD3Q6STE5 483 aa7.07□□□□□ -1.28
USP28-215ENST00000545608 LYPD2Q6UXB3 125 aa7.07□□□□□ -1.28
USP28-215ENST00000545608 LRRN1Q6UXK5 716 aa7.07□□□□□ -1.28
USP28-215ENST00000545608 COLCA1Q6ZS62 124 aa7.07□□□□□ -1.28
USP28-215ENST00000545608 MOGAT3Q86VF5 341 aa7.07□□□□□ -1.28
USP28-215ENST00000545608 LINC00346Q8IVM7 164 aa7.07□□□□□ -1.28
USP28-215ENST00000545608 PARP8Q8N3A8 854 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms